FvH4_6g39260

36.4 kDa proline-rich

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
31045815 .. 31046762
948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39260.t1

Sequence Viewer

Length: 948 bp
ATGGGGACGAACTATGTTCTCGCTCTGCTCTTGGTTCTGATTCTCAACTTGGGAAGTTTCCTCACTTCTCTAGCAAACGCTCCCTACTGTGCACCACCGACGTACCCTCCAAAGTTCCCTCCCAAACACCCTCCTCATGTTAAACCACCCATTCACCCTAAACCACCCGTACACCCACCGCATGTGAAACCACCAGTAAAACCACCGCATGTGAAGCCTCCCTACACTCCCAAACCACCAGTGAAACCACCGCATGTGAAGCCTCCTTACACTCCCAAACCACCCGTAAAGCCACCGCATGTGAAACCTCCCTACATTCCCAAACCACCGGTAAAACCGCCGCATGTGAAGCCTCCTTACATTCCCAAACCACCGGTGAAACCGCCGCACGTGAAGCCTCCTTACATTCCCAAACCACCGATTGTCCACCCACCCTTCATCCCAAAACCACCAATCGTGCACCCACCCTTCATCCCAAAACCACCAATCGTGCATCCACCTTTCATCCCTAAACCACCAATTGTCTACCCACCAGTTATGCCCAAGCCCCCCGTGTACCCTCCACCGGTGTACCCAAGTCCACCCCCAACACCTGTCGTGACCCCTAGCCCGCCTCCGCCACCAACAGAGACACCCTGCCCTCCTCCACCACCTAAAGTAGTGCCATACCCACCGCCACCGCCAAAGGACACGTGTCCGATCGACGCTCTCAAGCTAGGAGCTTGTGTAGACGTTCTCGGTGGGCTGATTCACGTTGGGATTGGGGGCAATGCTAAAGACGCTTGCTGTCCTGTGCTTCAAGGACTGCTGGACTTGGACGCCGCCATTTGCCTCTGCACCACCATCAGGCTCAAGCTCCTTAACATCAACATCATCATACCCCTTGCTCTTCAGGTCCTCATCGACTGTGGGAAGACTCCACCCGATGGATTCAAGTGTCCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

316

Amino Acids

33.83

Weight (kDa)

