Rh2BG511700

36.4 kDa proline-rich

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
71979827 .. 71981625
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG511700.1

Sequence Viewer

Length: 954 bp
ATGGGGACGAACTATGTTCTGGCTTTGCTCTTGGTTCTGATTCTCAACTTGGGAAGTTTCCTCACTTCTCTTGCAAATGCTCCGTACTGTCCACCACCGACATACCCTCCTAAGTTCCCCCCCAAACACCCTCCTCATGTCAAACCACCATTTCACCCTATACCACCCAAACACCCACCACATGTGAAACCACCAGTAAAACCACCACATGTGAAGCCTCCCTACATTCCCAAACCTCCCGTAAAACCGCCGCATGTGAAGCCTCCCTACATTCCCAAACCACCAGTGAAGCCGCCACACGTGAAGCCTCCCTACATTCCCAAACCACCAGTGAAGCCACCACATGTGAAACCTCCCTATGTACCAACACCACAACCACCAATTGTCCACCCTCCCTTCATCCCAAAACCACCAATTGTGCACCCTCCCTTCATCCCAAAACCACCAATTGTCCACCCACCTTTCATCCCTAAACCACCAATTACTCCCAAGCCCCCCGTGTACCCTAGCCCGCCACCTAAACCACCAATTGTGAACCCACCAACTCCCAAGCCCCCCGTGTACCCTCCACCGGTGTACCCTAGCCCGCCACCGACACCTGTTGTGACCCCTACCCCGCCGCCACCAGCAACAGAAACACCCTGTCCTCCTCCACCACCTTCAGTAGTGCCATACCCACCGCCGCCACCAAAAAACACGTGTCCCATCGACGCTCTCAAGCTAGGGGCTTGTGTGGACGTGCTTGGTGGGCTGATTCACGTTGGGATAGGGGAAAGTGCTAAAGACGCTTGCTGTCCTGTGCTTCAAGGACTGCTGGACTTGGACGCCGCCATTTGCCTCTGCACCACCATCAGGCTTAAGCTCCTTAACATCAACATTATCATACCCCTTGCTCTTCAGGTCCTCATCGACTGTGGGAAGACACCGCCCGATGGATTCAAGTGTCCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

317

Amino Acids

33.94

Weight (kDa)

