Rroxscaffold_2G00095120

36.4 kDa proline-rich

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
16437326 .. 16439079
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095120.1

Sequence Viewer

Length: 1044 bp
ATGGAATTTAGTGGCCGACACCGATTGCAAATACATGTGTCTATTCTAGGCTTTGGTGACACTCAGACTAGAGAGGAGGTAAGATTAATCGGTCTATTCGTCGGGGGAGAAATCCATAACCTAAAGTTGAAAAATCTTGAGCGCATTTTGTCCCCTCGCACACTTTCCTCACCCATTCCCCCCAAACACCCTCCTCATGTCAAACCACCATTTCACCCTAAACCACCCAAATACCCACCACAAGTGAAACCACCAGTAAAACCACCACATGTGAAGCCTCCCTACATTCCCAAACCGCCAGTAAAACCGCCGCATGTGAAGCCTCCCTACATTCCCAAACCGCCCGTACAACCACCACATGTGAAGCCTCCATACATTCCCAAACCACCAGTGAAGCCGCCACACGTGAAGCCTCCCTACATTCCCAAACCACCAGTGAAGCCACCACATGTGAAACCTCCCTATGTACCAACACCACAACCACCAATTGTGCACCCGCCCTTCATCCCAAAACCACCAATTGTCCACCCACCTTTCATCCCTAGACCACCAATTGTGAACCCACCAATTACTCCCAAGCCCCCCGTGTACCCTCCACCGGTGTACCCTAGCCCGCCACCTAAACCACCAATTGTGAACCCACCAATTACTCCCAAGCCCCCCGTGTACCCTAGCCCGCCACCGACACCTGTTGTGACCCCTAGCCCGCCGCCACCAGCAACAGAAACACCCTGTCCTCCTCCACCACCTTCAGTAGTGCCATACCCACCGCCGCCACCAAAAAACACGTGTCCCATCGACGCTCTCAAGCTAGGGGCTTGTGTGGACGTGCTTAGTGGGCTGATTCACATTGGGATAGGGGAAAGTGCTAAAGACGCTTGCTGTCCTGTGCTTCAAGGACTGCTGGACTTGGACGCTGCCATTTGCCTCTGCACCACCATCAGGCTTAAGCTCCTTAACATCAACATAATCATACCTCTAGCTCTTCAGGTCCTCATCGACTGTGGGAAGACACCACCCGATGGATTCAAGTGTCCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

347

Amino Acids

37.6

Weight (kDa)

9.75

Isoelectric Point (pI)

