FvH4_7g02841

F-box Kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018463
Physical Location & Seq
Reverse (-)
3172778 .. 3173614
837 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02841.t1

Sequence Viewer

Length: 837 bp
ATGATTCTAGCACGTACTGAAGATTATAAGGTCATGCTTGGGGACATGAGTAGCACTGATACAAAGAGCATCACCCAAATCTATATCTTTGCACTGAAAACTGGTTCATGGAGGTGTTATGAAGAATCTTGGAGAATTGAAAGCAAAGAATTCGGTAAAATGGGCGGACAGGGGTGCTTATCAAATGGTGCACTGCATTGGATTGAACTTGTGTTTGACTCTAGAAGATGCCTAGATGGTTCAAGATCGAGGATTGTAGCTTTTGTTTTAGCTGAGGAGCAATTTCGAGAGATGGCGTCGTTATCATCTTTTATAGACAAAGAGTACTTGGACAAGATTCCTGCAAGCGGTTCATTTCCTTCAAAGTTCTATATTGGAATTGGGATTACTAATGAAAATGGTCTCATTGTATATTCTTACAAGCGCAGGTATCGATACACCGGTTATATTCCCAGGTACGCCAATGATTCTACACTTACAGTATGGGTGATGAAGGAATATGGGATTGAGAAATCTTGGACTAAATTCATACACATTCCTATGAAGTTTTTGGTGCCTCGAGGGTATGATGAATATTTAGTTAGAGAGTATCGCTATACAGAAATTGACATGAGCGATTACCTGTTTCCCGTACATATTTTAGAAGATGGTAAAGTTTTGATGAGTTGTGATGATAAGAAGTTGGTGTTATACAATCCAGAAGAGAAGGCAAAAAGGACTGTTCTTGAGACTAGTCTGTCATCTTATGCAGTCGTCTATGTGGAGACTTTAATTTCACCAAGACCTGGAAGGGGTGCAGACATCTCAAGGAAGGAGAGGAAGAAGGAAGAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

279

Amino Acids

32.32

Weight (kDa)

