Prupe.3G179500_v2.0.a1

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0006895
Physical Location & Seq
Forward (+)
19551760 .. 19556292
4533 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G179500.1

Sequence Viewer

Length: 747 bp
ATGCCTGAGAAAATAACTCCTGAGGATCTTTTGAACAACATTGTGGGAACATTTGCTGAAAGTAGTTCAAAACAGAAATCTGTGCCACTTTTTGGGGAAGAGACATCAAACTCAGTCACTTCTAAGTTGAACCGGCTATTTGGACGCCAGAAGCCTGTCCACCACCTTTTGGGTGGAGGCAAATCTGCTGATGTCTTGTTGTGGAGGAACAAAAAGATATCAGCTAGTGTTTTAACTGGTGCAACTGTTACCTGGGTGCTCTTTGAATGGCTCAATTATCATTTCTTGACTCTTGTGGGCTTTGCTTTGGTTCTTCTTATGCTTGCTCAGTTCCTTTGGTCAAATTTTTCCGGCATAATTAGCAGGTCCCCATCTGAAGTACCTCGCCTTGTTGTGCCTGATCAATTATTTGTCAATATTGCCATCTCGATTGGTCATGAAATTAATCGAGCCTTGGAATTTATTCAAGATGTTGCACTTGGAGGAAATTTGAAGCAATTTCTTATGGTTGTAGCAAGCTTGTGGGTTGCTGCAGTGATAGGAAGCTGGTGTAATTTTCTGACCGTTTTGTACATTGGTTTTGTTGCTGCTCACACATTGCCAGTTCTGTACGAGAGATACGAAGATCAGGTCGACAACTTTGCATACCAGGTCCTTGGGCAGCTTCAACATAATTATCGGAAGCTCGATACCGGTGTCCTCAGCAGGATCCCAAAAGGAAAGGTCAATTGGAAGAAGCATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

249

Amino Acids

27.81

Weight (kDa)

