RLG00000020684

36.4 kDa proline-rich

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
67610969 .. 67611970
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020684

Sequence Viewer

Length: 1002 bp
ATGGGGACGAGCTATGTTCTGGCTTTGCTCTTGGTTCTGATTCTCAACTTGGGAAGTTTCCTCACTTCTCTTGCAAACGCTCCCTACTGTCCACCACCGACATACCCTCCTAAGTTCCCCCCCAAACACCCTCCTTATGTCAAACCACCATTTCACCCTAAACCACCCAAACAACCACCACATGTGAAACCACCAGTAAAACCACCACATGTGAAGCCTCCCTACATTCCCAAACCGCCCGTAAAACCACCGCATGTGAAGCCTCCATACATTCCCAAACCGCCAGTGAAACCGCCACACGTGAAGCCTCCCTACATTCCCAAACCACCAGTGAAGCCACCACATGTGAAACCTCCCTATGTACCAACACCACAACCACCACACTATCCCAAACCACCAATTGTCCACCCGCCCTTCATCCCAAAACCACCAATTGTGCACCCTCCCTTCATCCCAAAACCACCAATTGTCCACCCACCTTTCATCCCTAAACCACCAATTGTGAACCCACCAATTACTCCCAAGCCCCCCGTGTACCCTCCACCGGTGTACCCTAGCCCGCCACCTAAACCACCAATTGTGAACCCACCAACTCCCAAGCCCCCCGTGTACCCTCCACCGGTGTACCCTAGCCCGCCACCGACACCTGTTGTGACCCCTAGCCCGCAGCCACCAGCAACAGAAACACCCTGTCCTCCTCCACCACCTTCAGTAGTGCCATACCCACCGCCGCCACCAAAAAACACGTGTCCCATCGACGCTCTCAAGCTAGGGGCTTGTGTGGACGTGCTTGGTGGGCTGATTCACATTGGGATAGGGGAAAGTGCTAAAGACGCTTGCTGTCCTGTGCTTCAAGGACTGCTGGACTTGGACGCCGCCATTTGCCTCTGCACCACCATCAAGCTTAAGCTCCTTAACATCAACATAATCATACCCCTTGCTCTTCAGGTCCTCATCGACTGTGGGAAGACACCACCCGAGGGATTCAAGTGTCCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

334

Amino Acids

35.76

Weight (kDa)

9.61

Isoelectric Point (pI)

