Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005366.1

Orthogroup ID

OG0006895

Physical Location & Seq

Genomic Coordinates Reverse (-)

30162 .. 32425

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005366.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgcctgagaaaataactgctgaggatcttttgaacaacattgcgggcacaatagctgaaagtagttcaaaacagaaatctgtgtctttttttggcgacgacaaatcagactctgtcggttctcagttgaatcggctattcggacgccaaaaacctgttcaccatcttctgggtggaggaaaatctgctgacgtgttgttgtggaggaacaaaaagatatcagctagtgttttaactggtgcaacttttgtttgggtgctctttgaatggctgaattatcatttcttgactcttgtgggttttgctttggtccttggaatgcttgctcaatttctctggtcaaatttttcgggattggttaacaggtcctcatcaaaaatacctcgccttgttctaccagaggacttattcgtcaacattgccatctcaattggtgctgaaattaatagagggctggagtttattcaggatgttgcttgtggaggaaatctgaagcaatttcttatggttgtagcaagcttgtgggctgcttcagtgataggaagctggtgcaactttctgacagttctgtacattggtttcattgctgctcatacattgccagttttgtatgagaattatgacgatcagatcgacaactttgtgtactcagtctttggacagcttcaaaatcattatcgcaagctggatactagtgtcctcagcaggatccctaaaggaaatttgaaggcaaagaaacatgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Reticulon

Protein Analysis

248

Amino Acids

27.54

Weight (kDa)