64.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 256 - 345 9.3e-06 Probable lipid transfer
Hydrophob_seed PF14547 263 - 346 1.6e-28 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 264 - 345 1e-11 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014897)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1022
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 2 cut(s) 735, 971
AcvI CACGTG 2 cut(s) 406, 789
AfaI GTAC 5 cut(s) 348, 468, 590, 605, 668
AfiI CCNNNNNNNGG 3 cut(s) 598, 942, 1022
AflII CTTAAG 1 cut(s) 947
AflIII ACRYGT 7 cut(s) 34, 268, 358, 403, 448, 786, 788
AgeI ACCGGT 1 cut(s) 598
AgsI TTSAA 3 cut(s) 130, 896, 1030
AjiI CACGTC 1 cut(s) 829
AluBI AGCT 3 cut(s) 811, 952, 983
AluI AGCT 3 cut(s) 811, 952, 983
Alw21I GWGCWC 1 cut(s) 495
Alw44I GTGCAC 1 cut(s) 491
AoxI GGCC 1 cut(s) 13
ApaLI GTGCAC 1 cut(s) 491
ApeKI GCWGC 1 cut(s) 917
ApoI RAATTY 1 cut(s) 5
AseI ATTAAT 1 cut(s) 86
AsiGI ACCGGT 1 cut(s) 598
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 991
AsuHPI GGTGA 3 cut(s) 68, 162, 206
AvaII GGWCC 1 cut(s) 991
BaeGI GKGCMC 1 cut(s) 495
BaeI ACNNNNGTAYC 2 cut(s) 587, 620
BarI GAAGNNNNNNTAC 8 cut(s) 266, 298, 311, 343, 356, 388, 401, 433
BbrPI CACGTG 2 cut(s) 406, 789
BbsI GAAGAC 1 cut(s) 1016
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 1 cut(s) 904
BccI CCATC 3 cut(s) 803, 947, 1016
BfaI CTAG 8 cut(s) 47, 69, 543, 609, 672, 702, 812, 980
BfrI CTTAAG 1 cut(s) 947
BisI GCNGC 5 cut(s) 311, 398, 710, 773, 918
BlsI GCNGC 5 cut(s) 312, 399, 711, 774, 919
Bme18I GGWCC 1 cut(s) 991
BmgBI CACGTC 1 cut(s) 829
BmgT120I GGNCC 1 cut(s) 991
BpiI GAAGAC 1 cut(s) 1016
BpuEI CTTGAG 2 cut(s) 158, 791
BsaAI YACGTR 2 cut(s) 406, 789
BsaWI WCCGGW 1 cut(s) 598
Bsc4I CCNNNNNNNGG 3 cut(s) 598, 942, 1022
Bse118I RCCGGY 1 cut(s) 598
Bse1I ACTGG 4 cut(s) 254, 299, 389, 434
BseGI GGATG 2 cut(s) 504, 537
BseLI CCNNNNNNNGG 3 cut(s) 598, 942, 1022
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 4 cut(s) 254, 299, 389, 434
BseRI GAGGAG 3 cut(s) 89, 183, 729
BseSI GKGCMC 1 cut(s) 495
BseXI GCAGC 1 cut(s) 904
BsgI GTGCAG 1 cut(s) 916
BshFI GGCC 1 cut(s) 15
BshTI ACCGGT 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 495
BsiSI CCGG 1 cut(s) 599
BslFI GGGAC 2 cut(s) 136, 777
BslI CCNNNNNNNGG 3 cut(s) 598, 942, 1022
BsmFI GGGAC 2 cut(s) 136, 777
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 495
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 990
BspTI CTTAAG 1 cut(s) 947
BsrFI RCCGGY 1 cut(s) 598
BsrI ACTGG 4 cut(s) 254, 299, 389, 434
BssAI RCCGGY 1 cut(s) 598
Bst4CI ACNGT 1 cut(s) 1004
Bst6I CTCTTC 1 cut(s) 990
BstAFI CTTAAG 1 cut(s) 947
BstBAI YACGTR 2 cut(s) 406, 789
BstC8I GCNNGC 4 cut(s) 614, 677, 707, 880
BstDEI CTNAG 2 cut(s) 63, 833
BstF5I GGATG 2 cut(s) 504, 537
BstHHI GCGC 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 319, 838, 875
BstNSI RCATGY 5 cut(s) 38, 272, 317, 362, 452
BstSLI GKGCMC 1 cut(s) 495
BstV1I GCAGC 1 cut(s) 904
BstV2I GAAGAC 1 cut(s) 1016
BsuRI GGCC 1 cut(s) 15
BtrI CACGTC 1 cut(s) 829
BtsCI GGATG 2 cut(s) 504, 537
BtsIMutI CAGTG 2 cut(s) 396, 441
Cac8I GCNNGC 4 cut(s) 614, 677, 707, 880
CfoI GCGC 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 598
Cfr13I GGNCC 1 cut(s) 991
CseI GACGC 3 cut(s) 809, 884, 923
Csp6I GTAC 5 cut(s) 347, 467, 589, 604, 667
CspAI ACCGGT 1 cut(s) 598
CviAII CATG 6 cut(s) 35, 197, 269, 314, 359, 449
CviQI GTAC 5 cut(s) 347, 467, 589, 604, 667
DdeI CTNAG 2 cut(s) 63, 833
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 990
EarI CTCTTC 1 cut(s) 990
Eco47I GGWCC 1 cut(s) 991
Eco57I CTGAAG 2 cut(s) 735, 971
Eco72I CACGTG 2 cut(s) 406, 789
EcoO109I RGGNCCY 1 cut(s) 991