66.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 249 - 332 1.6e-28 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 250 - 331 6.9e-12 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014897)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 693, 929
AcvI CACGTG 2 cut(s) 301, 747
AcyI GRCGYC 1 cut(s) 873
AfaI GTAC 5 cut(s) 363, 536, 551, 611, 626
AfiI CCNNNNNNNGG 3 cut(s) 544, 619, 980
AflII CTTAAG 1 cut(s) 905
AflIII ACRYGT 6 cut(s) 181, 208, 298, 343, 744, 746
AgeI ACCGGT 2 cut(s) 544, 619
AgsI TTSAA 2 cut(s) 854, 988
AjiI CACGTC 1 cut(s) 787
AluBI AGCT 4 cut(s) 12, 769, 904, 910
AluI AGCT 4 cut(s) 12, 769, 904, 910
Alw21I GWGCWC 1 cut(s) 441
Alw44I GTGCAC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 977
ApaLI GTGCAC 1 cut(s) 437
ApeKI GCWGC 1 cut(s) 667
AsiGI ACCGGT 2 cut(s) 544, 619
AspS9I GGNCC 1 cut(s) 949
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 1 cut(s) 949
BaeGI GKGCMC 1 cut(s) 441
BaeI ACNNNNGTAYC 4 cut(s) 533, 566, 608, 641
BarI GAAGNNNNNNTAC 6 cut(s) 206, 238, 251, 283, 296, 328
BbrPI CACGTG 2 cut(s) 301, 747
BbsI GAAGAC 1 cut(s) 974
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 679
BccI CCATC 2 cut(s) 761, 905
BfaI CTAG 4 cut(s) 555, 630, 660, 770
BfrI CTTAAG 1 cut(s) 905
BisI GCNGC 3 cut(s) 668, 731, 876
BlsI GCNGC 3 cut(s) 669, 732, 877
Bme18I GGWCC 1 cut(s) 949
BmeT110I CYCGRG 1 cut(s) 977
BmgBI CACGTC 1 cut(s) 787
BmgT120I GGNCC 1 cut(s) 949
BpiI GAAGAC 1 cut(s) 974
BpuEI CTTGAG 1 cut(s) 749
BsaAI YACGTR 2 cut(s) 301, 747
BsaHI GRCGYC 1 cut(s) 873
BsaJI CCNNGG 1 cut(s) 978
BsaWI WCCGGW 2 cut(s) 544, 619
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 544, 619, 980
Bse118I RCCGGY 2 cut(s) 544, 619
Bse1I ACTGG 3 cut(s) 194, 284, 329
BseDI CCNNGG 1 cut(s) 978
BseGI GGATG 3 cut(s) 417, 450, 483
BseLI CCNNNNNNNGG 3 cut(s) 544, 619, 980
BseNI ACTGG 3 cut(s) 194, 284, 329
BseRI GAGGAG 1 cut(s) 687
BseSI GKGCMC 1 cut(s) 441
BseXI GCAGC 1 cut(s) 679
BsgI GTGCAG 1 cut(s) 874
BshTI ACCGGT 2 cut(s) 544, 619
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 2 cut(s) 545, 620
BslFI GGGAC 2 cut(s) 19, 735
BslI CCNNNNNNNGG 3 cut(s) 544, 619, 980
BsmFI GGGAC 2 cut(s) 19, 735
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 1 cut(s) 441
BspQI GCTCTTC 1 cut(s) 948
BspTI CTTAAG 1 cut(s) 905
BsrFI RCCGGY 2 cut(s) 544, 619
BsrI ACTGG 3 cut(s) 194, 284, 329
BssAI RCCGGY 2 cut(s) 544, 619
BssECI CCNNGG 1 cut(s) 978
BssNI GRCGYC 1 cut(s) 873
Bst4CI ACNGT 2 cut(s) 89, 962
Bst6I CTCTTC 1 cut(s) 948
BstACI GRCGYC 1 cut(s) 873
BstAFI CTTAAG 1 cut(s) 905
BstBAI YACGTR 2 cut(s) 301, 747
BstC8I GCNNGC 4 cut(s) 560, 635, 665, 838
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 3 cut(s) 417, 450, 483
BstMWI GCNNNNNNNGC 3 cut(s) 259, 796, 833
BstNSI RCATGY 4 cut(s) 185, 212, 257, 347
BstSLI GKGCMC 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 679
BstV2I GAAGAC 1 cut(s) 974
BtrI CACGTC 1 cut(s) 787
BtsCI GGATG 3 cut(s) 417, 450, 483
BtsIMutI CAGTG 2 cut(s) 291, 336
Cac8I GCNNGC 4 cut(s) 560, 635, 665, 838
Cfr10I RCCGGY 2 cut(s) 544, 619
Cfr13I GGNCC 1 cut(s) 949
CseI GACGC 3 cut(s) 767, 842, 881
Csp6I GTAC 5 cut(s) 362, 535, 550, 610, 625
CspAI ACCGGT 2 cut(s) 544, 619
CviAII CATG 4 cut(s) 182, 209, 254, 344
CviQI GTAC 5 cut(s) 362, 535, 550, 610, 625
DdeI CTNAG 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 948