9.14

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 354
AccB7I CCANNNNNTGG 2 cut(s) 92, 169
AccI GTMKAC 1 cut(s) 633
AclWI GGATC 3 cut(s) 33, 703, 716
AcsI RAATTY 3 cut(s) 343, 458, 487
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 3 cut(s) 381, 572, 611
AfiI CCNNNNNNNGG 2 cut(s) 92, 169
AgeI ACCGGT 1 cut(s) 692
AgsI TTSAA 7 cut(s) 34, 69, 130, 266, 467, 493, 668
AjnI CCWGG 2 cut(s) 251, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 712, 744
AluBI AGCT 5 cut(s) 224, 519, 546, 664, 685
AluI AGCT 5 cut(s) 224, 519, 546, 664, 685
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 3 cut(s) 33, 703, 716
ApeKI GCWGC 3 cut(s) 530, 587, 661
ApoI RAATTY 3 cut(s) 343, 458, 487
ArsI GACNNNNNNTTYG 2 cut(s) 615, 647
AseI ATTAAT 1 cut(s) 444
AsiGI ACCGGT 1 cut(s) 692
Asp700I GAANNNNTTC 1 cut(s) 462
AspS9I GGNCC 2 cut(s) 366, 652
AvaII GGWCC 2 cut(s) 366, 652
AxyI CCTNAGG 1 cut(s) 21
BaeI ACNNNNGTAYC 2 cut(s) 681, 714
BamHI GGATCC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 261
BbvCI CCTCAGC 1 cut(s) 701
BbvI GCAGC 3 cut(s) 517, 574, 673
BccI CCATC 2 cut(s) 379, 431
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 2 cut(s) 253, 650
BclI TGATCA 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 531
BfuAI ACCTGC 1 cut(s) 354
BisI GCNGC 3 cut(s) 531, 588, 662
BlsI GCNGC 3 cut(s) 532, 589, 663
Bme1390I CCNGG 2 cut(s) 253, 650
Bme18I GGWCC 2 cut(s) 366, 652
BmgT120I GGNCC 2 cut(s) 366, 652
BmiI GGNNCC 2 cut(s) 368, 710
BmrFI CCNGG 2 cut(s) 253, 650
Bpu10I CCTNAGC 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 145
BsaJI CCNNGG 3 cut(s) 252, 453, 655
BsaWI WCCGGW 1 cut(s) 692
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 169
Bse118I RCCGGY 2 cut(s) 132, 692
Bse1I ACTGG 2 cut(s) 241, 602
Bse21I CCTNAGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 596
BseBI CCWGG 2 cut(s) 253, 650
BseDI CCNNGG 3 cut(s) 252, 453, 655
BseLI CCNNNNNNNGG 2 cut(s) 92, 169
BseMI GCAATG 1 cut(s) 596
BseMII CTCAG 4 cut(s) 12, 126, 341, 715
BseNI ACTGG 2 cut(s) 241, 602
BseXI GCAGC 3 cut(s) 517, 574, 673
BshTI ACCGGT 1 cut(s) 692
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 3 cut(s) 133, 351, 693
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 2 cut(s) 92, 169
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 261
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 4 cut(s) 25, 400, 625, 708
BspCNI CTCAG 4 cut(s) 13, 125, 340, 714
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 368, 710
BspMAI CTGCAG 1 cut(s) 535
BspMI ACCTGC 1 cut(s) 354
BspPI GGATC 3 cut(s) 33, 703, 716
BsrDI GCAATG 1 cut(s) 596
BsrFI RCCGGY 2 cut(s) 132, 692
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 2 cut(s) 241, 602
BssAI RCCGGY 2 cut(s) 132, 692
BssECI CCNNGG 3 cut(s) 252, 453, 655
BssMI GATC 4 cut(s) 25, 400, 625, 708
BssNI GRCGYC 1 cut(s) 145
BssT1I CCWWGG 2 cut(s) 453, 655
Bst2UI CCWGG 2 cut(s) 253, 650
Bst4CI ACNGT 2 cut(s) 247, 565
Bst6I CTCTTC 1 cut(s) 93
BstACI GRCGYC 1 cut(s) 145
BstAUI TGTACA 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 324, 517
BstDEI CTNAG 6 cut(s) 6, 21, 112, 123, 327, 701
BstKTI GATC 4 cut(s) 28, 403, 628, 711
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 25, 400, 625, 708
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstNI CCWGG 2 cut(s) 253, 650
BstSCI CCNGG 2 cut(s) 251, 648
BstSFI CTRYAG 1 cut(s) 531
BstV1I GCAGC 3 cut(s) 517, 574, 673
BstX2I RGATCY 2 cut(s) 25, 708
BstXI CCANNNNNNTGG 1 cut(s) 656
BstYI RGATCY 2 cut(s) 25, 708
Bsu36I CCTNAGG 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 1 cut(s) 540
BveI ACCTGC 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 324, 517
CciI TCATGA 1 cut(s) 436
Cfr10I RCCGGY 2 cut(s) 132, 692
Cfr13I GGNCC 2 cut(s) 366, 652
CseI GACGC 1 cut(s) 153
CsiI ACCWGGT 1 cut(s) 648
Csp6I GTAC 3 cut(s) 380, 571, 610
CspAI ACCGGT 1 cut(s) 692
