Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0018463

Physical Location & Seq

Genomic Coordinates Forward (+)

6700547 .. 6701933

Gene Structure 1387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG037700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAGGTGATCCTCGACGGCAGCCTTCCCTCGGAAATTCTTGTCGAGATACTGTCTGGGCTTCCTTTCCAATCACTACGACAATTTCGTTTTGTATGCAAGTCATGGCGTACTTTAATATCCAGTTCATATTTTCTCATCAAACACACCAGGGTCACTCTTGGAGATAGAAGCAGGTTAAAGTTCCTATATGGATTACATCCACCCCGATTCATACACTATGAAGCATTATTGAACAAGGATGGTCCTGTTGGACCTAGGAAACTTGTTGCCCCTATGTGCGTTAAAGAAGATGATAATCGATTTAGTTACCGCCTTATAGGTTCCTGCAATGGCTTGATATGTCTATATTGTGAAGATACTCACGAAGAGACCACCGAGGAAGAAGATACCACCGACGAAGTTATACAACTTCATCTGTGCTCCGTTGACTTGGTCGTATGGAATCCTTGCACTAGATATGCATGCAGGCTATCAGGACCGAGTCTTTTAGGAGGCGTATTTGTAGGAGTTTTTTTTGGGATTTGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

177

Amino Acids

20.18

Weight (kDa)

5.95

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 47	1.3e-11	F-box domain
F-box-like	PF12937	8 - 43	3.4e-10	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38601 FvH4_7g02841
rosa_chinensis	RchiOBHm_Chr4g0391071
rosa_roxburghii	Rroxscaffold_2G00095950 Rroxscaffold_2G00096000 Rroxscaffold_5G00337600 Rroxscaffold_5G00337640
rosa_rugosa	Rorug02G0430800 Rorug03G0338800
rosa_samantha	Rh4BG037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	165
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	149
Alw21I	GWGCWC	1 cut(s)	425
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	36
AspA2I	CCTAGG	1 cut(s)	257
AspS9I	GGNCC	3 cut(s)	245, 254, 479
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	3 cut(s)	245, 254, 479
AvrII	CCTAGG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	258, 456
BfuAI	ACCTGC	1 cut(s)	165
BisI	GCNGC	1 cut(s)	22
BlnI	CCTAGG	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	3 cut(s)	245, 254, 479
BmgT120I	GGNCC	3 cut(s)	245, 254, 479
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	4 cut(s)	30, 150, 257, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	151
BseCI	ATCGAT	1 cut(s)	301
BseDI	CCNNGG	4 cut(s)	30, 150, 257, 378
BseGI	GGATG	2 cut(s)	199, 247
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	33
BshVI	ATCGAT	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	365
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	30, 150, 257, 378
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	466, 470
BstF5I	GGATG	2 cut(s)	199, 247
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	1 cut(s)	9
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	301
BsuTUI	ATCGAT	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	199, 247
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	466, 470
Cfr13I	GGNCC	3 cut(s)	245, 254, 479
ClaI	ATCGAT	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	2 cut(s)	105, 465
CviJI	RGCY	4 cut(s)	24, 61, 336, 472
CviKI_1	RGCY	4 cut(s)	24, 61, 336, 472
CviQI	GTAC	1 cut(s)	111
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	3 cut(s)	245, 254, 479
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	2 cut(s)	108, 468
FatI	CATG	2 cut(s)	104, 464
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	2 cut(s)	186, 254
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	2 cut(s)	258, 456
GluI	GCNGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	108, 468
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	210, 445, 484
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	46, 365, 477
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	2 cut(s)	20, 401
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	5 cut(s)	99, 330, 453, 464, 468
Hsp92II	CATG	2 cut(s)	108, 468
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	428
LpnPI	CCDG	9 cut(s)	42, 136, 136, 160, 163, 261, 340, 454, 462
Lsp1109I	GCAGC	1 cut(s)	33
MaeI	CTAG	2 cut(s)	258, 456
MaeIII	GTNAC	2 cut(s)	154, 308
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	5 cut(s)	302, 368, 380, 395, 398
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	2 cut(s)	36, 83
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	4 cut(s)	23, 40, 373, 488
Mph1103I	ATGCAT	1 cut(s)	466
MseI	TTAA	3 cut(s)	116, 179, 285
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	108, 468
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	466
NspI	RCATGY	1 cut(s)	468
PaeI	GCATGC	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	210, 445
PflFI	GACNNNGTC	2 cut(s)	434, 483
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	3 cut(s)	245, 254, 479
PsyI	GACNNNGTC	2 cut(s)	434, 483
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	116, 179, 285
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	3 cut(s)	245, 254, 479
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	4 cut(s)	9, 179, 259, 325
SinI	GGWCC	3 cut(s)	245, 254, 479
SphI	GCATGC	1 cut(s)	468
Sse9I	AATT	2 cut(s)	36, 83
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	2 cut(s)	258, 456
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	54
TaqI	TCGA	3 cut(s)	15, 45, 301
TaqII	GACCGA	1 cut(s)	496
TasI	AATT	2 cut(s)	36, 83
TfiI	GAWTC	2 cut(s)	210, 445
Tru1I	TTAA	3 cut(s)	116, 179, 285
Tru9I	TTAA	3 cut(s)	116, 179, 285
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	117, 202, 237, 404
TspGWI	ACGGA	1 cut(s)	415
Tth111I	GACNNNGTC	2 cut(s)	434, 483
VpaK11BI	GGWCC	3 cut(s)	245, 254, 479
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	468
XmaJI	CCTAGG	1 cut(s)	257
XspI	CTAG	2 cut(s)	258, 456
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.