EarI CTCTTC 1 cut(s) 948
Eco47I GGWCC 1 cut(s) 949
Eco57I CTGAAG 2 cut(s) 693, 929
Eco72I CACGTG 2 cut(s) 301, 747
Eco88I CYCGRG 1 cut(s) 977
EcoO109I RGGNCCY 1 cut(s) 949
FaeI CATG 4 cut(s) 185, 212, 257, 347
FaqI GGGAC 2 cut(s) 19, 735
FatI CATG 4 cut(s) 181, 208, 253, 343
FauI CCCGC 4 cut(s) 417, 567, 642, 672
Fnu4HI GCNGC 3 cut(s) 668, 731, 876
FokI GGATG 3 cut(s) 404, 437, 470
Fsp4HI GCNGC 3 cut(s) 668, 731, 876
FspBI CTAG 4 cut(s) 555, 630, 660, 770
GluI GCNGC 3 cut(s) 668, 731, 876
HapII CCGG 2 cut(s) 545, 620
HgaI GACGC 3 cut(s) 767, 842, 881
Hin1I GRCGYC 1 cut(s) 873
Hin1II CATG 4 cut(s) 185, 212, 257, 347
HindIII AAGCTT 1 cut(s) 902
HinfI GANTC 3 cut(s) 40, 802, 984
HpaII CCGG 2 cut(s) 545, 620
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 39
Hpy99I CGWCG 1 cut(s) 761
HpyAV CCTTC 3 cut(s) 424, 457, 717
HpyCH4III ACNGT 2 cut(s) 89, 962
HpyCH4IV ACGT 3 cut(s) 300, 746, 786
HpyCH4V TGCA 3 cut(s) 74, 439, 891
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 796, 833
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 3 cut(s) 300, 746, 786
Hsp92I GRCGYC 1 cut(s) 873
Hsp92II CATG 4 cut(s) 185, 212, 257, 347
LguI GCTCTTC 1 cut(s) 948
LmnI GCTCC 2 cut(s) 85, 915
Lsp1109I GCAGC 1 cut(s) 679
MaeI CTAG 4 cut(s) 555, 630, 660, 770
MaeII ACGT 3 cut(s) 300, 746, 786
MaeIII GTNAC 1 cut(s) 652
MboII GAAGA 2 cut(s) 935, 979
MfeI CAATTG 5 cut(s) 399, 432, 465, 498, 576
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 6 cut(s) 399, 432, 465, 498, 513, 576
MseI TTAA 2 cut(s) 906, 915
MspCI CTTAAG 1 cut(s) 905
MspI CCGG 2 cut(s) 545, 620
MunI CAATTG 5 cut(s) 399, 432, 465, 498, 576
MwoI GCNNNNNNNGC 3 cut(s) 259, 796, 833
NlaIII CATG 4 cut(s) 185, 212, 257, 347
NmuCI GTSAC 1 cut(s) 652
NspI RCATGY 4 cut(s) 185, 212, 257, 347
PciI ACATGT 3 cut(s) 181, 208, 343
PciSI GCTCTTC 1 cut(s) 948
PfeI GAWTC 3 cut(s) 40, 802, 984
PinAI ACCGGT 2 cut(s) 544, 619
PkrI GCNGC 3 cut(s) 669, 732, 877
PmaCI CACGTG 2 cut(s) 301, 747
PmlI CACGTG 2 cut(s) 301, 747
Ppu21I YACGTR 2 cut(s) 301, 747
PpuMI RGGWCCY 1 cut(s) 949
PscI ACATGT 3 cut(s) 181, 208, 343
Psp5II RGGWCCY 1 cut(s) 949
PspCI CACGTG 2 cut(s) 301, 747
PspPI GGNCC 1 cut(s) 949
PspPPI RGGWCCY 1 cut(s) 949
RsaI GTAC 5 cut(s) 363, 536, 551, 611, 626
RsaNI GTAC 5 cut(s) 362, 535, 550, 610, 625
SapI GCTCTTC 1 cut(s) 948
SaqAI TTAA 2 cut(s) 906, 915
SatI GCNGC 3 cut(s) 668, 731, 876
Sau96I GGNCC 1 cut(s) 949
SduI GDGCHC 1 cut(s) 441
SgrAI CRCCGGYG 2 cut(s) 544, 619
SinI GGWCC 1 cut(s) 949
SmlI CTYRAG 2 cut(s) 764, 905
SmoI CTYRAG 2 cut(s) 764, 905
Sse9I AATT 6 cut(s) 399, 432, 465, 498, 513, 576
SspMI CTAG 4 cut(s) 555, 630, 660, 770
TaaI ACNGT 2 cut(s) 89, 962
TaiI ACGT 3 cut(s) 303, 749, 789
TaqI TCGA 2 cut(s) 756, 957
TasI AATT 6 cut(s) 399, 432, 465, 498, 513, 576
TauI GCSGC 2 cut(s) 733, 878
TfiI GAWTC 3 cut(s) 40, 802, 984
Tru1I TTAA 2 cut(s) 906, 915
Tru9I TTAA 2 cut(s) 906, 915
TscAI CASTG 2 cut(s) 291, 336
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 1 cut(s) 667
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 4 cut(s) 406, 439, 472, 987
TspRI CASTG 2 cut(s) 291, 336
Vha464I CTTAAG 1 cut(s) 905
VneI GTGCAC 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 949
XceI RCATGY 4 cut(s) 185, 212, 257, 347
XspI CTAG 4 cut(s) 555, 630, 660, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.