Rorug02G0430800

F-box Kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018463
Physical Location & Seq
Reverse (-)
55263306 .. 55263776
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0430800.1

Sequence Viewer

Length: 471 bp
ATGGCCGGAATTGTGGTGGTTTTCGACTTTGATAATACCATCATCGACAGCGACAGCGACAATTTGGTGGTCGACGGGTTGGGTGCCACCGACTTGTTCAATGAACTCCTCCTCACCATGCCATGGAACTCTCTCATGGATAGGATGATGAAGGAGCTTCATTCACAAGGAAAAACTTACGAGGACATTGTGGAGGTGCTCAAAACGACTCCAATTCATCACAGAATTATGGCAGCCATTAAAGCAGCTCATGCTTTAGGATGTGATTTGAGGATAGTGAGTGATGCAAATGTGTTTTTCATTGACAAGATTTTGAAGCATCTTGGTCTGGAGGAATATTTCACAGAAATCAACACTAACCCAGGTTATGTTGATGAAAAAGGAAGGTTAGGATTTCACCTTTTTGTGATTTCACCAGTTCCCCTCATGGGTGTAACCTCTACCCTCCTAACATGTGCAAGAGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

156

Amino Acids

17.42

Weight (kDa)

5.08

Isoelectric Point (pI)

21.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Put_Phosphatase PF06888 4 - 132 2.7e-49 Putative Phosphatase
Hydrolase PF00702 5 - 117 5.1e-06 haloacid dehalogenase-like hydrolase
HAD PF12710 6 - 127 5.3e-08 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 123
AccI GTMKAC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 123, 428
AflIII ACRYGT 1 cut(s) 452
AgsI TTSAA 2 cut(s) 100, 316
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 2 cut(s) 157, 248
AluI AGCT 2 cut(s) 157, 248
Alw21I GWGCWC 1 cut(s) 201
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 233, 245
AsuHPI GGTGA 3 cut(s) 106, 389, 405
BanI GGYRCC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 245, 257
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 363
BisI GCNGC 2 cut(s) 234, 246
BlsI GCNGC 2 cut(s) 235, 247
Bme1390I CCNGG 1 cut(s) 363
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 2 cut(s) 274, 328
BpmI CTGGAG 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 122, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 428
Bse1I ACTGG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 122, 361
BseGI GGATG 2 cut(s) 150, 266
BseLI CCNNNNNNNGG 2 cut(s) 123, 428
BseNI ACTGG 1 cut(s) 416
BseRI GAGGAG 2 cut(s) 98, 101
BseXI GCAGC 2 cut(s) 245, 257
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 123, 428
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 201
Bsp19I CCATGG 1 cut(s) 122
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 416
BssECI CCNNGG 2 cut(s) 122, 361
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 363
BstAPI GCANNNNNTGC 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 2 cut(s) 150, 266
BstMWI GCNNNNNNNGC 2 cut(s) 242, 251
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 361
BstV1I GCAGC 2 cut(s) 245, 257
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 2 cut(s) 150, 266
CviAII CATG 6 cut(s) 118, 123, 136, 251, 427, 453
CviJI RGCY 4 cut(s) 5, 157, 236, 248
CviKI_1 RGCY 4 cut(s) 5, 157, 236, 248
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 6 cut(s) 121, 126, 139, 254, 430, 456
FaiI YATR 8 cut(s) 119, 124, 137, 230, 252, 369, 428, 454
FatI CATG 6 cut(s) 117, 122, 135, 250, 426, 452
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 234, 246
FokI GGATG 2 cut(s) 157, 273
Fsp4HI GCNGC 2 cut(s) 234, 246
GluI GCNGC 2 cut(s) 234, 246
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 6
Hin1II CATG 6 cut(s) 121, 126, 139, 254, 430, 456
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 6
HphI GGTGA 3 cut(s) 106, 389, 405
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 145, 378
HpyCH4V TGCA 2 cut(s) 287, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 251
Hsp92II CATG 6 cut(s) 121, 126, 139, 254, 430, 456
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 5 cut(s) 19, 314, 348, 375, 429
Lsp1109I GCAGC 2 cut(s) 245, 257
LweI GCATC 2 cut(s) 274, 328
MaeIII GTNAC 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 4 cut(s) 9, 61, 213, 225
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 9 cut(s) 119, 122, 175, 187, 264, 325, 434, 448, 455
MseI TTAA 1 cut(s) 240
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 242, 251
NcoI CCATGG 1 cut(s) 122
NlaIII CATG 6 cut(s) 121, 126, 139, 254, 430, 456
NlaIV GGNNCC 1 cut(s) 85
NspI RCATGY 1 cut(s) 456
PciI ACATGT 1 cut(s) 452
PflMI CCANNNNNTGG 1 cut(s) 123
PkrI GCNGC 2 cut(s) 235, 247
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PscI ACATGT 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 1 cut(s) 85
SalI GTCGAC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 234, 246
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 201
SetI ASST 7 cut(s) 159, 198, 250, 367, 389, 402, 440
SfaNI GCATC 2 cut(s) 274, 328
Sse9I AATT 4 cut(s) 9, 61, 213, 225
SspI AATATT 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 122
TaqI TCGA 3 cut(s) 24, 45, 72
TasI AATT 4 cut(s) 9, 61, 213, 225
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 2 cut(s) 233, 245
TspDTI ATGAA 6 cut(s) 117, 149, 164, 206, 289, 390
Van91I CCANNNNNTGG 1 cut(s) 123
XceI RCATGY 1 cut(s) 456
XmiI GTMKAC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.