8.16

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 7 - 258 3.1e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
AasI GACNNNNNNGTC 1 cut(s) 736
AbsI CCTCGAGG 1 cut(s) 558
Acc36I ACCTGC 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 553
AccB7I CCANNNNNTGG 1 cut(s) 785
AciI CCGC 2 cut(s) 165, 348
AcsI RAATTY 2 cut(s) 149, 524
AcuI CTGAAG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 296
AfaI GTAC 4 cut(s) 16, 326, 458, 633
AfiI CCNNNNNNNGG 3 cut(s) 347, 785, 791
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 4 cut(s) 140, 206, 243, 363
AhlI ACTAGT 1 cut(s) 731
AjnI CCWGG 2 cut(s) 452, 784
AluBI AGCT 2 cut(s) 260, 272
AluI AGCT 2 cut(s) 260, 272
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 3 cut(s) 407, 722, 758
Alw44I GTGCAC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 558
ApaLI GTGCAC 1 cut(s) 189
ApoI RAATTY 2 cut(s) 149, 524
AsiGI ACCGGT 1 cut(s) 440
AspLEI GCGC 1 cut(s) 426
AsuHPI GGTGA 3 cut(s) 64, 499, 768
AvaI CYCGRG 1 cut(s) 558
BaeGI GKGCMC 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 427, 460
BanI GGYRCC 1 cut(s) 553
Bbv12I GWGCWC 1 cut(s) 193
BbvCI CCTCAGC 1 cut(s) 273
BccI CCATC 3 cut(s) 230, 286, 641
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciT130I CCWGG 2 cut(s) 454, 786
BcoDI GTCTC 3 cut(s) 407, 722, 758
BcuI ACTAGT 1 cut(s) 731
BfaI CTAG 4 cut(s) 8, 222, 233, 732
BfuAI ACCTGC 1 cut(s) 417
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 2 cut(s) 454, 786
BmeT110I CYCGRG 1 cut(s) 558
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 2 cut(s) 454, 786
BmsI GCATC 2 cut(s) 78, 218
Bpu10I CCTNAGC 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 746, 790
Bsa29I ATCGAT 1 cut(s) 433
BsaAI YACGTR 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 1 cut(s) 452
BsaWI WCCGGW 1 cut(s) 440
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 785, 791
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 2 cut(s) 454, 786
BseCI ATCGAT 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 452
BseLI CCNNNNNNNGG 3 cut(s) 347, 785, 791
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 816
BshNI GGYRCC 1 cut(s) 553
BshTI ACCGGT 1 cut(s) 440
BshVI ATCGAT 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 558
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 347, 785, 791
BsmAI GTCTC 3 cut(s) 407, 722, 758
BsmFI GGGAC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 407
BsoBI CYCGRG 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 1 cut(s) 245
BspACI CCGC 2 cut(s) 165, 348
BspCNI CTCAG 1 cut(s) 265
BspDI ATCGAT 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 555
BspMI ACCTGC 1 cut(s) 417
BspT107I GGYRCC 1 cut(s) 553
BspTNI GGTCTC 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 1 cut(s) 245
BssNI GRCGYC 1 cut(s) 296
Bst2UI CCWGG 2 cut(s) 454, 786
Bst4CI ACNGT 2 cut(s) 481, 721
Bst6I CTCTTC 1 cut(s) 696
BstACI GRCGYC 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 1 cut(s) 248
BstMAI GTCTC 3 cut(s) 407, 722, 758
BstMBI GATC 1 cut(s) 245
BstNI CCWGG 2 cut(s) 454, 786
BstSCI CCNGG 2 cut(s) 452, 784
BstSLI GKGCMC 1 cut(s) 193
Bsu15I ATCGAT 1 cut(s) 433
BsuTUI ATCGAT 1 cut(s) 433
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 3 cut(s) 54, 92, 191
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 346
CfoI GCGC 1 cut(s) 426
Cfr10I RCCGGY 1 cut(s) 440
ClaI ATCGAT 1 cut(s) 433
CseI GACGC 1 cut(s) 285
Csp6I GTAC 4 cut(s) 15, 325, 457, 632
CspAI ACCGGT 1 cut(s) 440
CviAII CATG 4 cut(s) 34, 46, 108, 610
CviJI RGCY 2 cut(s) 260, 272
CviKI_1 RGCY 2 cut(s) 260, 272
CviQI GTAC 4 cut(s) 15, 325, 457, 632
DdeI CTNAG 1 cut(s) 273
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
DrdI GACNNNNNNGTC 1 cut(s) 736
DseDI GACNNNNNNGTC 1 cut(s) 736
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
EciI GGCGGA 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 407
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 558
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 452, 784
FaeI CATG 4 cut(s) 37, 49, 111, 613
FaqI GGGAC 1 cut(s) 56
FatI CATG 4 cut(s) 33, 45, 107, 609
FspBI CTAG 4 cut(s) 8, 222, 233, 732
GlaI GCGC 1 cut(s) 425
HapII CCGG 1 cut(s) 441
HgaI GACGC 1 cut(s) 285
HhaI GCGC 1 cut(s) 426
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 4 cut(s) 37, 49, 111, 613
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 5 cut(s) 4, 125, 218, 337, 467
HpaII CCGG 1 cut(s) 441
HphI GGTGA 3 cut(s) 64, 499, 768
Hpy166II GTNNAC 1 cut(s) 191
Hpy188III TCNNGA 5 cut(s) 222, 243, 287, 698, 725
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 6 cut(s) 369, 487, 700, 783, 805, 817
HpyCH4III ACNGT 2 cut(s) 481, 721
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 6 cut(s) 92, 191, 196, 344, 749, 797
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 13
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 4 cut(s) 37, 49, 111, 613
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 1 cut(s) 245
LmnI GCTCC 1 cut(s) 277
LweI GCATC 2 cut(s) 78, 218
MaeI CTAG 4 cut(s) 8, 222, 233, 732
MaeII ACGT 1 cut(s) 13
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MboII GAAGA 6 cut(s) 32, 134, 237, 656, 713, 832
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 7 cut(s) 135, 149, 281, 378, 524, 603, 771
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 6 cut(s) 105, 243, 268, 554, 567, 810
MseI TTAA 1 cut(s) 770
MslI CAYNNNNRTG 2 cut(s) 112, 539
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 2 cut(s) 454, 786
MvaI CCWGG 2 cut(s) 454, 786
NdeII GATC 1 cut(s) 245
NlaIII CATG 4 cut(s) 37, 49, 111, 613
NlaIV GGNNCC 1 cut(s) 555
PaeR7I CTCGAG 1 cut(s) 558
PfeI GAWTC 4 cut(s) 4, 125, 337, 467
PflMI CCANNNNNTGG 1 cut(s) 785
PinAI ACCGGT 1 cut(s) 440
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Ppu21I YACGTR 1 cut(s) 14
PsiI TTATAA 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 452, 784
PspGI CCWGG 2 cut(s) 452, 784
PspN4I GGNNCC 1 cut(s) 555
PspXI VCTCGAGB 1 cut(s) 558
RsaI GTAC 4 cut(s) 16, 326, 458, 633
RsaNI GTAC 4 cut(s) 15, 325, 457, 632
RseI CAYNNNNRTG 2 cut(s) 112, 539
SaqAI TTAA 1 cut(s) 770
Sau3AI GATC 1 cut(s) 245
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 454, 786
SduI GDGCHC 1 cut(s) 193
SetI ASST 9 cut(s) 16, 33, 116, 262, 274, 431, 458, 624, 787
SfaNI GCATC 2 cut(s) 78, 218
Sfr274I CTCGAG 1 cut(s) 558
SlaI CTCGAG 1 cut(s) 558
SmiMI CAYNNNNRTG 2 cut(s) 112, 539
SmlI CTYRAG 3 cut(s) 558, 725, 805
SmoI CTYRAG 3 cut(s) 558, 725, 805
SpeI ACTAGT 1 cut(s) 731
Sse9I AATT 7 cut(s) 135, 149, 281, 378, 524, 603, 771
SsiI CCGC 2 cut(s) 165, 348
SspI AATATT 1 cut(s) 575
SspMI CTAG 4 cut(s) 8, 222, 233, 732
StyD4I CCNGG 2 cut(s) 452, 784
TaaI ACNGT 2 cut(s) 481, 721
TaiI ACGT 1 cut(s) 16
TaqI TCGA 4 cut(s) 248, 286, 433, 559
TasI AATT 7 cut(s) 135, 149, 281, 378, 524, 603, 771
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 4 cut(s) 4, 125, 337, 467
Tru1I TTAA 1 cut(s) 770
Tru9I TTAA 1 cut(s) 770
TscAI CASTG 3 cut(s) 61, 99, 198
TspDTI ATGAA 8 cut(s) 96, 135, 342, 408, 506, 517, 557, 585
TspRI CASTG 3 cut(s) 61, 99, 198
Van91I CCANNNNNTGG 1 cut(s) 785
VneI GTGCAC 1 cut(s) 189
XapI RAATTY 2 cut(s) 149, 524
XbaI TCTAGA 1 cut(s) 221
XhoI CTCGAG 1 cut(s) 558
XspI CTAG 4 cut(s) 8, 222, 233, 732
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.