9.67

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 231 - 314 4.1e-28 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 232 - 313 9.4e-12 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014897)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 926
AccI GTMKAC 2 cut(s) 525, 729
AcuI CTGAAG 1 cut(s) 875
AcvI CACGTG 2 cut(s) 391, 693
AcyI GRCGYC 1 cut(s) 819
AfaI GTAC 4 cut(s) 104, 171, 557, 572
AfiI CCNNNNNNNGG 3 cut(s) 565, 846, 926
AflIII ACRYGT 2 cut(s) 690, 692
AgeI ACCGGT 3 cut(s) 328, 373, 565
AgsI TTSAA 2 cut(s) 800, 934
AluBI AGCT 3 cut(s) 715, 722, 856
AluI AGCT 3 cut(s) 715, 722, 856
Alw21I GWGCWC 2 cut(s) 94, 462
Alw26I GTCTC 1 cut(s) 623
Alw44I GTGCAC 2 cut(s) 90, 458
ApaLI GTGCAC 2 cut(s) 90, 458
AsiGI ACCGGT 3 cut(s) 328, 373, 565
AspS9I GGNCC 1 cut(s) 895
AsuHPI GGTGA 2 cut(s) 146, 388
AvaII GGWCC 1 cut(s) 895
BaeGI GKGCMC 2 cut(s) 94, 462
BaeI ACNNNNGTAYC 4 cut(s) 86, 119, 554, 587
BarI GAAGNNNNNNTAC 8 cut(s) 206, 238, 251, 283, 341, 373, 386, 418
BbrPI CACGTG 2 cut(s) 391, 693
BbsI GAAGAC 1 cut(s) 920
Bbv12I GWGCWC 2 cut(s) 94, 462
BccI CCATC 2 cut(s) 851, 920
BcoDI GTCTC 1 cut(s) 623
BfaI CTAG 3 cut(s) 71, 606, 716
BisI GCNGC 3 cut(s) 341, 386, 822
BlsI GCNGC 3 cut(s) 342, 387, 823
Bme18I GGWCC 1 cut(s) 895
BmgT120I GGNCC 1 cut(s) 895
BmsI GCATC 1 cut(s) 502
BoxI GACNNNNGTC 1 cut(s) 693
BpiI GAAGAC 1 cut(s) 920
BpuEI CTTGAG 2 cut(s) 695, 836
BsaAI YACGTR 2 cut(s) 391, 693
BsaHI GRCGYC 1 cut(s) 819
BsaWI WCCGGW 3 cut(s) 328, 373, 565
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 711, 741
Bsc4I CCNNNNNNNGG 3 cut(s) 565, 846, 926
Bse118I RCCGGY 3 cut(s) 328, 373, 565
Bse1I ACTGG 3 cut(s) 194, 239, 533
Bse3DI GCAATG 1 cut(s) 775
BseGI GGATG 4 cut(s) 438, 471, 493, 504
BseLI CCNNNNNNNGG 3 cut(s) 565, 846, 926
BseMI GCAATG 1 cut(s) 775
BseNI ACTGG 3 cut(s) 194, 239, 533
BseRI GAGGAG 2 cut(s) 123, 633
BseSI GKGCMC 2 cut(s) 94, 462
BsgI GTGCAG 1 cut(s) 820
Bsh1285I CGRYCG 1 cut(s) 702
BshTI ACCGGT 3 cut(s) 328, 373, 565
BsiEI CGRYCG 1 cut(s) 702
BsiHKAI GWGCWC 2 cut(s) 94, 462
BsiSI CCGG 3 cut(s) 329, 374, 566
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 3 cut(s) 565, 846, 926
BsmAI GTCTC 1 cut(s) 623
BsmFI GGGAC 1 cut(s) 19
Bsp1286I GDGCHC 2 cut(s) 94, 462
Bsp143I GATC 1 cut(s) 699
BspQI GCTCTTC 1 cut(s) 894
BsrDI GCAATG 1 cut(s) 775
BsrFI RCCGGY 3 cut(s) 328, 373, 565
BsrI ACTGG 3 cut(s) 194, 239, 533
BssAI RCCGGY 3 cut(s) 328, 373, 565
BssMI GATC 1 cut(s) 699
BssNI GRCGYC 1 cut(s) 819
Bst4CI ACNGT 2 cut(s) 89, 908
Bst6I CTCTTC 1 cut(s) 894
BstACI GRCGYC 1 cut(s) 819
BstBAI YACGTR 2 cut(s) 391, 693
BstC8I GCNNGC 2 cut(s) 611, 784
BstF5I GGATG 4 cut(s) 438, 471, 493, 504
BstKTI GATC 1 cut(s) 702
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 1 cut(s) 699
BstMCI CGRYCG 1 cut(s) 702
BstMWI GCNNNNNNNGC 5 cut(s) 214, 259, 349, 394, 779
BstNSI RCATGY 5 cut(s) 185, 212, 257, 302, 347
BstPAI GACNNNNGTC 1 cut(s) 693
BstSLI GKGCMC 2 cut(s) 94, 462
BstV2I GAAGAC 1 cut(s) 920
BtsCI GGATG 4 cut(s) 438, 471, 493, 504
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 2 cut(s) 611, 784
Cfr10I RCCGGY 3 cut(s) 328, 373, 565
Cfr13I GGNCC 1 cut(s) 895
CseI GACGC 3 cut(s) 713, 788, 827
Csp6I GTAC 4 cut(s) 103, 170, 556, 571
CspAI ACCGGT 3 cut(s) 328, 373, 565
CviAII CATG 6 cut(s) 137, 182, 209, 254, 299, 344
CviQI GTAC 4 cut(s) 103, 170, 556, 571
DpnI GATC 1 cut(s) 701
DpnII GATC 1 cut(s) 699
Eam1104I CTCTTC 1 cut(s) 894
EarI CTCTTC 1 cut(s) 894
EciI GGCGGA 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 895
Eco57I CTGAAG 1 cut(s) 875