9.6

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 233 - 316 1.3e-28 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 234 - 315 6.9e-12 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014897)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 645, 881
AcvI CACGTG 2 cut(s) 301, 699
AcyI GRCGYC 1 cut(s) 825
AfaI GTAC 5 cut(s) 86, 363, 503, 563, 578
AfiI CCNNNNNNNGG 3 cut(s) 571, 852, 932
AflII CTTAAG 1 cut(s) 857
AflIII ACRYGT 6 cut(s) 181, 208, 298, 343, 696, 698
AgeI ACCGGT 1 cut(s) 571
AgsI TTSAA 2 cut(s) 806, 940
AjiI CACGTC 1 cut(s) 739
AluBI AGCT 2 cut(s) 721, 862
AluI AGCT 2 cut(s) 721, 862
Alw21I GWGCWC 1 cut(s) 423
Alw44I GTGCAC 1 cut(s) 419
ApaLI GTGCAC 1 cut(s) 419
AsiGI ACCGGT 1 cut(s) 571
AspS9I GGNCC 1 cut(s) 901
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 901
BaeGI GKGCMC 1 cut(s) 423
BaeI ACNNNNGTAYC 2 cut(s) 560, 593
BarI GAAGNNNNNNTAC 6 cut(s) 206, 238, 251, 283, 296, 328
BbrPI CACGTG 2 cut(s) 301, 699
BbsI GAAGAC 1 cut(s) 926
Bbv12I GWGCWC 1 cut(s) 423
BccI CCATC 3 cut(s) 713, 857, 926
BfaI CTAG 3 cut(s) 507, 582, 722
BfrI CTTAAG 1 cut(s) 857
BisI GCNGC 5 cut(s) 251, 293, 620, 683, 828
BlsI GCNGC 5 cut(s) 252, 294, 621, 684, 829
Bme18I GGWCC 1 cut(s) 901
BmgBI CACGTC 1 cut(s) 739
BmgT120I GGNCC 1 cut(s) 901
BpiI GAAGAC 1 cut(s) 926
BpuEI CTTGAG 1 cut(s) 701
BsaAI YACGTR 2 cut(s) 301, 699
BsaHI GRCGYC 1 cut(s) 825
BsaWI WCCGGW 1 cut(s) 571
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 571, 852, 932
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 3 cut(s) 194, 284, 329
BseGI GGATG 3 cut(s) 399, 432, 465
BseLI CCNNNNNNNGG 3 cut(s) 571, 852, 932
BseNI ACTGG 3 cut(s) 194, 284, 329
BseRI GAGGAG 2 cut(s) 123, 639
BseSI GKGCMC 1 cut(s) 423
BsgI GTGCAG 1 cut(s) 826
BshTI ACCGGT 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 1 cut(s) 572
BslFI GGGAC 2 cut(s) 19, 687
BslI CCNNNNNNNGG 3 cut(s) 571, 852, 932
BsmFI GGGAC 2 cut(s) 19, 687
Bsp1286I GDGCHC 1 cut(s) 423
BspQI GCTCTTC 1 cut(s) 900
BspTI CTTAAG 1 cut(s) 857
BsrFI RCCGGY 1 cut(s) 571
BsrI ACTGG 3 cut(s) 194, 284, 329
BssAI RCCGGY 1 cut(s) 571
BssNI GRCGYC 1 cut(s) 825
Bst4CI ACNGT 2 cut(s) 89, 914
Bst6I CTCTTC 1 cut(s) 900
BstACI GRCGYC 1 cut(s) 825
BstAFI CTTAAG 1 cut(s) 857
BstBAI YACGTR 2 cut(s) 301, 699
BstC8I GCNNGC 3 cut(s) 512, 587, 790
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 3 cut(s) 399, 432, 465
BstMWI GCNNNNNNNGC 3 cut(s) 259, 748, 785
BstNSI RCATGY 4 cut(s) 185, 212, 257, 347
BstSLI GKGCMC 1 cut(s) 423
BstV2I GAAGAC 1 cut(s) 926
BtrI CACGTC 1 cut(s) 739
BtsCI GGATG 3 cut(s) 399, 432, 465
BtsIMutI CAGTG 2 cut(s) 291, 336
Cac8I GCNNGC 3 cut(s) 512, 587, 790
Cfr10I RCCGGY 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 901
CseI GACGC 3 cut(s) 719, 794, 833
Csp6I GTAC 5 cut(s) 85, 362, 502, 562, 577
CspAI ACCGGT 1 cut(s) 571
CviAII CATG 5 cut(s) 137, 182, 209, 254, 344
CviQI GTAC 5 cut(s) 85, 362, 502, 562, 577
DdeI CTNAG 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 900
EarI CTCTTC 1 cut(s) 900
Eco47I GGWCC 1 cut(s) 901
Eco57I CTGAAG 2 cut(s) 645, 881
Eco72I CACGTG 2 cut(s) 301, 699
EcoO109I RGGNCCY 1 cut(s) 901
FaeI CATG 5 cut(s) 140, 185, 212, 257, 347
FaqI GGGAC 2 cut(s) 19, 687
