FvH4_6g38910

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006895
Physical Location & Seq
Forward (+)
30780434 .. 30784536
4103 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38910.t2

Sequence Viewer

Length: 747 bp
ATGCCTGAGAAAATAACTCCTGAGGATCTTTTGAACAACATTGTGGGCTTAGCTGAAAATAGTTCAAAACAGAAATCTGTGCCGTTTTTTGGCGACGACAAATCAGATTCTGTCAGTTCTCAGTTGAATCGGCTATTTGGACGCCAAAAACCTGTCCACCACCTTTTGGGTGGAGGAAAATCTGCTGACGTGTTGTTGTGGAGAAACAAAAAGATATCAGCTAGTGTTTTAACTGGTGCAACTTTTATCTGGGTGCTCTTTGAATGGCTCAATTATCATTTCTTGACTCTTGTGGGTTTTGCTTTGGTTCTTGGTATGCTTGCTCAATTTATCTGGTCAAATTTTTCAGGATTCGTTAACAGTAGGTCCTCTTCTAAAGTACCTCGCCTTGTTCTGCCGGAGGAGTTATTTGTCAACATTGCCATCTCAATTGGTGCTGAAATTAATCGAGGGCTGGAGTTTATTCAGGATGTTGCTTGTGGAGGAAATTTGAAGCAATTTCTTGTGGTTGTAGCAAGCTTGTGGGCTGCTTCAGTTATTGGAAGCTGGTGCAACTTTCTGACAGTTTTGTACATTGGTTTCGTTGCTGCTCATACATTGCCAGTTCTGTATGAGAGATATGGTGATCAGATCGATGACTTTGTGTACTCAGTCTTTGGACAGCTTCAAAATCATTATCGCAAGCTGGATAGTAGTGTCCTCAGCAGGATCCCTAAGGGGAATCTGAAGGCAAAGAAACATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

249

Amino Acids

27.62

Weight (kDa)

