Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011584

Physical Location & Seq

Genomic Coordinates Reverse (-)

68096144 .. 68097409

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020737

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCAATGGAGAAATGCAGCTCGAAGGAGTTGGACCTCGGCCTTCCTCCGATGACAGTCGATTCTTTATCACAGATGATTTACCGGAAAGCTCTGATGGATAAGCCGACTAGCCAGGAACTGATCACCATTTTTTATGATGGGCGGGTTTACGTTTTCGATATCATGGAACTTCAGGTTAGAGCCATAATCTTGTTTGCAACTAGAGAAATGGAAGGAGGGATGACATCAAGGTCCTCCAAGGAAGCAGTATCACTTGCACTGCAATCTCAACTACTTGTGCCCCCATGTGGAGCCGTGAAGAAATCTCTCCAAACATTTCTGCAAAATAGAAAGAACGAAGCTTCTGATCCGTACAGCCACAATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

124

Amino Acids

13.8

Weight (kDa)

6.57

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	42 - 67	3.9e-09	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39780 FvH4_6g39780
malus_domestica	MD09G1136800.v1.1 MD17G1127000.v1.1
prunus_persica	Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1
pyrus_communis	pycom17g11930
rosa_chinensis	RchiOBHm_Chr2g0153891
rosa_laevigata	RLG00000020737
rosa_multiflora	Rmu_sc0003887.1_g000009 Rmu_sc0016331.1_g000001 Rmu_sc0023546.1_g000002
rosa_roxburghii	Rroxscaffold_2G00094670
rosa_rugosa	Rorug02G0443000
rosa_samantha	Rh2AG506800 Rh2BG516800 Rh2CG492500 Rh2DG528900
rosa_wichuraiana	Rw2G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	232
AciI	CCGC	1 cut(s)	145
AclWI	GGATC	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	3 cut(s)	21, 92, 344
AluI	AGCT	3 cut(s)	21, 92, 344
AlwI	GGATC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	121
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	34, 234
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	2 cut(s)	34, 234
BaeGI	GKGCMC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	2 cut(s)	91, 134
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	116
BclI	TGATCA	1 cut(s)	123
BfaI	CTAG	2 cut(s)	111, 204
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	34, 234
BmgT120I	GGNCC	2 cut(s)	34, 234
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	37, 240
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	37, 240
BseGI	GGATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	30
BshFI	GGCC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	290
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	123, 349
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	37, 240
BssMI	GATC	2 cut(s)	123, 349
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	228
BstKTI	GATC	2 cut(s)	126, 352
BstMBI	GATC	2 cut(s)	123, 349
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	228
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	260
CaiI	CAGNNNCTG	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	34, 234
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	166, 288
CviJI	RGCY	9 cut(s)	21, 42, 92, 106, 114, 185, 296, 344, 360
CviKI_1	RGCY	9 cut(s)	21, 42, 92, 106, 114, 185, 296, 344, 360
CviQI	GTAC	1 cut(s)	355
DpnI	GATC	2 cut(s)	125, 351
DpnII	GATC	2 cut(s)	123, 349
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	34, 234
Eco57I	CTGAAG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	169, 291
FaiI	YATR	4 cut(s)	138, 167, 188, 289
FatI	CATG	2 cut(s)	165, 287
FauI	CCCGC	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	2 cut(s)	111, 204
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	85
Hin1II	CATG	2 cut(s)	169, 291
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	51, 96, 349
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	3 cut(s)	19, 53, 209
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	5 cut(s)	18, 200, 260, 265, 325
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	169, 291
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	123, 349
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	4 cut(s)	98, 101, 128, 161
Lsp1109I	GCAGC	1 cut(s)	30
MaeI	CTAG	2 cut(s)	111, 204
MaeII	ACGT	1 cut(s)	153
MalI	GATC	2 cut(s)	125, 351
MboI	GATC	2 cut(s)	123, 349
MboII	GAAGA	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	4 cut(s)	47, 57, 212, 247
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
NdeII	GATC	2 cut(s)	123, 349
NlaIII	CATG	2 cut(s)	169, 291
NlaIV	GGNNCC	1 cut(s)	295
NmeAIII	GCCGAG	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	2 cut(s)	34, 234
PspPPI	RGGWCCY	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	2 cut(s)	123, 349
Sau96I	GGNCC	2 cut(s)	34, 234
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	23, 39, 94, 156, 180, 236, 346
SinI	GGWCC	2 cut(s)	34, 234
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	2 cut(s)	111, 204
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	3 cut(s)	23, 60, 159
TasI	AATT	1 cut(s)	364
TfiI	GAWTC	1 cut(s)	62
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	2 cut(s)	34, 234
XspI	CTAG	2 cut(s)	111, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.