Rh2AG500300

36.4 kDa proline-rich

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
72329618 .. 72331161
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG500300.1

Sequence Viewer

Length: 1014 bp
ATGGGGACGAACTATGTTCTGGCTTTGCTCTTGGTTCTGATTCTCAACTTGGGAAGTTTCCTCACTTCTCTTGCAAACGCTCCGTACTGTCCACCACCGACATACCCTCCTAAGTTCCCCCCCAAACACCCTCCTCATGTCAAACCACCATTTCACCCTATACCACCCAAACACCCACCACATGTGAAACCACCAGTAAAACCACCACATGTGAAGCCTCCCTACATTCCCAAACCGCCCGTAAAACCGCCGCATGTGAAGCCTCCCTACATTCCCAAACCGCCCTTAAAACCACCACATGTGAAGCCTCCATACATTCCCAAACCACCAGTGAAGCCGCCACACGTGAAGCCTCCCTACATTCCCAAACCACCAGTGAAGCCACCACATGTGAAACCTCCCTATGTACCAACACCACAACCACCAATTGTCCACCCTCCCTTCATCCCAAAACCACCAATTGTGCACCCTCCCTTCATCCCAAAACCACCAATTGTCCACCCACCTTTCATCCCTAAACCACCAATTACTCCCAAGCCCCCCGTGTACCCTCCACCGGTGTACCCTAGCCCGCCACCTAAACCACCAATTGTGAACCCACCAATTCCCAAGCCCCCCGTGTACCCTCCACCGGTATACCCTAGCCCGCCACCGACACCTGTTGTGACCCCTACCCCGCCGCCACCAGCAACAGAAACACCCTGTCCTCCTCCACCACCTTCAGTAGTGCCATACCCACCGCCGCCACCAAAAAACACGTGTCCCATCGACGCTCTCAAGCTAGGGGCTTGTGTGGACGTGCTTGGTGGGCTGATTCACATTGGGATAGGGGAAAGTGCTAAAGACGCTTGCTGTCCTGTGCTTCAAGGACTGCTGGACTTGGACGCCGCCATTTGCCTCTGCACCACCATCAGGCTTAAGCTCCTTAACATCAACATTATCATACCCCTTGCTCTTCAGGTCCTCATCGACTGTGGGAAGACACCACCCGATGGATTCAAGTGTCCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

337

Amino Acids

36.21

Weight (kDa)

9.66

Isoelectric Point (pI)

