Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011584

Physical Location & Seq

Genomic Coordinates Reverse (-)

75423079 .. 75424334

Gene Structure 1256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG528900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCAATGGAGAAATGCAGCTCGAAGGAGTTGGACCTCGGCCTTCCTCCGATGACGGTCGATTCTTTATCACAGATGATTTACCGGAAAGCTCTGATGGATGATCCGACGAGCCAGGAACCGATCACCATTTTTTATGATGGGCGGGTTTATGTTTTCGATATCATGGAACTTCAGGTTAGAGCCATAATCTTGTTTGCAACTAGAGAAATGGAAGGAGGGATGACATCAAGGTCCTCCAAAGAAACAGTATCACTTGCATTGCAATCACAAATACTTGTTCCTCCATGTGGATCCGTGAAGAAATCTCTCCAAACATTTCTGCAAAACAGAAAGAACGAAGCTTCTGATCCGTACAGCCACAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

5.36

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	38 - 67	9e-10	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39780 FvH4_6g39780
malus_domestica	MD09G1136800.v1.1 MD17G1127000.v1.1
prunus_persica	Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1
pyrus_communis	pycom17g11930
rosa_chinensis	RchiOBHm_Chr2g0153891
rosa_laevigata	RLG00000020737
rosa_multiflora	Rmu_sc0003887.1_g000009 Rmu_sc0016331.1_g000001 Rmu_sc0023546.1_g000002
rosa_roxburghii	Rroxscaffold_2G00094670
rosa_rugosa	Rorug02G0443000
rosa_samantha	Rh2AG506800 Rh2BG516800 Rh2CG492500 Rh2DG528900
rosa_wichuraiana	Rw2G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	232
AciI	CCGC	1 cut(s)	145
AclWI	GGATC	4 cut(s)	98, 288, 301, 344
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	3 cut(s)	21, 92, 344
AluI	AGCT	3 cut(s)	21, 92, 344
AlwI	GGATC	4 cut(s)	98, 288, 301, 344
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	34, 234
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	2 cut(s)	34, 234
BamHI	GGATCC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	2 cut(s)	91, 134
BciT130I	CCWGG	1 cut(s)	116
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	34, 234
BmgT120I	GGNCC	2 cut(s)	34, 234
BmiI	GGNNCC	2 cut(s)	120, 295
BmrFI	CCNGG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse3DI	GCAATG	2 cut(s)	12, 260
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	106, 228
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	2 cut(s)	12, 260
BseXI	GCAGC	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	290
BsnI	GGCC	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	103, 123, 293, 349
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	120, 295
BspPI	GGATC	4 cut(s)	98, 288, 301, 344
BsrDI	GCAATG	2 cut(s)	12, 260
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	4 cut(s)	103, 123, 293, 349
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	58, 250
BstF5I	GGATG	2 cut(s)	106, 228
BstKTI	GATC	4 cut(s)	106, 126, 296, 352
BstMBI	GATC	4 cut(s)	103, 123, 293, 349
BstMCI	CGRYCG	1 cut(s)	60
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	106, 228
Cfr13I	GGNCC	2 cut(s)	34, 234
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	2 cut(s)	166, 288
CviJI	RGCY	7 cut(s)	21, 42, 92, 114, 185, 344, 360
CviKI_1	RGCY	7 cut(s)	21, 42, 92, 114, 185, 344, 360
CviQI	GTAC	1 cut(s)	355
DpnI	GATC	4 cut(s)	105, 125, 295, 351
DpnII	GATC	4 cut(s)	103, 123, 293, 349
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	34, 234
Eco57I	CTGAAG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	163
FaeI	CATG	2 cut(s)	169, 291
FaiI	YATR	6 cut(s)	138, 153, 167, 188, 289, 370
FatI	CATG	2 cut(s)	165, 287
FauI	CCCGC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	2 cut(s)	113, 235
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	85
Hin1II	CATG	2 cut(s)	169, 291
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	4 cut(s)	51, 96, 108, 349
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	19, 53, 209
HpyCH4III	ACNGT	2 cut(s)	58, 250
HpyCH4V	TGCA	5 cut(s)	18, 200, 260, 265, 325
Hsp92II	CATG	2 cut(s)	169, 291
Kzo9I	GATC	4 cut(s)	103, 123, 293, 349
LpnPI	CCDG	4 cut(s)	98, 101, 128, 161
Lsp1109I	GCAGC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	204
MalI	GATC	4 cut(s)	105, 125, 295, 351
MboI	GATC	4 cut(s)	103, 123, 293, 349
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	1 cut(s)	364
MmeI	TCCRAC	2 cut(s)	12, 131
MnlI	CCTC	5 cut(s)	47, 57, 212, 247, 294
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
NdeII	GATC	4 cut(s)	103, 123, 293, 349
NlaIII	CATG	2 cut(s)	169, 291
NlaIV	GGNNCC	2 cut(s)	120, 295
NmeAIII	GCCGAG	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	120, 295
PspPI	GGNCC	2 cut(s)	34, 234
PspPPI	RGGWCCY	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	4 cut(s)	103, 123, 293, 349
Sau96I	GGNCC	2 cut(s)	34, 234
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	6 cut(s)	23, 39, 94, 180, 236, 346
SinI	GGWCC	2 cut(s)	34, 234
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	58, 250
TaqI	TCGA	3 cut(s)	23, 60, 159
TasI	AATT	1 cut(s)	364
TfiI	GAWTC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	357
TspGWI	ACGGA	2 cut(s)	286, 342
VpaK11BI	GGWCC	2 cut(s)	34, 234
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.