Rroxscaffold_2G00096000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018463
Physical Location & Seq
Forward (+)
17270515 .. 17271138
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096000.1

Sequence Viewer

Length: 438 bp
ATGGAGCACGCCAGTCTTGCCAAGAAAGGCACCAACCGCTTGAAGGTTCTTGTTTCAATCGAGCCTCCCCAATCCATAGATTACAAAGCTTTACTGAAGCATGAAGATGATGGACATGTTGCAAGCAGACAACTTAAGCTTGATTTATCAAAGTGCTGCCCAGACATGTTGACGTCTCGTCAACTGAACATTGTGGGATCGTGTAATGGGTTGCTACGGGACAGCTATGTACGGGAGTATGATGATGGTGATTCTAAGTGTCTCAACAAAGTTGCTGTCTTTACACTTAAAACAGGTTCATGGAGGAACCATTATGAAGAAAGGAGGGTGAATCGTATCAATGAAAGAGAGAGAGCATTAAATCGGCTAGACAAGGGTGCTTATCAAACGGAGCTCTACATTGGATGGAACTCGTGTTCGACTATAGACACTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.56

Weight (kDa)

8.59

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 29
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 43
AflII CTTAAG 1 cut(s) 134
AflIII ACRYGT 2 cut(s) 115, 165
AgsI TTSAA 2 cut(s) 43, 57
AhdI GACNNNNNGTC 1 cut(s) 177
AloI GAACNNNNNNTCC 2 cut(s) 400, 432
AluBI AGCT 4 cut(s) 89, 139, 225, 394
AluI AGCT 4 cut(s) 89, 139, 225, 394
Alw21I GWGCWC 2 cut(s) 9, 396
Alw26I GTCTC 2 cut(s) 180, 266
AlwI GGATC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 156
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AsuHPI GGTGA 2 cut(s) 260, 340
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 396
BauI CACGAG 1 cut(s) 412
Bbv12I GWGCWC 2 cut(s) 9, 396
BbvI GCAGC 1 cut(s) 143
BccI CCATC 3 cut(s) 104, 239, 399
BcoDI GTCTC 2 cut(s) 180, 266
BfaI CTAG 2 cut(s) 368, 436
BfmI CTRYAG 1 cut(s) 423
BfrI CTTAAG 1 cut(s) 134
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
BmeRI GACNNNNNGTC 1 cut(s) 177
BmiI GGNNCC 2 cut(s) 31, 308
BsaHI GRCGYC 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 9, 396
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 180, 266
BsmBI CGTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 233
Bsp1286I GDGCHC 2 cut(s) 9, 396
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 31, 308
BspPI GGATC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 29
BspTI CTTAAG 1 cut(s) 134
BsrI ACTGG 1 cut(s) 12
BssMI GATC 1 cut(s) 197
BssNI GRCGYC 1 cut(s) 173
BssSI CACGAG 1 cut(s) 412
Bst2BI CACGAG 1 cut(s) 412
BstACI GRCGYC 1 cut(s) 173
BstAFI CTTAAG 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 9, 124
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 410
BstKTI GATC 1 cut(s) 200
BstMAI GTCTC 2 cut(s) 180, 266
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 2 cut(s) 17, 36
BstNSI RCATGY 2 cut(s) 119, 169
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 410
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 2 cut(s) 9, 124
Csp6I GTAC 1 cut(s) 230
CviAII CATG 4 cut(s) 101, 116, 166, 300
CviJI RGCY 6 cut(s) 64, 89, 139, 225, 367, 394
CviKI_1 RGCY 6 cut(s) 64, 89, 139, 225, 367, 394
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
DriI GACNNNNNGTC 1 cut(s) 177
Eam1105I GACNNNNNGTC 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 396
Eco53kI GAGCTC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 4 cut(s) 104, 119, 169, 303
FaiI YATR 9 cut(s) 77, 102, 117, 167, 228, 240, 301, 315, 425
FaqI GGGAC 1 cut(s) 233
FatI CATG 4 cut(s) 100, 115, 165, 299
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 1 cut(s) 417
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 2 cut(s) 368, 436
GluI GCNGC 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 4 cut(s) 104, 119, 169, 303
HincII GTYRAC 2 cut(s) 171, 182
HindII GTYRAC 2 cut(s) 171, 182
HindIII AAGCTT 2 cut(s) 87, 137
HinfI GANTC 2 cut(s) 251, 331
HphI GGTGA 2 cut(s) 260, 340
Hpy166II GTNNAC 2 cut(s) 171, 182
Hpy8I GTNNAC 2 cut(s) 171, 182
HpyAV CCTTC 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 36
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 4 cut(s) 104, 119, 169, 303
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 4, 391
LpnPI CCDG 3 cut(s) 25, 174, 279
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 2 cut(s) 368, 436
MaeII ACGT 1 cut(s) 173
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 2 cut(s) 116, 329
MhlI GDGCHC 2 cut(s) 9, 396
MnlI CCTC 3 cut(s) 75, 297, 318
MseI TTAA 3 cut(s) 135, 288, 359
MslI CAYNNNNRTG 1 cut(s) 105
MspCI CTTAAG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 17, 36
NdeII GATC 1 cut(s) 197
NlaIII CATG 4 cut(s) 104, 119, 169, 303
NlaIV GGNNCC 2 cut(s) 31, 308
NspI RCATGY 2 cut(s) 119, 169
PciI ACATGT 2 cut(s) 115, 165
PfeI GAWTC 2 cut(s) 251, 331
PkrI GCNGC 1 cut(s) 158
PscI ACATGT 2 cut(s) 115, 165
Psp124BI GAGCTC 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 31, 308
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 105
SacI GAGCTC 1 cut(s) 396
SaqAI TTAA 3 cut(s) 135, 288, 359
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 1 cut(s) 197
SduI GDGCHC 2 cut(s) 9, 396
SetI ASST 7 cut(s) 48, 91, 141, 176, 227, 298, 396
SfcI CTRYAG 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SsiI CCGC 1 cut(s) 37
SspMI CTAG 2 cut(s) 368, 436
SstI GAGCTC 1 cut(s) 396
TaiI ACGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 60, 419
TfiI GAWTC 2 cut(s) 251, 331
Tru1I TTAA 3 cut(s) 135, 288, 359
Tru9I TTAA 3 cut(s) 135, 288, 359
TscAI CASTG 1 cut(s) 436
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 4 cut(s) 117, 288, 330, 357
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 436
Vha464I CTTAAG 1 cut(s) 134
XceI RCATGY 2 cut(s) 119, 169
XspI CTAG 2 cut(s) 368, 436
ZraI GACGTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.