9.02

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 62 - 216 1.9e-55 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 166
AclWI GGATC 3 cut(s) 33, 703, 716
AcsI RAATTY 2 cut(s) 340, 487
AcuI CTGAAG 2 cut(s) 516, 746
AcyI GRCGYC 1 cut(s) 142
AfaI GTAC 3 cut(s) 381, 572, 647
AfiI CCNNNNNNNGG 2 cut(s) 89, 166
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 6 cut(s) 34, 66, 127, 263, 493, 668
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 6 cut(s) 53, 221, 519, 546, 664, 685
AluI AGCT 6 cut(s) 53, 221, 519, 546, 664, 685
Alw21I GWGCWC 1 cut(s) 258
AlwI GGATC 3 cut(s) 33, 703, 716
AlwNI CAGNNNCTG 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 527, 587
ApoI RAATTY 2 cut(s) 340, 487
AseI ATTAAT 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 635
AvaII GGWCC 1 cut(s) 366
AxyI CCTNAGG 2 cut(s) 21, 714
BamHI GGATCC 1 cut(s) 708
BarI GAAGNNNNNNTAC 2 cut(s) 355, 387
Bbv12I GWGCWC 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 701
BbvI GCAGC 2 cut(s) 514, 574
BccI CCATC 1 cut(s) 431
BceAI ACGGC 1 cut(s) 67
BclI TGATCA 1 cut(s) 625
BfaI CTAG 1 cut(s) 222
BisI GCNGC 2 cut(s) 528, 588
BlpI GCTNAGC 1 cut(s) 49
BlsI GCNGC 2 cut(s) 529, 589
Bme18I GGWCC 1 cut(s) 366
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 366
BmiI GGNNCC 1 cut(s) 710
BpmI CTGGAG 1 cut(s) 476
Bpu10I CCTNAGC 1 cut(s) 701
Bpu1102I GCTNAGC 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 166
Bse1I ACTGG 2 cut(s) 238, 602
Bse21I CCTNAGG 2 cut(s) 21, 714
Bse3DI GCAATG 2 cut(s) 417, 596
BseCI ATCGAT 1 cut(s) 633
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 2 cut(s) 89, 166
BseMI GCAATG 2 cut(s) 417, 596
BseMII CTCAG 4 cut(s) 12, 134, 663, 715
BseNI ACTGG 2 cut(s) 238, 602
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 514, 574
BshVI ATCGAT 1 cut(s) 633
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 89, 166
Bsp1286I GDGCHC 1 cut(s) 258
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 4 cut(s) 25, 625, 630, 708
Bsp1720I GCTNAGC 1 cut(s) 49
BspCNI CTCAG 4 cut(s) 13, 133, 662, 714
BspDI ATCGAT 1 cut(s) 633
BspLI GGNNCC 1 cut(s) 710
BspPI GGATC 3 cut(s) 33, 703, 716
BsrDI GCAATG 2 cut(s) 417, 596
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 2 cut(s) 238, 602
BssMI GATC 4 cut(s) 25, 625, 630, 708
BssNI GRCGYC 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 362, 565
Bst6I CTCTTC 1 cut(s) 376
BstACI GRCGYC 1 cut(s) 142
BstAUI TGTACA 1 cut(s) 570
BstC8I GCNNGC 3 cut(s) 321, 517, 683
BstDEI CTNAG 7 cut(s) 6, 21, 49, 120, 649, 701, 714
BstF5I GGATG 1 cut(s) 475
BstKTI GATC 4 cut(s) 28, 628, 633, 711
BstMBI GATC 4 cut(s) 25, 625, 630, 708
BstV1I GCAGC 2 cut(s) 514, 574
BstX2I RGATCY 2 cut(s) 25, 708
BstYI RGATCY 2 cut(s) 25, 708
Bsu15I ATCGAT 1 cut(s) 633
Bsu36I CCTNAGG 2 cut(s) 21, 714
BsuTUI ATCGAT 1 cut(s) 633
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 475
Cac8I GCNNGC 3 cut(s) 321, 517, 683
CaiI CAGNNNCTG 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 366
ClaI ATCGAT 1 cut(s) 633
CseI GACGC 1 cut(s) 150
Csp6I GTAC 3 cut(s) 380, 571, 646
CviAII CATG 1 cut(s) 740
CviQI GTAC 3 cut(s) 380, 571, 646
DdeI CTNAG 7 cut(s) 6, 21, 49, 120, 649, 701, 714
DpnI GATC 4 cut(s) 27, 627, 632, 710
DpnII GATC 4 cut(s) 25, 625, 630, 708
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco32I GATATC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 366
Eco57I CTGAAG 2 cut(s) 516, 746
Eco81I CCTNAGG 2 cut(s) 21, 714
EcoO109I RGGNCCY 1 cut(s) 366
EcoRV GATATC 1 cut(s) 216
FaeI CATG 1 cut(s) 743
FaiI YATR 5 cut(s) 317, 594, 612, 621, 741
FatI CATG 1 cut(s) 739
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 2 cut(s) 528, 588
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 2 cut(s) 528, 588
FspBI CTAG 1 cut(s) 222
GluI GCNGC 2 cut(s) 528, 588
GsuI CTGGAG 1 cut(s) 476
HapII CCGG 1 cut(s) 398
HgaI GACGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 142
Hin1II CATG 1 cut(s) 743
HincII GTYRAC 2 cut(s) 358, 415
HindII GTYRAC 2 cut(s) 358, 415
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 5 cut(s) 107, 127, 286, 351, 721
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 1 cut(s) 398
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 4 cut(s) 157, 358, 415, 646
Hpy188I TCNGA 4 cut(s) 106, 561, 630, 726
Hpy188III TCNNGA 4 cut(s) 20, 283, 348, 467
Hpy8I GTNNAC 4 cut(s) 157, 358, 415, 646
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 721
HpyCH4III ACNGT 2 cut(s) 362, 565
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 239, 552
HpyF3I CTNAG 7 cut(s) 6, 21, 49, 120, 649, 701, 714
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 142
Hsp92II CATG 1 cut(s) 743
Ksp22I TGATCA 1 cut(s) 625
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 4 cut(s) 25, 625, 630, 708
Lsp1109I GCAGC 2 cut(s) 514, 574
MaeI CTAG 1 cut(s) 222
MaeII ACGT 1 cut(s) 189
MalI GATC 4 cut(s) 27, 627, 632, 710
MboI GATC 4 cut(s) 25, 625, 630, 708
MboII GAAGA 1 cut(s) 363
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 2 cut(s) 25, 708
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 7 cut(s) 271, 326, 340, 429, 441, 487, 497
MlyI GAGTC 1 cut(s) 280
MnlI CCTC 8 cut(s) 16, 167, 379, 393, 394, 443, 476, 710
MseI TTAA 4 cut(s) 230, 357, 444, 745
MspI CCGG 1 cut(s) 398
MunI CAATTG 1 cut(s) 429
NdeII GATC 4 cut(s) 25, 625, 630, 708
NlaIII CATG 1 cut(s) 743
NlaIV GGNNCC 1 cut(s) 710
PfeI GAWTC 4 cut(s) 107, 127, 351, 721
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 2 cut(s) 529, 589
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PpuMI RGGWCCY 1 cut(s) 366
PshBI ATTAAT 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 710
PspPI GGNCC 1 cut(s) 366
PspPPI RGGWCCY 1 cut(s) 366
PstNI CAGNNNCTG 1 cut(s) 110
PsuI RGATCY 2 cut(s) 25, 708
RsaI GTAC 3 cut(s) 381, 572, 647
RsaNI GTAC 3 cut(s) 380, 571, 646
SaqAI TTAA 4 cut(s) 230, 357, 444, 745
SatI GCNGC 2 cut(s) 528, 588
Sau3AI GATC 4 cut(s) 25, 625, 630, 708
Sau96I GGNCC 1 cut(s) 366
SchI GAGTC 1 cut(s) 280
SduI GDGCHC 1 cut(s) 258
SinI GGWCC 1 cut(s) 366
Sse9I AATT 7 cut(s) 271, 326, 340, 429, 441, 487, 497
SspMI CTAG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 362, 565
TaiI ACGT 1 cut(s) 192
TaqI TCGA 2 cut(s) 448, 633
TasI AATT 7 cut(s) 271, 326, 340, 429, 441, 487, 497
TatI WGTACW 2 cut(s) 570, 645
TfiI GAWTC 4 cut(s) 107, 127, 351, 721
Tru1I TTAA 4 cut(s) 230, 357, 444, 745
Tru9I TTAA 4 cut(s) 230, 357, 444, 745
TseI GCWGC 2 cut(s) 527, 587
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 366
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 2 cut(s) 340, 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.