CviAII CATG 2 cut(s) 437, 740
CviQI GTAC 3 cut(s) 380, 571, 610
DdeI CTNAG 6 cut(s) 6, 21, 112, 123, 327, 701
DpnI GATC 4 cut(s) 27, 402, 627, 710
DpnII GATC 4 cut(s) 25, 400, 625, 708
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 453, 655
Eco32I GATATC 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 366, 652
Eco57I CTGAAG 1 cut(s) 396
Eco81I CCTNAGG 1 cut(s) 21
EcoO109I RGGNCCY 2 cut(s) 366, 652
EcoRII CCWGG 2 cut(s) 251, 648
EcoRV GATATC 1 cut(s) 219
EcoT14I CCWWGG 2 cut(s) 453, 655
ErhI CCWWGG 2 cut(s) 453, 655
FaeI CATG 2 cut(s) 440, 743
FaiI YATR 7 cut(s) 320, 356, 438, 506, 646, 672, 741
FaqI GGGAC 1 cut(s) 352
FatI CATG 2 cut(s) 436, 739
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 3 cut(s) 531, 588, 662
Fsp4HI GCNGC 3 cut(s) 531, 588, 662
FspBI CTAG 1 cut(s) 225
GluI GCNGC 3 cut(s) 531, 588, 662
HapII CCGG 3 cut(s) 133, 351, 693
HgaI GACGC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 2 cut(s) 440, 743
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 1 cut(s) 289
HpaII CCGG 3 cut(s) 133, 351, 693
Hpy166II GTNNAC 2 cut(s) 160, 634
Hpy188I TCNGA 3 cut(s) 376, 561, 681
Hpy188III TCNNGA 5 cut(s) 20, 286, 427, 437, 467
Hpy8I GTNNAC 2 cut(s) 160, 634
HpyCH4III ACNGT 2 cut(s) 247, 565
HpyCH4V TGCA 4 cut(s) 242, 476, 533, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 6 cut(s) 6, 21, 112, 123, 327, 701
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 2 cut(s) 440, 743
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 4 cut(s) 25, 400, 625, 708
Lsp1109I GCAGC 3 cut(s) 517, 574, 673
MabI ACCWGGT 1 cut(s) 648
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 115, 247
MalI GATC 4 cut(s) 27, 402, 627, 710
MboI GATC 4 cut(s) 25, 400, 625, 708
MboII GAAGA 4 cut(s) 110, 305, 635, 745
MfeI CAATTG 1 cut(s) 727
MflI RGATCY 2 cut(s) 25, 708
MhlI GDGCHC 1 cut(s) 261
MlyI GAGTC 1 cut(s) 283
MnlI CCTC 6 cut(s) 16, 170, 198, 393, 476, 710
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 2 cut(s) 233, 444
MspI CCGG 3 cut(s) 133, 351, 693
MspR9I CCNGG 2 cut(s) 253, 650
MunI CAATTG 1 cut(s) 727
MvaI CCWGG 2 cut(s) 253, 650
MwoI GCNNNNNNNGC 1 cut(s) 360
NdeII GATC 4 cut(s) 25, 400, 625, 708
NlaIII CATG 2 cut(s) 440, 743
NlaIV GGNNCC 2 cut(s) 368, 710
NmuCI GTSAC 1 cut(s) 115
PagI TCATGA 1 cut(s) 436
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 462
PflMI CCANNNNNTGG 2 cut(s) 92, 169
PinAI ACCGGT 1 cut(s) 692
PkrI GCNGC 3 cut(s) 532, 589, 663
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 2 cut(s) 366, 652
PshBI ATTAAT 1 cut(s) 444
Psp5II RGGWCCY 2 cut(s) 366, 652
Psp6I CCWGG 2 cut(s) 251, 648
PspGI CCWGG 2 cut(s) 251, 648
PspN4I GGNNCC 2 cut(s) 368, 710
PspPI GGNCC 2 cut(s) 366, 652
PspPPI RGGWCCY 2 cut(s) 366, 652
PstI CTGCAG 1 cut(s) 535
PsuI RGATCY 2 cut(s) 25, 708
RsaI GTAC 3 cut(s) 381, 572, 611
RsaNI GTAC 3 cut(s) 380, 571, 610
SalI GTCGAC 1 cut(s) 632
SaqAI TTAA 2 cut(s) 233, 444
SatI GCNGC 3 cut(s) 531, 588, 662
Sau3AI GATC 4 cut(s) 25, 400, 625, 708
Sau96I GGNCC 2 cut(s) 366, 652
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 2 cut(s) 253, 650
SduI GDGCHC 1 cut(s) 261
SexAI ACCWGGT 1 cut(s) 648
SfcI CTRYAG 1 cut(s) 531
SinI GGWCC 2 cut(s) 366, 652
SspI AATATT 1 cut(s) 418
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 251, 648
StyI CCWWGG 2 cut(s) 453, 655
TaaI ACNGT 2 cut(s) 247, 565
TaqI TCGA 4 cut(s) 428, 448, 633, 687
TatI WGTACW 1 cut(s) 570
Tru1I TTAA 2 cut(s) 233, 444
Tru9I TTAA 2 cut(s) 233, 444
TscAI CASTG 1 cut(s) 540
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 3 cut(s) 530, 587, 661
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 453
TspRI CASTG 1 cut(s) 540
Van91I CCANNNNNTGG 2 cut(s) 92, 169
VpaK11BI GGWCC 2 cut(s) 366, 652
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 3 cut(s) 343, 458, 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.