Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011584

Physical Location & Seq

Genomic Coordinates Reverse (-)

31396779 .. 31398550

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g39780.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCAATGGAGAAATGCAGCTCGGAGGAGCTGGAACTCGGCCTTCCTCCGACGACAATCGATTCTATATCACAGATGATTTACCGGAAAGCTATTATGGATGAGCAGACCAGACAGGAACCTATCACCATTTTTTACGATGGCCGGGTTTATGTTTTCGACATCATAGAACTTCAGGTTAGAGCCATGATCTTGTTTGCAACTAGAGAAATGGAAGGAGGGATGACATCAAGGTCCTCCAAGGAAGCAATATCACTTGCATTGCAATCTCAAATACTCGGTCCTCCATGCGGATCCGTGAAGAAATCTCTCCACACATTTCTGCAAAAAAGAAAGAACGAAGCTTCTGATCCCTACAGCCACAATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

124

Amino Acids

13.92

Weight (kDa)

5.69

Isoelectric Point (pI)

68.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39780 FvH4_6g39780
malus_domestica	MD09G1136800.v1.1 MD17G1127000.v1.1
prunus_persica	Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1
pyrus_communis	pycom17g11930
rosa_chinensis	RchiOBHm_Chr2g0153891
rosa_laevigata	RLG00000020737
rosa_multiflora	Rmu_sc0003887.1_g000009 Rmu_sc0016331.1_g000001 Rmu_sc0023546.1_g000002
rosa_roxburghii	Rroxscaffold_2G00094670
rosa_rugosa	Rorug02G0443000
rosa_samantha	Rh2AG506800 Rh2BG516800 Rh2CG492500 Rh2DG528900
rosa_wichuraiana	Rw2G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	232
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	3 cut(s)	288, 301, 344
AcoI	YGGCCR	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	290
AluBI	AGCT	4 cut(s)	21, 31, 92, 344
AluI	AGCT	4 cut(s)	21, 31, 92, 344
AlwI	GGATC	3 cut(s)	288, 301, 344
AoxI	GGCC	2 cut(s)	40, 142
ApeKI	GCWGC	1 cut(s)	18
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
AspS9I	GGNCC	2 cut(s)	234, 281
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	2 cut(s)	234, 281
BamHI	GGATCC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	146
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	2 cut(s)	234, 281
BmgT120I	GGNCC	2 cut(s)	234, 281
BmiI	GGNNCC	2 cut(s)	120, 295
BmrFI	CCNGG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse3DI	GCAATG	2 cut(s)	12, 260
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	106, 228
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	2 cut(s)	12, 260
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	30
BshFI	GGCC	2 cut(s)	42, 144
BshVI	ATCGAT	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	85, 145
BslI	CCNNNNNNNGG	1 cut(s)	290
BsnI	GGCC	2 cut(s)	42, 144
Bsp143I	GATC	3 cut(s)	189, 293, 349
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	2 cut(s)	42, 144
BspDI	ATCGAT	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	120, 295
BspPI	GGATC	3 cut(s)	288, 301, 344
BsrDI	GCAATG	2 cut(s)	12, 260
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	189, 293, 349
BssT1I	CCWWGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	106, 228
BstKTI	GATC	3 cut(s)	192, 296, 352
BstMBI	GATC	3 cut(s)	189, 293, 349
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	42, 144
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	106, 228
Cfr13I	GGNCC	2 cut(s)	234, 281
ClaI	ATCGAT	1 cut(s)	60
CviAII	CATG	2 cut(s)	187, 288
CviJI	RGCY	8 cut(s)	21, 31, 42, 92, 144, 185, 344, 360
CviKI_1	RGCY	8 cut(s)	21, 31, 42, 92, 144, 185, 344, 360
DpnI	GATC	3 cut(s)	191, 295, 351
DpnII	GATC	3 cut(s)	189, 293, 349
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	234, 281
Eco57I	CTGAAG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	190, 291
FaiI	YATR	8 cut(s)	68, 98, 153, 167, 188, 289, 368, 370
FatI	CATG	2 cut(s)	186, 287
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	2 cut(s)	113, 235
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	42, 144
HapII	CCGG	2 cut(s)	85, 145
Hin1II	CATG	2 cut(s)	190, 291
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	2 cut(s)	85, 145
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	3 cut(s)	25, 51, 349
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	53, 209
HpyCH4V	TGCA	5 cut(s)	18, 200, 260, 265, 325
Hsp92II	CATG	2 cut(s)	190, 291
Kzo9I	GATC	3 cut(s)	189, 293, 349
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	17, 98, 101, 124, 158, 161
Lsp1109I	GCAGC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	204
MalI	GATC	3 cut(s)	191, 295, 351
MboI	GATC	3 cut(s)	189, 293, 349
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	5 cut(s)	19, 57, 212, 247, 294
MspI	CCGG	2 cut(s)	85, 145
MspR9I	CCNGG	1 cut(s)	146
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	3 cut(s)	189, 293, 349
NlaIII	CATG	2 cut(s)	190, 291
NlaIV	GGNNCC	2 cut(s)	120, 295
NmeAIII	GCCGAG	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	120, 295
PspPI	GGNCC	2 cut(s)	234, 281
PspPPI	RGGWCCY	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	293
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	3 cut(s)	189, 293, 349
Sau96I	GGNCC	2 cut(s)	234, 281
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	7 cut(s)	23, 33, 94, 124, 180, 236, 346
SfcI	CTRYAG	1 cut(s)	355
SinI	GGWCC	2 cut(s)	234, 281
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	240
TaqI	TCGA	2 cut(s)	60, 159
TaqII	GACCGA	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	234, 281
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.