60.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 253 - 336 1.2e-28 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 254 - 335 7.5e-12 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014897)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 992
AccI GTMKAC 1 cut(s) 636
AcuI CTGAAG 2 cut(s) 705, 941
AcvI CACGTG 2 cut(s) 346, 759
AcyI GRCGYC 1 cut(s) 885
AfaI GTAC 5 cut(s) 86, 408, 548, 563, 623
AfiI CCNNNNNNNGG 4 cut(s) 556, 631, 912, 992
AflII CTTAAG 1 cut(s) 917
AflIII ACRYGT 7 cut(s) 181, 208, 298, 343, 388, 756, 758
AgeI ACCGGT 2 cut(s) 556, 631
AgsI TTSAA 2 cut(s) 866, 1000
AjiI CACGTC 1 cut(s) 799
AluBI AGCT 2 cut(s) 781, 922
AluI AGCT 2 cut(s) 781, 922
Alw21I GWGCWC 1 cut(s) 468
Alw44I GTGCAC 1 cut(s) 464
ApaLI GTGCAC 1 cut(s) 464
AsiGI ACCGGT 2 cut(s) 556, 631
AspS9I GGNCC 1 cut(s) 961
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 961
BaeGI GKGCMC 1 cut(s) 468
BaeI ACNNNNGTAYC 2 cut(s) 545, 578
BarI GAAGNNNNNNTAC 8 cut(s) 206, 238, 251, 283, 296, 328, 341, 373
BbrPI CACGTG 2 cut(s) 346, 759
BbsI GAAGAC 1 cut(s) 986
Bbv12I GWGCWC 1 cut(s) 468
BccI CCATC 3 cut(s) 773, 917, 986
BfaI CTAG 3 cut(s) 567, 642, 782
BfrI CTTAAG 1 cut(s) 917
BisI GCNGC 5 cut(s) 251, 338, 680, 743, 888
BlsI GCNGC 5 cut(s) 252, 339, 681, 744, 889
Bme18I GGWCC 1 cut(s) 961
BmgBI CACGTC 1 cut(s) 799
BmgT120I GGNCC 1 cut(s) 961
BpiI GAAGAC 1 cut(s) 986
BpuEI CTTGAG 1 cut(s) 761
BsaAI YACGTR 2 cut(s) 346, 759
BsaHI GRCGYC 1 cut(s) 885
BsaWI WCCGGW 2 cut(s) 556, 631
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 4 cut(s) 556, 631, 912, 992
Bse118I RCCGGY 2 cut(s) 556, 631
Bse1I ACTGG 3 cut(s) 194, 329, 374
BseGI GGATG 3 cut(s) 444, 477, 510
BseLI CCNNNNNNNGG 4 cut(s) 556, 631, 912, 992
BseNI ACTGG 3 cut(s) 194, 329, 374
BseRI GAGGAG 2 cut(s) 123, 699
BseSI GKGCMC 1 cut(s) 468
BsgI GTGCAG 1 cut(s) 886
BshTI ACCGGT 2 cut(s) 556, 631
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 2 cut(s) 557, 632
BslFI GGGAC 2 cut(s) 19, 747
BslI CCNNNNNNNGG 4 cut(s) 556, 631, 912, 992
BsmFI GGGAC 2 cut(s) 19, 747
Bsp1286I GDGCHC 1 cut(s) 468
BspQI GCTCTTC 1 cut(s) 960
BspTI CTTAAG 1 cut(s) 917
BsrFI RCCGGY 2 cut(s) 556, 631
BsrI ACTGG 3 cut(s) 194, 329, 374
BssAI RCCGGY 2 cut(s) 556, 631
BssNAI GTATAC 1 cut(s) 637
BssNI GRCGYC 1 cut(s) 885
Bst1107I GTATAC 1 cut(s) 637
Bst4CI ACNGT 2 cut(s) 89, 974
Bst6I CTCTTC 1 cut(s) 960
BstACI GRCGYC 1 cut(s) 885
BstAFI CTTAAG 1 cut(s) 917
BstBAI YACGTR 2 cut(s) 346, 759
BstC8I GCNNGC 3 cut(s) 572, 647, 850
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 3 cut(s) 444, 477, 510
BstMWI GCNNNNNNNGC 3 cut(s) 259, 808, 845
BstNSI RCATGY 5 cut(s) 185, 212, 257, 302, 392
BstSLI GKGCMC 1 cut(s) 468
BstV2I GAAGAC 1 cut(s) 986
BstZ17I GTATAC 1 cut(s) 637
BtrI CACGTC 1 cut(s) 799
BtsCI GGATG 3 cut(s) 444, 477, 510
BtsIMutI CAGTG 2 cut(s) 336, 381
Cac8I GCNNGC 3 cut(s) 572, 647, 850
Cfr10I RCCGGY 2 cut(s) 556, 631
Cfr13I GGNCC 1 cut(s) 961
CseI GACGC 3 cut(s) 779, 854, 893
Csp6I GTAC 5 cut(s) 85, 407, 547, 562, 622
CspAI ACCGGT 2 cut(s) 556, 631
CviAII CATG 6 cut(s) 137, 182, 209, 254, 299, 389
CviQI GTAC 5 cut(s) 85, 407, 547, 562, 622
DdeI CTNAG 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 960
EarI CTCTTC 1 cut(s) 960
Eco47I GGWCC 1 cut(s) 961
Eco57I CTGAAG 2 cut(s) 705, 941
Eco72I CACGTG 2 cut(s) 346, 759
EcoO109I RGGNCCY 1 cut(s) 961
