Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011584

Physical Location & Seq

Genomic Coordinates Forward (+)

11148981 .. 11150657

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1127000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCCACTTCTGAACCACAGTCGGATTCTCACAAAATTCCAACGGGTGAGTCAACTCGGAGCGAAGAACAAATTACAATTTTCTATAATGGACAAGTTTTTGTTTGCGACGTGATGGAACTTCAGGCTAGGGCCATAATTTTGTTGGCAGCTAGAGAAATGGAAGGAAGAGACAGATCAATGTGGTCCAGCGCAGCATTGCTTGCATTGCACTATCAAATTTATGGGCCTCCAGGTGTGTCCCTGAAGAGGTCTCTTCAAAGCTTTCTCCAAAAGAGAAAGCAAAGAAGTCAAGCAGCTTCTCCATACAACTCCACCACCAACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

110

Amino Acids

12.22

Weight (kDa)

8.89

Isoelectric Point (pI)

81.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	23 - 51	2.7e-11	tify domain
Jas_motif	PF09425	83 - 103	5.1e-06	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39780 FvH4_6g39780
malus_domestica	MD09G1136800.v1.1 MD17G1127000.v1.1
prunus_persica	Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1
pyrus_communis	pycom17g11930
rosa_chinensis	RchiOBHm_Chr2g0153891
rosa_laevigata	RLG00000020737
rosa_multiflora	Rmu_sc0003887.1_g000009 Rmu_sc0016331.1_g000001 Rmu_sc0023546.1_g000002
rosa_roxburghii	Rroxscaffold_2G00094670
rosa_rugosa	Rorug02G0443000
rosa_samantha	Rh2AG506800 Rh2BG516800 Rh2CG492500 Rh2DG528900
rosa_wichuraiana	Rw2G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	36, 219
AcuI	CTGAAG	2 cut(s)	107, 266
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	260
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	3 cut(s)	152, 264, 299
AluI	AGCT	3 cut(s)	152, 264, 299
Alw26I	GTCTC	2 cut(s)	165, 258
AoxI	GGCC	3 cut(s)	3, 132, 227
ApeKI	GCWGC	3 cut(s)	149, 194, 296
ApoI	RAATTY	2 cut(s)	36, 219
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	3 cut(s)	132, 186, 227
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	186
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	161, 206, 308
BccI	CCATC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	165, 258
BfaI	CTAG	2 cut(s)	129, 153
BisI	GCNGC	3 cut(s)	150, 195, 297
BlsI	GCNGC	3 cut(s)	151, 196, 298
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	186
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	132, 186, 227
BmrFI	CCNGG	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse3DI	GCAATG	2 cut(s)	197, 206
BseBI	CCWGG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMI	GCAATG	2 cut(s)	197, 206
BseXI	GCAGC	3 cut(s)	161, 206, 308
BshFI	GGCC	3 cut(s)	5, 134, 229
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	2 cut(s)	165, 258
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	5, 134, 229
Bso31I	GGTCTC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	176
BspANI	GGCC	3 cut(s)	5, 134, 229
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	2 cut(s)	197, 206
BssMI	GATC	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	21
Bst6I	CTCTTC	3 cut(s)	163, 242, 261
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	2 cut(s)	165, 258
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 208
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstV1I	GCAGC	3 cut(s)	161, 206, 308
BsuRI	GGCC	3 cut(s)	5, 134, 229
BtrI	CACGTC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	132, 186, 227
CviJI	RGCY	7 cut(s)	5, 128, 134, 152, 229, 264, 299
CviKI_1	RGCY	7 cut(s)	5, 128, 134, 152, 229, 264, 299
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	163, 242, 261
EarI	CTCTTC	3 cut(s)	163, 242, 261
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	186
Eco57I	CTGAAG	2 cut(s)	107, 266
EcoRII	CCWGG	1 cut(s)	232
FaiI	YATR	5 cut(s)	87, 137, 225, 307, 328
FaqI	GGGAC	1 cut(s)	226
Fnu4HI	GCNGC	3 cut(s)	150, 195, 297
Fsp4HI	GCNGC	3 cut(s)	150, 195, 297
FspBI	CTAG	2 cut(s)	129, 153
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	3 cut(s)	150, 195, 297
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	5, 134, 229
HhaI	GCGC	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	2 cut(s)	26, 50
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	3 cut(s)	13, 25, 60
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	206, 211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 208
HpySE526I	ACGT	1 cut(s)	111
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	176
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	5 cut(s)	110, 202, 219, 246, 257
Lsp1109I	GCAGC	3 cut(s)	161, 206, 308
MaeI	CTAG	2 cut(s)	129, 153
MaeII	ACGT	1 cut(s)	111
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	4 cut(s)	77, 180, 248, 259
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	36, 72, 78, 138, 219
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	240, 243
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	203, 208
NdeII	GATC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	151, 196, 298
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspPI	GGNCC	3 cut(s)	132, 186, 227
SatI	GCNGC	3 cut(s)	150, 195, 297
Sau3AI	GATC	1 cut(s)	176
Sau96I	GGNCC	3 cut(s)	132, 186, 227
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	7 cut(s)	114, 154, 238, 254, 266, 301, 327
SinI	GGWCC	1 cut(s)	186
Sse9I	AATT	5 cut(s)	36, 72, 78, 138, 219
SspMI	CTAG	2 cut(s)	129, 153
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	1 cut(s)	114
TasI	AATT	5 cut(s)	36, 72, 78, 138, 219
TfiI	GAWTC	1 cut(s)	26
TseI	GCWGC	3 cut(s)	149, 194, 296
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	2 cut(s)	36, 219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XspI	CTAG	2 cut(s)	129, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.