Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0011584

Physical Location & Seq

Genomic Coordinates Reverse (-)

67622376 .. 67623857

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G041600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTTAGGGATGAGCCGACCAGCCAGGAACCGATCACCATTTTTTATGATGGGCGGGTTTATGTTTTCGATATCATGGAACTTCAGGTTAGAGCCATAATCTTGTTTGCAACTAGAGAAATGGAAGGAGGGATGACATCAAGGTCCTCCAAAGAAACAGCATCACTTGCATTGCAATCACAAATACTTGTTCCTCCATGTGGATCCGTGAAGAAATCTCTCCAAACATTTCTGCAAAACAGAAAGAACGAAGCTTCTGATCCGTACAGCCACAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

93

Amino Acids

10.53

Weight (kDa)

5.75

Isoelectric Point (pI)

65.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	8 - 37	5.3e-10	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39780 FvH4_6g39780
malus_domestica	MD09G1136800.v1.1 MD17G1127000.v1.1
prunus_persica	Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1 Prupe.3G188200_v2.0.a1
pyrus_communis	pycom17g11930
rosa_chinensis	RchiOBHm_Chr2g0153891
rosa_laevigata	RLG00000020737
rosa_multiflora	Rmu_sc0003887.1_g000009 Rmu_sc0016331.1_g000001 Rmu_sc0023546.1_g000002
rosa_roxburghii	Rroxscaffold_2G00094670
rosa_rugosa	Rorug02G0443000
rosa_samantha	Rh2AG506800 Rh2BG516800 Rh2CG492500 Rh2DG528900
rosa_wichuraiana	Rw2G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	142
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	3 cut(s)	198, 211, 254
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
AlwI	GGATC	3 cut(s)	198, 211, 254
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	203
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	26
BfaI	CTAG	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	30, 205
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	16, 138
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	200
Bsp143I	GATC	3 cut(s)	33, 203, 259
BspACI	CCGC	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	30, 205
BspPI	GGATC	3 cut(s)	198, 211, 254
BsrDI	GCAATG	1 cut(s)	170
BssMI	GATC	3 cut(s)	33, 203, 259
Bst2UI	CCWGG	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	16, 138
BstKTI	GATC	3 cut(s)	36, 206, 262
BstMBI	GATC	3 cut(s)	33, 203, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	16, 138
Cfr13I	GGNCC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	76, 198
CviJI	RGCY	5 cut(s)	16, 24, 95, 254, 270
CviKI_1	RGCY	5 cut(s)	16, 24, 95, 254, 270
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	3 cut(s)	35, 205, 261
DpnII	GATC	3 cut(s)	33, 203, 259
DrdI	GACNNNNNNGTC	1 cut(s)	142
DseDI	GACNNNNNNGTC	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	73
FaeI	CATG	2 cut(s)	79, 201
FaiI	YATR	6 cut(s)	48, 63, 77, 98, 199, 280
FatI	CATG	2 cut(s)	75, 197
FauI	CCCGC	1 cut(s)	48
FokI	GGATG	2 cut(s)	23, 145
FspBI	CTAG	1 cut(s)	114
Hin1II	CATG	2 cut(s)	79, 201
HindIII	AAGCTT	1 cut(s)	252
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	4 cut(s)	110, 170, 175, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	79, 201
Kzo9I	GATC	3 cut(s)	33, 203, 259
LpnPI	CCDG	4 cut(s)	11, 34, 38, 71
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	114
MalI	GATC	3 cut(s)	35, 205, 261
MboI	GATC	3 cut(s)	33, 203, 259
MboII	GAAGA	1 cut(s)	223
MflI	RGATCY	1 cut(s)	203
MluCI	AATT	1 cut(s)	274
MnlI	CCTC	3 cut(s)	122, 157, 204
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	3 cut(s)	33, 203, 259
NlaIII	CATG	2 cut(s)	79, 201
NlaIV	GGNNCC	2 cut(s)	30, 205
PpuMI	RGGWCCY	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	30, 205
PspPI	GGNCC	1 cut(s)	144
PspPPI	RGGWCCY	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	203
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
Sau3AI	GATC	3 cut(s)	33, 203, 259
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	26
SetI	ASST	3 cut(s)	90, 146, 256
SfaNI	GCATC	1 cut(s)	170
SinI	GGWCC	1 cut(s)	144
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	24
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	2 cut(s)	196, 252
VpaK11BI	GGWCC	1 cut(s)	144
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.