FaeI CATG 6 cut(s) 38, 200, 272, 317, 362, 452
FaqI GGGAC 2 cut(s) 136, 777
FatI CATG 6 cut(s) 34, 196, 268, 313, 358, 448
FauI CCCGC 4 cut(s) 504, 621, 684, 714
Fnu4HI GCNGC 5 cut(s) 311, 398, 710, 773, 918
FokI GGATG 2 cut(s) 491, 524
Fsp4HI GCNGC 5 cut(s) 311, 398, 710, 773, 918
FspBI CTAG 8 cut(s) 47, 69, 543, 609, 672, 702, 812, 980
GlaI GCGC 1 cut(s) 143
GluI GCNGC 5 cut(s) 311, 398, 710, 773, 918
HaeIII GGCC 1 cut(s) 15
HapII CCGG 1 cut(s) 599
HgaI GACGC 3 cut(s) 809, 884, 923
HhaI GCGC 1 cut(s) 144
Hin1II CATG 6 cut(s) 38, 200, 272, 317, 362, 452
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 2 cut(s) 844, 1026
HpaII CCGG 1 cut(s) 599
HphI GGTGA 3 cut(s) 68, 162, 206
Hpy166II GTNNAC 8 cut(s) 493, 526, 559, 589, 604, 637, 667, 826
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 8 cut(s) 493, 526, 559, 589, 604, 637, 667, 826
Hpy99I CGWCG 2 cut(s) 104, 803
HpyAV CCTTC 2 cut(s) 511, 759
HpyCH4III ACNGT 1 cut(s) 1004
HpyCH4IV ACGT 3 cut(s) 405, 788, 828
HpyCH4V TGCA 3 cut(s) 28, 493, 933
HpyF10VI GCNNNNNNNGC 3 cut(s) 319, 838, 875
HpyF3I CTNAG 2 cut(s) 63, 833
HpySE526I ACGT 3 cut(s) 405, 788, 828
Hsp92II CATG 6 cut(s) 38, 200, 272, 317, 362, 452
HspAI GCGC 1 cut(s) 142
LguI GCTCTTC 1 cut(s) 990
LmnI GCTCC 1 cut(s) 957
Lsp1109I GCAGC 1 cut(s) 904
MaeI CTAG 8 cut(s) 47, 69, 543, 609, 672, 702, 812, 980
MaeII ACGT 3 cut(s) 405, 788, 828
MaeIII GTNAC 2 cut(s) 56, 694
MboII GAAGA 2 cut(s) 977, 1021
MfeI CAATTG 4 cut(s) 486, 519, 552, 630
MhlI GDGCHC 1 cut(s) 495
MluCI AATT 7 cut(s) 5, 486, 519, 552, 567, 630, 645
MseI TTAA 3 cut(s) 86, 948, 957
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 1 cut(s) 599
MunI CAATTG 4 cut(s) 486, 519, 552, 630
MwoI GCNNNNNNNGC 3 cut(s) 319, 838, 875
NlaIII CATG 6 cut(s) 38, 200, 272, 317, 362, 452
NmuCI GTSAC 2 cut(s) 56, 694
NspI RCATGY 5 cut(s) 38, 272, 317, 362, 452
PciI ACATGT 4 cut(s) 34, 268, 358, 448
PciSI GCTCTTC 1 cut(s) 990
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 2 cut(s) 844, 1026
PflMI CCANNNNNTGG 1 cut(s) 1022
PinAI ACCGGT 1 cut(s) 598
PkrI GCNGC 5 cut(s) 312, 399, 711, 774, 919
PmaCI CACGTG 2 cut(s) 406, 789
PmlI CACGTG 2 cut(s) 406, 789
Ppu21I YACGTR 2 cut(s) 406, 789
PpuMI RGGWCCY 1 cut(s) 991
PscI ACATGT 4 cut(s) 34, 268, 358, 448
PshBI ATTAAT 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 991
PspCI CACGTG 2 cut(s) 406, 789
PspPI GGNCC 1 cut(s) 991
PspPPI RGGWCCY 1 cut(s) 991
RsaI GTAC 5 cut(s) 348, 468, 590, 605, 668
RsaNI GTAC 5 cut(s) 347, 467, 589, 604, 667
SapI GCTCTTC 1 cut(s) 990
SaqAI TTAA 3 cut(s) 86, 948, 957
SatI GCNGC 5 cut(s) 311, 398, 710, 773, 918
Sau96I GGNCC 1 cut(s) 991
SduI GDGCHC 1 cut(s) 495
SgrAI CRCCGGYG 1 cut(s) 598
SinI GGWCC 1 cut(s) 991
SmlI CTYRAG 3 cut(s) 137, 806, 947
SmoI CTYRAG 3 cut(s) 137, 806, 947
Sse9I AATT 7 cut(s) 5, 486, 519, 552, 567, 630, 645
SspMI CTAG 8 cut(s) 47, 69, 543, 609, 672, 702, 812, 980
TaaI ACNGT 1 cut(s) 1004
TaiI ACGT 3 cut(s) 408, 791, 831
TaqI TCGA 2 cut(s) 798, 999
TaqII GACCGA 1 cut(s) 80
TasI AATT 7 cut(s) 5, 486, 519, 552, 567, 630, 645
TauI GCSGC 4 cut(s) 313, 400, 712, 775
TfiI GAWTC 2 cut(s) 844, 1026
Tru1I TTAA 3 cut(s) 86, 948, 957
Tru9I TTAA 3 cut(s) 86, 948, 957
TscAI CASTG 2 cut(s) 396, 441
TseFI GTSAC 2 cut(s) 56, 694
TseI GCWGC 1 cut(s) 917
Tsp45I GTSAC 2 cut(s) 56, 694
TspDTI ATGAA 3 cut(s) 493, 526, 1029
TspRI CASTG 2 cut(s) 396, 441
Van91I CCANNNNNTGG 1 cut(s) 1022
Vha464I CTTAAG 1 cut(s) 947
VneI GTGCAC 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 991
VspI ATTAAT 1 cut(s) 86
XapI RAATTY 1 cut(s) 5
XceI RCATGY 5 cut(s) 38, 272, 317, 362, 452
XspI CTAG 8 cut(s) 47, 69, 543, 609, 672, 702, 812, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.