Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016331.1

Orthogroup ID

OG0011584

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 486

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

atggagaaatgcagctcgaaggagttggacctcggccttcctccgatgacggtcgattctttatcacagatgatttaccggaaagctctgatggatgatccgacgagccaggaaccgatcaccattttttatgatgggcgggtttatgttttcgatatcatggaacttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

57

Amino Acids

6.59

Weight (kDa)

4.24

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39780 FvH4_6g39780
malus_domestica	MD09G1136800.v1.1 MD17G1127000.v1.1
prunus_persica	Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1
pyrus_communis	pycom17g11930
rosa_chinensis	RchiOBHm_Chr2g0153891
rosa_laevigata	RLG00000020737
rosa_multiflora	Rmu_sc0003887.1_g000009 Rmu_sc0016331.1_g000001 Rmu_sc0023546.1_g000002
rosa_roxburghii	Rroxscaffold_2G00094670
rosa_rugosa	Rorug02G0443000
rosa_samantha	Rh2AG506800 Rh2BG516800 Rh2CG492500 Rh2DG528900
rosa_wichuraiana	Rw2G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	15, 86
AluI	AGCT	2 cut(s)	15, 86
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	2 cut(s)	85, 128
BciT130I	CCWGG	1 cut(s)	110
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	79
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	97, 117
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	97, 117
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	2 cut(s)	100, 120
BstMBI	GATC	2 cut(s)	97, 117
BstMCI	CGRYCG	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	28
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	4 cut(s)	15, 36, 86, 108
CviKI_1	RGCY	4 cut(s)	15, 36, 86, 108
DpnI	GATC	2 cut(s)	99, 119
DpnII	GATC	2 cut(s)	97, 117
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	157
FaeI	CATG	1 cut(s)	163
FaiI	YATR	3 cut(s)	132, 147, 161
FatI	CATG	1 cut(s)	159
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	1 cut(s)	163
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	3 cut(s)	45, 90, 102
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	2 cut(s)	13, 47
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	97, 117
LpnPI	CCDG	3 cut(s)	92, 95, 122
Lsp1109I	GCAGC	1 cut(s)	24
MalI	GATC	2 cut(s)	99, 119
MboI	GATC	2 cut(s)	97, 117
MmeI	TCCRAC	2 cut(s)	6, 125
MnlI	CCTC	2 cut(s)	41, 51
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	97, 117
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	114
NmeAIII	GCCGAG	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	28
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	2 cut(s)	97, 117
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	3 cut(s)	17, 33, 88
SgeI	CNNG	7 cut(s)	28, 44, 91, 117, 121, 122, 152
SinI	GGWCC	1 cut(s)	28
SsiI	CCGC	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	3 cut(s)	17, 54, 153
TfiI	GAWTC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.