Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011584

Physical Location & Seq

Genomic Coordinates Forward (+)

10608285 .. 10608967

Gene Structure 683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1136800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGTTTTGGATGAGTCAACTCGGGGCGAACCACAGATTACCATTTTCTACAATGGACAAGTTTTTGTCTGCGACGTGACAGAACTTCAGGCTAGGGCTATTATTTTGTTGGCAACTAGGGAAATGCGAGGAGAAGGGACATCATCGAGGTGGTCCAGCGCAGTATTGCTTGCATTGCGGTCTAAAATTTACGGGCCTCCAGGTGTGTCCATGAAGAGGTCTCTTCGAAGCTTCCTCCAAAAGAGAAAGCAAAGAAGTCAAGCAGCTTCTCCATACAACTCCACCAACAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

99

Amino Acids

10.99

Weight (kDa)

10.35

Isoelectric Point (pI)

70.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	11 - 38	7.9e-13	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39780 FvH4_6g39780
malus_domestica	MD09G1136800.v1.1 MD17G1127000.v1.1
prunus_persica	Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1
pyrus_communis	pycom17g11930
rosa_chinensis	RchiOBHm_Chr2g0153891
rosa_laevigata	RLG00000020737
rosa_multiflora	Rmu_sc0003887.1_g000009 Rmu_sc0016331.1_g000001 Rmu_sc0023546.1_g000002
rosa_roxburghii	Rroxscaffold_2G00094670
rosa_rugosa	Rorug02G0443000
rosa_samantha	Rh2AG506800 Rh2BG516800 Rh2CG492500 Rh2DG528900
rosa_wichuraiana	Rw2G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	216
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	2 cut(s)	231, 266
AluI	AGCT	2 cut(s)	231, 266
Alw26I	GTCTC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	153, 194
AsuII	TTCGAA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	93, 117
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	21
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	153, 194
BmrFI	CCNGG	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	21
Bsp119I	TTCGAA	1 cut(s)	226
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	196
BspT104I	TTCGAA	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	2 cut(s)	209, 228
BstBI	TTCGAA	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	196
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	153, 194
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	5 cut(s)	92, 98, 196, 231, 266
CviKI_1	RGCY	5 cut(s)	92, 98, 196, 231, 266
Eam1104I	CTCTTC	2 cut(s)	209, 228
EarI	CTCTTC	2 cut(s)	209, 228
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	212, 274
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	93, 117
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	18
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	159
LpnPI	CCDG	4 cut(s)	74, 169, 186, 213
Lsp1109I	GCAGC	1 cut(s)	275
MaeI	CTAG	2 cut(s)	93, 117
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	215, 226
MluCI	AATT	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	5 cut(s)	122, 141, 207, 210, 245
MslI	CAYNNNNRTG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	153, 194
RseI	CAYNNNNRTG	1 cut(s)	148
SatI	GCNGC	1 cut(s)	264
Sau96I	GGNCC	2 cut(s)	153, 194
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	6 cut(s)	78, 152, 205, 221, 233, 268
SfuI	TTCGAA	1 cut(s)	226
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	148
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	2 cut(s)	93, 117
StyD4I	CCNGG	1 cut(s)	199
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	146, 226
TasI	AATT	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	1 cut(s)	186
XspI	CTAG	2 cut(s)	93, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.