FaeI CATG 6 cut(s) 140, 185, 212, 257, 302, 392
FaqI GGGAC 2 cut(s) 19, 747
FatI CATG 6 cut(s) 136, 181, 208, 253, 298, 388
FauI CCCGC 3 cut(s) 579, 654, 684
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 5 cut(s) 251, 338, 680, 743, 888
FokI GGATG 3 cut(s) 431, 464, 497
Fsp4HI GCNGC 5 cut(s) 251, 338, 680, 743, 888
FspBI CTAG 3 cut(s) 567, 642, 782
GluI GCNGC 5 cut(s) 251, 338, 680, 743, 888
HapII CCGG 2 cut(s) 557, 632
HgaI GACGC 3 cut(s) 779, 854, 893
Hin1I GRCGYC 1 cut(s) 885
Hin1II CATG 6 cut(s) 140, 185, 212, 257, 302, 392
HinfI GANTC 3 cut(s) 40, 814, 996
HpaII CCGG 2 cut(s) 557, 632
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 39
Hpy99I CGWCG 1 cut(s) 773
HpyAV CCTTC 3 cut(s) 451, 484, 729
HpyCH4III ACNGT 2 cut(s) 89, 974
HpyCH4IV ACGT 3 cut(s) 345, 758, 798
HpyCH4V TGCA 3 cut(s) 74, 466, 903
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 808, 845
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 3 cut(s) 345, 758, 798
Hsp92I GRCGYC 1 cut(s) 885
Hsp92II CATG 6 cut(s) 140, 185, 212, 257, 302, 392
LguI GCTCTTC 1 cut(s) 960
LmnI GCTCC 2 cut(s) 85, 927
MaeI CTAG 3 cut(s) 567, 642, 782
MaeII ACGT 3 cut(s) 345, 758, 798
MaeIII GTNAC 1 cut(s) 664
MboII GAAGA 2 cut(s) 947, 991
MfeI CAATTG 4 cut(s) 426, 459, 492, 588
MhlI GDGCHC 1 cut(s) 468
MluCI AATT 6 cut(s) 426, 459, 492, 525, 588, 603
MseI TTAA 3 cut(s) 287, 918, 927
MspCI CTTAAG 1 cut(s) 917
MspI CCGG 2 cut(s) 557, 632
MunI CAATTG 4 cut(s) 426, 459, 492, 588
MwoI GCNNNNNNNGC 3 cut(s) 259, 808, 845
NlaIII CATG 6 cut(s) 140, 185, 212, 257, 302, 392
NmuCI GTSAC 1 cut(s) 664
NspI RCATGY 5 cut(s) 185, 212, 257, 302, 392
PciI ACATGT 4 cut(s) 181, 208, 298, 388
PciSI GCTCTTC 1 cut(s) 960
PfeI GAWTC 3 cut(s) 40, 814, 996
PflMI CCANNNNNTGG 1 cut(s) 992
PinAI ACCGGT 2 cut(s) 556, 631
PkrI GCNGC 5 cut(s) 252, 339, 681, 744, 889
PmaCI CACGTG 2 cut(s) 346, 759
PmlI CACGTG 2 cut(s) 346, 759
Ppu21I YACGTR 2 cut(s) 346, 759
PpuMI RGGWCCY 1 cut(s) 961
PscI ACATGT 4 cut(s) 181, 208, 298, 388
Psp5II RGGWCCY 1 cut(s) 961
PspCI CACGTG 2 cut(s) 346, 759
PspPI GGNCC 1 cut(s) 961
PspPPI RGGWCCY 1 cut(s) 961
RsaI GTAC 5 cut(s) 86, 408, 548, 563, 623
RsaNI GTAC 5 cut(s) 85, 407, 547, 562, 622
SapI GCTCTTC 1 cut(s) 960
SaqAI TTAA 3 cut(s) 287, 918, 927
SatI GCNGC 5 cut(s) 251, 338, 680, 743, 888
Sau96I GGNCC 1 cut(s) 961
SduI GDGCHC 1 cut(s) 468
SgrAI CRCCGGYG 1 cut(s) 556
SinI GGWCC 1 cut(s) 961
SmlI CTYRAG 2 cut(s) 776, 917
SmoI CTYRAG 2 cut(s) 776, 917
Sse9I AATT 6 cut(s) 426, 459, 492, 525, 588, 603
SspMI CTAG 3 cut(s) 567, 642, 782
TaaI ACNGT 2 cut(s) 89, 974
TaiI ACGT 3 cut(s) 348, 761, 801
TaqI TCGA 2 cut(s) 768, 969
TasI AATT 6 cut(s) 426, 459, 492, 525, 588, 603
TauI GCSGC 5 cut(s) 253, 340, 682, 745, 890
TfiI GAWTC 3 cut(s) 40, 814, 996
Tru1I TTAA 3 cut(s) 287, 918, 927
Tru9I TTAA 3 cut(s) 287, 918, 927
TscAI CASTG 2 cut(s) 336, 381
TseFI GTSAC 1 cut(s) 664
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 4 cut(s) 433, 466, 499, 999
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 2 cut(s) 336, 381
Van91I CCANNNNNTGG 1 cut(s) 992
Vha464I CTTAAG 1 cut(s) 917
VneI GTGCAC 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 961
XceI RCATGY 5 cut(s) 185, 212, 257, 302, 392
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 3 cut(s) 567, 642, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.