FatI CATG 5 cut(s) 136, 181, 208, 253, 343
FauI CCCGC 3 cut(s) 519, 594, 624
Fnu4HI GCNGC 5 cut(s) 251, 293, 620, 683, 828
FokI GGATG 3 cut(s) 386, 419, 452
Fsp4HI GCNGC 5 cut(s) 251, 293, 620, 683, 828
FspBI CTAG 3 cut(s) 507, 582, 722
GluI GCNGC 5 cut(s) 251, 293, 620, 683, 828
HapII CCGG 1 cut(s) 572
HgaI GACGC 3 cut(s) 719, 794, 833
Hin1I GRCGYC 1 cut(s) 825
Hin1II CATG 5 cut(s) 140, 185, 212, 257, 347
HinfI GANTC 3 cut(s) 40, 754, 936
HpaII CCGG 1 cut(s) 572
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 9 cut(s) 92, 388, 421, 454, 502, 535, 562, 577, 736
Hpy188I TCNGA 1 cut(s) 39
Hpy8I GTNNAC 9 cut(s) 92, 388, 421, 454, 502, 535, 562, 577, 736
Hpy99I CGWCG 1 cut(s) 713
HpyAV CCTTC 3 cut(s) 406, 439, 669
HpyCH4III ACNGT 2 cut(s) 89, 914
HpyCH4IV ACGT 4 cut(s) 300, 698, 738, 759
HpyCH4V TGCA 3 cut(s) 74, 421, 843
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 748, 785
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 4 cut(s) 300, 698, 738, 759
Hsp92I GRCGYC 1 cut(s) 825
Hsp92II CATG 5 cut(s) 140, 185, 212, 257, 347
LguI GCTCTTC 1 cut(s) 900
LmnI GCTCC 2 cut(s) 85, 867
MaeI CTAG 3 cut(s) 507, 582, 722
MaeII ACGT 4 cut(s) 300, 698, 738, 759
MaeIII GTNAC 1 cut(s) 604
MboII GAAGA 2 cut(s) 887, 931
MfeI CAATTG 4 cut(s) 381, 414, 447, 528
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 5 cut(s) 381, 414, 447, 480, 528
MseI TTAA 2 cut(s) 858, 867
MspCI CTTAAG 1 cut(s) 857
MspI CCGG 1 cut(s) 572
MunI CAATTG 4 cut(s) 381, 414, 447, 528
MwoI GCNNNNNNNGC 3 cut(s) 259, 748, 785
NlaIII CATG 5 cut(s) 140, 185, 212, 257, 347
NmuCI GTSAC 1 cut(s) 604
NspI RCATGY 4 cut(s) 185, 212, 257, 347
PciI ACATGT 3 cut(s) 181, 208, 343
PciSI GCTCTTC 1 cut(s) 900
PfeI GAWTC 3 cut(s) 40, 754, 936
PinAI ACCGGT 1 cut(s) 571
PkrI GCNGC 5 cut(s) 252, 294, 621, 684, 829
PmaCI CACGTG 2 cut(s) 301, 699
PmlI CACGTG 2 cut(s) 301, 699
Ppu21I YACGTR 2 cut(s) 301, 699
PpuMI RGGWCCY 1 cut(s) 901
PscI ACATGT 3 cut(s) 181, 208, 343
Psp5II RGGWCCY 1 cut(s) 901
PspCI CACGTG 2 cut(s) 301, 699
PspPI GGNCC 1 cut(s) 901
PspPPI RGGWCCY 1 cut(s) 901
RsaI GTAC 5 cut(s) 86, 363, 503, 563, 578
RsaNI GTAC 5 cut(s) 85, 362, 502, 562, 577
SapI GCTCTTC 1 cut(s) 900
SaqAI TTAA 2 cut(s) 858, 867
SatI GCNGC 5 cut(s) 251, 293, 620, 683, 828
Sau96I GGNCC 1 cut(s) 901
SduI GDGCHC 1 cut(s) 423
SgrAI CRCCGGYG 1 cut(s) 571
SinI GGWCC 1 cut(s) 901
SmlI CTYRAG 2 cut(s) 716, 857
SmoI CTYRAG 2 cut(s) 716, 857
Sse9I AATT 5 cut(s) 381, 414, 447, 480, 528
SspMI CTAG 3 cut(s) 507, 582, 722
TaaI ACNGT 2 cut(s) 89, 914
TaiI ACGT 4 cut(s) 303, 701, 741, 762
TaqI TCGA 2 cut(s) 708, 909
TasI AATT 5 cut(s) 381, 414, 447, 480, 528
TauI GCSGC 5 cut(s) 253, 295, 622, 685, 830
TfiI GAWTC 3 cut(s) 40, 754, 936
Tru1I TTAA 2 cut(s) 858, 867
Tru9I TTAA 2 cut(s) 858, 867
TscAI CASTG 2 cut(s) 291, 336
TseFI GTSAC 1 cut(s) 604
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 4 cut(s) 388, 421, 454, 939
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 2 cut(s) 291, 336
Vha464I CTTAAG 1 cut(s) 857
VneI GTGCAC 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 901
XceI RCATGY 4 cut(s) 185, 212, 257, 347
XspI CTAG 3 cut(s) 507, 582, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.