Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003887.1

Orthogroup ID

OG0011584

Physical Location & Seq

Genomic Coordinates Forward (+)

32508 .. 33731

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003887.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggagaaatgcagctcgaaggagttggacctcggccttcctccgatgacggtcgattctttatcacagatgatttaccggaaagctctgatggatgatccgacgagccaggaaccgatcaccattttttatgatgggcgggtttatgttttcgatatcatggaacttcaggttagagccataatcttgtttgcaactagagaaatggaaggagggatgacatcaaggtcctccaaagaaacagtatcacttgcattgcaatctcaaatacttgttcctccatgtggatccgtgaagaaatctctccaaacatttctgcaaaacagaaagaacgaagcttctgatccgtacagccacaattcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

121

Amino Acids

13.61

Weight (kDa)

5.36

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39780 FvH4_6g39780
malus_domestica	MD09G1136800.v1.1 MD17G1127000.v1.1
prunus_persica	Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1
pyrus_communis	pycom17g11930
rosa_chinensis	RchiOBHm_Chr2g0153891
rosa_laevigata	RLG00000020737
rosa_multiflora	Rmu_sc0003887.1_g000009 Rmu_sc0016331.1_g000001 Rmu_sc0023546.1_g000002
rosa_roxburghii	Rroxscaffold_2G00094670
rosa_rugosa	Rorug02G0443000
rosa_samantha	Rh2AG506800 Rh2BG516800 Rh2CG492500 Rh2DG528900
rosa_wichuraiana	Rw2G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	226
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	4 cut(s)	92, 282, 295, 338
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	15, 86, 338
AluI	AGCT	3 cut(s)	15, 86, 338
AlwI	GGATC	4 cut(s)	92, 282, 295, 338
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	28, 228
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	28, 228
BamHI	GGATCC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	2 cut(s)	85, 128
BciT130I	CCWGG	1 cut(s)	110
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	2 cut(s)	28, 228
BmgT120I	GGNCC	2 cut(s)	28, 228
BmiI	GGNNCC	2 cut(s)	114, 289
BmrFI	CCNGG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	100, 222
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	284
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	4 cut(s)	97, 117, 287, 343
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	114, 289
BspPI	GGATC	4 cut(s)	92, 282, 295, 338
BsrDI	GCAATG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	4 cut(s)	97, 117, 287, 343
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	52, 244
BstF5I	GGATG	2 cut(s)	100, 222
BstKTI	GATC	4 cut(s)	100, 120, 290, 346
BstMBI	GATC	4 cut(s)	97, 117, 287, 343
BstMCI	CGRYCG	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	100, 222
Cfr13I	GGNCC	2 cut(s)	28, 228
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	2 cut(s)	160, 282
CviJI	RGCY	7 cut(s)	15, 36, 86, 108, 179, 338, 354
CviKI_1	RGCY	7 cut(s)	15, 36, 86, 108, 179, 338, 354
CviQI	GTAC	1 cut(s)	349
DpnI	GATC	4 cut(s)	99, 119, 289, 345
DpnII	GATC	4 cut(s)	97, 117, 287, 343
DrdI	GACNNNNNNGTC	1 cut(s)	226
DseDI	GACNNNNNNGTC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	28, 228
Eco57I	CTGAAG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	157
FaeI	CATG	2 cut(s)	163, 285
FaiI	YATR	6 cut(s)	132, 147, 161, 182, 283, 364
FatI	CATG	2 cut(s)	159, 281
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	2 cut(s)	107, 229
Fsp4HI	GCNGC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	2 cut(s)	163, 285
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	4 cut(s)	45, 90, 102, 343
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	3 cut(s)	13, 47, 203
HpyCH4III	ACNGT	2 cut(s)	52, 244
HpyCH4V	TGCA	5 cut(s)	12, 194, 254, 259, 319
Hsp92II	CATG	2 cut(s)	163, 285
Kzo9I	GATC	4 cut(s)	97, 117, 287, 343
LpnPI	CCDG	4 cut(s)	92, 95, 122, 155
Lsp1109I	GCAGC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	198
MalI	GATC	4 cut(s)	99, 119, 289, 345
MboI	GATC	4 cut(s)	97, 117, 287, 343
MboII	GAAGA	1 cut(s)	307
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	1 cut(s)	358
MmeI	TCCRAC	2 cut(s)	6, 125
MnlI	CCTC	5 cut(s)	41, 51, 206, 241, 288
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
NdeII	GATC	4 cut(s)	97, 117, 287, 343
NlaIII	CATG	2 cut(s)	163, 285
NlaIV	GGNNCC	2 cut(s)	114, 289
NmeAIII	GCCGAG	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	114, 289
PspPI	GGNCC	2 cut(s)	28, 228
PspPPI	RGGWCCY	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	4 cut(s)	97, 117, 287, 343
Sau96I	GGNCC	2 cut(s)	28, 228
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	6 cut(s)	17, 33, 88, 174, 230, 340
SinI	GGWCC	2 cut(s)	28, 228
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	52, 244
TaqI	TCGA	3 cut(s)	17, 54, 153
TasI	AATT	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	12
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	2 cut(s)	280, 336
VpaK11BI	GGWCC	2 cut(s)	28, 228
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.