8.8

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10260 AT3G10260 AT3G10260
fragaria_vesca	FvH4_6g38910 FvH4_6g38910 FvH4_6g38910 FvH4_6g38910 FvH4_6g38910 FvH4_6g38910
malus_domestica	MD09G1146200.v1.1 MD17G1132800.v1.1
prunus_persica	Prupe.3G179500_v2.0.a1 Prupe.3G179500_v2.0.a1 Prupe.3G179500_v2.0.a1
pyrus_communis	pycom09g06650 pycom17g12640
rosa_chinensis	RchiOBHm_Chr2g0152491
rosa_laevigata	RLG00000020639
rosa_multiflora	Rmu_sc0005366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00095670
rosa_rugosa	Rorug02G0433200 Rorug02G0433200 Rorug02G0433300
rosa_samantha	Rh2BG507200 Rh2CG481200
rosa_wichuraiana	Rw2G040740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	169
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	3 cut(s)	33, 703, 716
AcsI	RAATTY	2 cut(s)	343, 721
AcuI	CTGAAG	2 cut(s)	512, 516
AcyI	GRCGYC	1 cut(s)	145
AfaI	GTAC	2 cut(s)	572, 647
AfiI	CCNNNNNNNGG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	6 cut(s)	34, 69, 130, 266, 668, 727
AhlI	ACTAGT	1 cut(s)	692
AjiI	CACGTC	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	6 cut(s)	56, 224, 519, 546, 664, 685
AluI	AGCT	6 cut(s)	56, 224, 519, 546, 664, 685
Alw21I	GWGCWC	1 cut(s)	261
AlwI	GGATC	3 cut(s)	33, 703, 716
AlwNI	CAGNNNCTG	1 cut(s)	113
ApeKI	GCWGC	2 cut(s)	527, 587
ApoI	RAATTY	2 cut(s)	343, 721
AseI	ATTAAT	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	310, 366
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	310, 366
BaeGI	GKGCMC	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	681, 714
BamHI	GGATCC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	261
BbvCI	CCTCAGC	2 cut(s)	21, 701
BbvI	GCAGC	2 cut(s)	514, 574
BccI	CCATC	2 cut(s)	171, 431
BciVI	GTATCC	1 cut(s)	682
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	2 cut(s)	225, 693
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	2 cut(s)	528, 588
BlsI	GCNGC	2 cut(s)	529, 589
Bme18I	GGWCC	2 cut(s)	310, 366
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	310, 366
BmiI	GGNNCC	1 cut(s)	710
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	2 cut(s)	21, 701
BsaHI	GRCGYC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	241, 602
Bse3DI	GCAATG	4 cut(s)	39, 417, 582, 596
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	4 cut(s)	39, 417, 582, 596
BseMII	CTCAG	4 cut(s)	12, 137, 663, 715
BseNI	ACTGG	2 cut(s)	241, 602
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	514, 574
BsiHKAI	GWGCWC	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	324
Bsp1286I	GDGCHC	2 cut(s)	50, 261
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	4 cut(s)	25, 625, 630, 708
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	4 cut(s)	13, 136, 662, 714
BspLI	GGNNCC	1 cut(s)	710
BspPI	GGATC	3 cut(s)	33, 703, 716
BsrDI	GCAATG	4 cut(s)	39, 417, 582, 596
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	2 cut(s)	241, 602
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	4 cut(s)	25, 625, 630, 708
BssNI	GRCGYC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	565
BstACI	GRCGYC	1 cut(s)	145
BstAUI	TGTACA	1 cut(s)	570
BstC8I	GCNNGC	4 cut(s)	46, 324, 517, 683
BstDEI	CTNAG	5 cut(s)	6, 21, 123, 649, 701
BstF5I	GGATG	1 cut(s)	475
BstKTI	GATC	4 cut(s)	28, 628, 633, 711
BstMBI	GATC	4 cut(s)	25, 625, 630, 708
BstSLI	GKGCMC	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	514, 574
BstX2I	RGATCY	2 cut(s)	25, 708
BstYI	RGATCY	2 cut(s)	25, 708
BsuI	GTATCC	1 cut(s)	682
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	4 cut(s)	46, 324, 517, 683
CaiI	CAGNNNCTG	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	310, 366
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	571, 646
CviAII	CATG	1 cut(s)	740
CviQI	GTAC	2 cut(s)	571, 646
DdeI	CTNAG	5 cut(s)	6, 21, 123, 649, 701
DpnI	GATC	4 cut(s)	27, 627, 632, 710
DpnII	GATC	4 cut(s)	25, 625, 630, 708
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	310, 366
Eco57I	CTGAAG	2 cut(s)	512, 516
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRV	GATATC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	1 cut(s)	743
FaiI	YATR	5 cut(s)	506, 594, 612, 621, 741
FatI	CATG	1 cut(s)	739
FauI	CCCGC	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	528, 588
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	2 cut(s)	528, 588
FspBI	CTAG	2 cut(s)	225, 693
GluI	GCNGC	2 cut(s)	528, 588
GsuI	CTGGAG	1 cut(s)	476
HgaI	GACGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	743
HincII	GTYRAC	2 cut(s)	361, 415
HindII	GTYRAC	2 cut(s)	361, 415
HindIII	AAGCTT	1 cut(s)	517
HinfI	GANTC	3 cut(s)	110, 130, 289
HpaI	GTTAAC	1 cut(s)	361
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	4 cut(s)	160, 361, 415, 646
Hpy188I	TCNGA	5 cut(s)	109, 143, 492, 561, 630
Hpy188III	TCNNGA	3 cut(s)	286, 351, 467
Hpy8I	GTNNAC	4 cut(s)	160, 361, 415, 646
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	721
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	242, 552
HpyF3I	CTNAG	5 cut(s)	6, 21, 123, 649, 701
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	743
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	25, 625, 630, 708
Lsp1109I	GCAGC	2 cut(s)	514, 574
MaeI	CTAG	2 cut(s)	225, 693
MaeII	ACGT	1 cut(s)	192
MalI	GATC	4 cut(s)	27, 627, 632, 710
MboI	GATC	4 cut(s)	25, 625, 630, 708
MboII	GAAGA	1 cut(s)	158
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	2 cut(s)	25, 708
MhlI	GDGCHC	2 cut(s)	50, 261
MluCI	AATT	8 cut(s)	274, 329, 343, 429, 441, 497, 616, 721
MlyI	GAGTC	2 cut(s)	104, 283
MnlI	CCTC	9 cut(s)	16, 170, 198, 379, 393, 394, 443, 476, 710
MseI	TTAA	3 cut(s)	233, 360, 444
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	324
NdeII	GATC	4 cut(s)	25, 625, 630, 708
NlaIII	CATG	1 cut(s)	743
NlaIV	GGNNCC	1 cut(s)	710
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	113
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	529, 589
PleI	GAGTC	2 cut(s)	104, 283
PpsI	GAGTC	2 cut(s)	104, 283
PpuMI	RGGWCCY	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	710
PspPI	GGNCC	2 cut(s)	310, 366
PspPPI	RGGWCCY	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	25, 708
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	2 cut(s)	572, 647
RsaNI	GTAC	2 cut(s)	571, 646
SaqAI	TTAA	3 cut(s)	233, 360, 444
SatI	GCNGC	2 cut(s)	528, 588
Sau3AI	GATC	4 cut(s)	25, 625, 630, 708
Sau96I	GGNCC	2 cut(s)	310, 366
SchI	GAGTC	2 cut(s)	104, 283
SduI	GDGCHC	2 cut(s)	50, 261
SinI	GGWCC	2 cut(s)	310, 366
SpeI	ACTAGT	1 cut(s)	692
Sse9I	AATT	8 cut(s)	274, 329, 343, 429, 441, 497, 616, 721
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	225, 693
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	565
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	633
TasI	AATT	8 cut(s)	274, 329, 343, 429, 441, 497, 616, 721
TatI	WGTACW	2 cut(s)	570, 645
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	3 cut(s)	233, 360, 444
Tru9I	TTAA	3 cut(s)	233, 360, 444
TscAI	CASTG	1 cut(s)	540
TseI	GCWGC	2 cut(s)	527, 587
TspDTI	ATGAA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	540
Tth111I	GACNNNGTC	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	169
VpaK11BI	GGWCC	2 cut(s)	310, 366
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	2 cut(s)	343, 721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XspI	CTAG	2 cut(s)	225, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.