Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018463

Physical Location & Seq

Genomic Coordinates Forward (+)

5787045 .. 5787916

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAAGCATTATATATTGAACAAGGATGGTACTGTCGCACCTAGGAAACTTGTCGCCCCTATGTGCGTTAAAGAAGAGGATAATCGATTTCATTACCACCTTGTGGGTTCCTGCAATGGCTTGATATGTCTATATTGTGATGATACTCACGAAGAGACCACCGAGGAAGAAGATATACCACCGACGAAGTTGTACAACTTCACCTGTGCTCCGTCGACTTGGTCGTATGGAACCCTTGCAATACAGATGCATGGAGCCAAAGAGACATTTCAGGAGGTCGCTACATTAACCAATCTTTTCGACAAAGAATGTGATCATGAGCTCTCAGTGGGAATTGGAACGACAATGGGAAATTGTCTCTTTGTGTATGTTCACGATCGGCACAATCATAATTACGATGTGGGTTTTGCCTATACAATATGGGTGATAAAGGAGTACGGGATCGAGAAATCTTGGACTAAACTTGTACAGATTCCTTCACATATGTTTCGTGGGGGTTTTACATGTTATCGAAAGCCTAAATGGATGTTAAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

179

Amino Acids

20.75

Weight (kDa)

6.05

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38601 FvH4_7g02841
rosa_chinensis	RchiOBHm_Chr4g0391071
rosa_roxburghii	Rroxscaffold_2G00095950 Rroxscaffold_2G00096000 Rroxscaffold_5G00337600 Rroxscaffold_5G00337640
rosa_rugosa	Rorug02G0430800 Rorug03G0338800
rosa_samantha	Rh4BG037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	449
AdeI	CACNNNGTG	1 cut(s)	103
AfaI	GTAC	4 cut(s)	31, 194, 437, 468
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflIII	ACRYGT	1 cut(s)	503
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
Alw21I	GWGCWC	2 cut(s)	211, 324
Alw26I	GTCTC	3 cut(s)	149, 257, 362
AlwI	GGATC	1 cut(s)	449
AspA2I	CCTAGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	193, 436
AvrII	CCTAGG	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	324
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
Bbv12I	GWGCWC	2 cut(s)	211, 324
BccI	CCATC	1 cut(s)	20
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	3 cut(s)	149, 257, 362
BfaI	CTAG	1 cut(s)	42
BlnI	CCTAGG	1 cut(s)	41
BmiI	GGNNCC	3 cut(s)	109, 232, 256
BmsI	GCATC	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	85
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	41, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	41, 162
BseGI	GGATG	2 cut(s)	31, 531
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	85
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	2 cut(s)	211, 324
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	3 cut(s)	149, 257, 362
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	211, 324
Bsp1407I	TGTACA	2 cut(s)	192, 466
Bsp143I	GATC	3 cut(s)	313, 376, 441
BspCNI	CTCAG	1 cut(s)	338
BspDI	ATCGAT	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	109, 232, 256
BspPI	GGATC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	121
BsrGI	TGTACA	2 cut(s)	192, 466
BssECI	CCNNGG	2 cut(s)	41, 162
BssMI	GATC	3 cut(s)	313, 376, 441
BssT1I	CCWWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	2 cut(s)	69, 147
BstAUI	TGTACA	2 cut(s)	192, 466
BstDEI	CTNAG	1 cut(s)	325
BstF5I	GGATG	2 cut(s)	31, 531
BstKTI	GATC	3 cut(s)	316, 379, 444
BstMAI	GTCTC	3 cut(s)	149, 257, 362
BstMBI	GATC	3 cut(s)	313, 376, 441
BstMCI	CGRYCG	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	507
Bsu15I	ATCGAT	1 cut(s)	85
BsuTUI	ATCGAT	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	31, 531
BtsIMutI	CAGTG	1 cut(s)	333
CciI	TCATGA	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	85
Csp6I	GTAC	4 cut(s)	30, 193, 436, 467
CviAII	CATG	3 cut(s)	251, 317, 504
CviJI	RGCY	4 cut(s)	120, 257, 322, 517
CviKI_1	RGCY	4 cut(s)	120, 257, 322, 517
CviQI	GTAC	4 cut(s)	30, 193, 436, 467
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	3 cut(s)	315, 378, 443
DpnII	GATC	3 cut(s)	313, 376, 441
DraIII	CACNNNGTG	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	69, 147
EarI	CTCTTC	2 cut(s)	69, 147
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	3 cut(s)	254, 320, 507
FatI	CATG	3 cut(s)	250, 316, 503
FauNDI	CATATG	1 cut(s)	483
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	215
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	42
Hin1II	CATG	3 cut(s)	254, 320, 507
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	472
HphI	GGTGA	2 cut(s)	193, 436
Hpy166II	GTNNAC	2 cut(s)	216, 373
Hpy188III	TCNNGA	5 cut(s)	149, 272, 317, 374, 445
Hpy8I	GTNNAC	2 cut(s)	216, 373
Hpy99I	CGWCG	2 cut(s)	187, 217
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	114, 239, 250
HpyF3I	CTNAG	1 cut(s)	325
Hsp92II	CATG	3 cut(s)	254, 320, 507
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	313, 376, 441
LmnI	GCTCC	2 cut(s)	214, 254
LpnPI	CCDG	3 cut(s)	124, 217, 257
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	42
MalI	GATC	3 cut(s)	315, 378, 443
MboI	GATC	3 cut(s)	313, 376, 441
MboII	GAAGA	4 cut(s)	86, 164, 179, 182
MhlI	GDGCHC	2 cut(s)	211, 324
MluCI	AATT	3 cut(s)	333, 352, 391
MnlI	CCTC	3 cut(s)	70, 157, 268
Mph1103I	ATGCAT	1 cut(s)	252
MseI	TTAA	3 cut(s)	69, 287, 530
NdeI	CATATG	1 cut(s)	483
NdeII	GATC	3 cut(s)	313, 376, 441
NlaIII	CATG	3 cut(s)	254, 320, 507
NlaIV	GGNNCC	3 cut(s)	109, 232, 256
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	1 cut(s)	507
PagI	TCATGA	1 cut(s)	316
PciI	ACATGT	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	472
PflFI	GACNNNGTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	103
Ple19I	CGATCG	1 cut(s)	379
PscI	ACATGT	1 cut(s)	503
Psp124BI	GAGCTC	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	109, 232, 256
PsyI	GACNNNGTC	1 cut(s)	220
PvuI	CGATCG	1 cut(s)	379
RsaI	GTAC	4 cut(s)	31, 194, 437, 468
RsaNI	GTAC	4 cut(s)	30, 193, 436, 467
SacI	GAGCTC	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	69, 287, 530
Sau3AI	GATC	3 cut(s)	313, 376, 441
SduI	GDGCHC	2 cut(s)	211, 324
SetI	ASST	5 cut(s)	43, 102, 206, 279, 324
SfaNI	GCATC	1 cut(s)	237
Sse9I	AATT	3 cut(s)	333, 352, 391
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	5 cut(s)	85, 215, 300, 444, 511
TasI	AATT	3 cut(s)	333, 352, 391
TatI	WGTACW	2 cut(s)	192, 466
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	3 cut(s)	69, 287, 530
Tru9I	TTAA	3 cut(s)	69, 287, 530
TscAI	CASTG	1 cut(s)	333
TspDTI	ATGAA	2 cut(s)	17, 80
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	333
Tth111I	GACNNNGTC	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	103
XceI	RCATGY	1 cut(s)	507
XmaJI	CCTAGG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.