Prupe.3G188200_v2.0.a1

TIFY 5A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011584
Physical Location & Seq
Reverse (-)
20163672 .. 20164876
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G188200.1

Sequence Viewer

Length: 363 bp
ATGCCCACTCCTTCACCGCCGTTGGAAACTCCAATGAGATTTCAATTGGCATCTCTTTTCTTCCCCTGTATCTTTCTTAGGGGCGACTGGACTCTGGACCAGCAGCAGCAAATTACCATTTTTTATAATGGCCAAGTTTTCGTTAGCGACATAACTGAACTTCAGGCTAGGGCCATGATTTTGTTGGCAGCTGGAGATATGGCAGAAAGGGGGATATCAAGTGTGTCAAACGCAGCGTTGCTTGCATTGCAATCTCAAATATATGGGCCTCCGGGTGTGTCCATGAAGAGGTCTCTTCAGAGCTTTCTCCAAAAGAGGAAGAAAAGAAGTCAAGAAGCTTCTCCATACAACAGCCTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT_2 tify

Protein Analysis

121

Amino Acids

13.41

Weight (kDa)

9.36

Isoelectric Point (pI)

75.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AciI CCGC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 130
AcuI CTGAAG 2 cut(s) 146, 281
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 3 cut(s) 191, 303, 338
AluI AGCT 3 cut(s) 191, 303, 338
Alw26I GTCTC 1 cut(s) 297
AoxI GGCC 3 cut(s) 130, 171, 266
ApeKI GCWGC 4 cut(s) 103, 106, 188, 233
AspS9I GGNCC 3 cut(s) 97, 171, 266
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 6
AvaII GGWCC 1 cut(s) 97
BalI TGGCCA 1 cut(s) 132
BbvI GCAGC 4 cut(s) 115, 118, 200, 245
BceAI ACGGC 1 cut(s) 4
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 1 cut(s) 168
BisI GCNGC 4 cut(s) 104, 107, 189, 234
BlsI GCNGC 4 cut(s) 105, 108, 190, 235
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 97, 171, 266
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 92
BseXI GCAGC 4 cut(s) 115, 118, 200, 245
BshFI GGCC 3 cut(s) 132, 173, 268
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 297
BsnI GGCC 3 cut(s) 132, 173, 268
Bso31I GGTCTC 1 cut(s) 297
BspACI CCGC 1 cut(s) 17
BspANI GGCC 3 cut(s) 132, 173, 268
BspTNI GGTCTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 245
BsrI ACTGG 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 281, 300
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 77
BstMAI GTCTC 1 cut(s) 297
BstMWI GCNNNNNNNGC 2 cut(s) 242, 247
BstSCI CCNGG 1 cut(s) 271
BstV1I GCAGC 4 cut(s) 115, 118, 200, 245
BsuRI GGCC 3 cut(s) 132, 173, 268
Cac8I GCNNGC 1 cut(s) 243
Cfr13I GGNCC 3 cut(s) 97, 171, 266
CviAII CATG 2 cut(s) 175, 283
CviJI RGCY 8 cut(s) 132, 167, 173, 191, 268, 303, 338, 354
CviKI_1 RGCY 8 cut(s) 132, 167, 173, 191, 268, 303, 338, 354
DdeI CTNAG 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 281, 300
EarI CTCTTC 2 cut(s) 281, 300
Eco31I GGTCTC 1 cut(s) 297
Eco32I GATATC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 146, 281
EcoRV GATATC 1 cut(s) 216
FaeI CATG 2 cut(s) 178, 286
FaiI YATR 8 cut(s) 126, 152, 176, 200, 262, 264, 284, 346
FatI CATG 2 cut(s) 174, 282
Fnu4HI GCNGC 4 cut(s) 104, 107, 189, 234
Fsp4HI GCNGC 4 cut(s) 104, 107, 189, 234
FspBI CTAG 1 cut(s) 168
GluI GCNGC 4 cut(s) 104, 107, 189, 234
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 3 cut(s) 132, 173, 268
HapII CCGG 1 cut(s) 272
Hin1II CATG 2 cut(s) 178, 286
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 1 cut(s) 91
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 300
Hpy188III TCNNGA 2 cut(s) 95, 332
HpyAV CCTTC 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 245, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 247
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 2 cut(s) 178, 286
LpnPI CCDG 7 cut(s) 73, 79, 80, 113, 149, 177, 285
Lsp1109I GCAGC 4 cut(s) 115, 118, 200, 245
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 168
MboII GAAGA 4 cut(s) 52, 287, 298, 331
MfeI CAATTG 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 2 cut(s) 44, 111
MluNI TGGCCA 1 cut(s) 132
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 3 cut(s) 279, 282, 309
Mox20I TGGCCA 1 cut(s) 132
MscI TGGCCA 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 242, 247
NciI CCSGG 1 cut(s) 273
NlaIII CATG 2 cut(s) 178, 286
PkrI GCNGC 4 cut(s) 105, 108, 190, 235
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PsiI TTATAA 1 cut(s) 126
PspPI GGNCC 3 cut(s) 97, 171, 266
PvuII CAGCTG 1 cut(s) 191
SatI GCNGC 4 cut(s) 104, 107, 189, 234
Sau96I GGNCC 3 cut(s) 97, 171, 266
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 273
SetI ASST 4 cut(s) 193, 293, 305, 340
SfaNI GCATC 1 cut(s) 59
SinI GGWCC 1 cut(s) 97
Sse9I AATT 2 cut(s) 44, 111
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 271
TasI AATT 2 cut(s) 44, 111
TseI GCWGC 4 cut(s) 103, 106, 188, 233
TspDTI ATGAA 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 97
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.