Eco72I CACGTG 2 cut(s) 391, 693
EcoO109I RGGNCCY 1 cut(s) 895
FaeI CATG 6 cut(s) 140, 185, 212, 257, 302, 347
FaqI GGGAC 1 cut(s) 19
FatI CATG 6 cut(s) 136, 181, 208, 253, 298, 343
FauI CCCGC 1 cut(s) 618
FblI GTMKAC 2 cut(s) 525, 729
Fnu4HI GCNGC 3 cut(s) 341, 386, 822
FokI GGATG 4 cut(s) 425, 458, 480, 491
Fsp4HI GCNGC 3 cut(s) 341, 386, 822
FspBI CTAG 3 cut(s) 71, 606, 716
GluI GCNGC 3 cut(s) 341, 386, 822
HapII CCGG 3 cut(s) 329, 374, 566
HgaI GACGC 3 cut(s) 713, 788, 827
Hin1I GRCGYC 1 cut(s) 819
Hin1II CATG 6 cut(s) 140, 185, 212, 257, 302, 347
HinfI GANTC 4 cut(s) 40, 748, 916, 930
HpaII CCGG 3 cut(s) 329, 374, 566
HphI GGTGA 2 cut(s) 146, 388
Hpy166II GTNNAC 9 cut(s) 92, 172, 427, 460, 526, 556, 571, 581, 730
Hpy188I TCNGA 2 cut(s) 39, 699
Hpy188III TCNNGA 1 cut(s) 598
Hpy8I GTNNAC 9 cut(s) 92, 172, 427, 460, 526, 556, 571, 581, 730
Hpy99I CGWCG 2 cut(s) 103, 707
HpyAV CCTTC 2 cut(s) 445, 478
HpyCH4III ACNGT 2 cut(s) 89, 908
HpyCH4IV ACGT 5 cut(s) 101, 390, 692, 732, 753
HpyCH4V TGCA 4 cut(s) 92, 460, 493, 837
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 259, 349, 394, 779
HpySE526I ACGT 5 cut(s) 101, 390, 692, 732, 753
Hsp92I GRCGYC 1 cut(s) 819
Hsp92II CATG 6 cut(s) 140, 185, 212, 257, 302, 347
Kzo9I GATC 1 cut(s) 699
LguI GCTCTTC 1 cut(s) 894
LmnI GCTCC 3 cut(s) 85, 719, 861
LweI GCATC 1 cut(s) 502
MaeI CTAG 3 cut(s) 71, 606, 716
MaeII ACGT 5 cut(s) 101, 390, 692, 732, 753
MaeIII GTNAC 1 cut(s) 598
MalI GATC 1 cut(s) 701
MboI GATC 1 cut(s) 699
MboII GAAGA 2 cut(s) 881, 925
MfeI CAATTG 1 cut(s) 519
MhlI GDGCHC 2 cut(s) 94, 462
MluCI AATT 1 cut(s) 519
MlyI GAGTC 1 cut(s) 910
MseI TTAA 2 cut(s) 141, 861
MspI CCGG 3 cut(s) 329, 374, 566
MunI CAATTG 1 cut(s) 519
MwoI GCNNNNNNNGC 5 cut(s) 214, 259, 349, 394, 779
NdeII GATC 1 cut(s) 699
NlaIII CATG 6 cut(s) 140, 185, 212, 257, 302, 347
NmuCI GTSAC 1 cut(s) 598
NspI RCATGY 5 cut(s) 185, 212, 257, 302, 347
PciSI GCTCTTC 1 cut(s) 894
PfeI GAWTC 3 cut(s) 40, 748, 930
PflMI CCANNNNNTGG 1 cut(s) 926
PinAI ACCGGT 3 cut(s) 328, 373, 565
PkrI GCNGC 3 cut(s) 342, 387, 823
Ple19I CGATCG 1 cut(s) 702
PleI GAGTC 1 cut(s) 910
PmaCI CACGTG 2 cut(s) 391, 693
PmlI CACGTG 2 cut(s) 391, 693
PpsI GAGTC 1 cut(s) 910
Ppu21I YACGTR 2 cut(s) 391, 693
PpuMI RGGWCCY 1 cut(s) 895
PshAI GACNNNNGTC 1 cut(s) 693
Psp5II RGGWCCY 1 cut(s) 895
PspCI CACGTG 2 cut(s) 391, 693
PspPI GGNCC 1 cut(s) 895
PspPPI RGGWCCY 1 cut(s) 895
PvuI CGATCG 1 cut(s) 702
RsaI GTAC 4 cut(s) 104, 171, 557, 572
RsaNI GTAC 4 cut(s) 103, 170, 556, 571
SapI GCTCTTC 1 cut(s) 894
SaqAI TTAA 2 cut(s) 141, 861
SatI GCNGC 3 cut(s) 341, 386, 822
Sau3AI GATC 1 cut(s) 699
Sau96I GGNCC 1 cut(s) 895
SchI GAGTC 1 cut(s) 910
SduI GDGCHC 2 cut(s) 94, 462
SfaNI GCATC 1 cut(s) 502
SgrAI CRCCGGYG 2 cut(s) 373, 565
SinI GGWCC 1 cut(s) 895
SmlI CTYRAG 2 cut(s) 710, 851
SmoI CTYRAG 2 cut(s) 710, 851
Sse9I AATT 1 cut(s) 519
SspMI CTAG 3 cut(s) 71, 606, 716
TaaI ACNGT 2 cut(s) 89, 908
TaiI ACGT 5 cut(s) 104, 393, 695, 735, 756
TaqI TCGA 2 cut(s) 702, 903
TasI AATT 1 cut(s) 519
TauI GCSGC 3 cut(s) 343, 388, 824
TfiI GAWTC 3 cut(s) 40, 748, 930
Tru1I TTAA 2 cut(s) 141, 861
Tru9I TTAA 2 cut(s) 141, 861
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 598
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 4 cut(s) 427, 460, 493, 933
TspRI CASTG 1 cut(s) 246
Van91I CCANNNNNTGG 1 cut(s) 926
VneI GTGCAC 2 cut(s) 90, 458
VpaK11BI GGWCC 1 cut(s) 895
XceI RCATGY 5 cut(s) 185, 212, 257, 302, 347
XmiI GTMKAC 2 cut(s) 525, 729
XspI CTAG 3 cut(s) 71, 606, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.