FvH4_6g41750

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010965
Physical Location & Seq
Reverse (-)
32738128 .. 32742099
3972 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41750.t2

Sequence Viewer

Length: 972 bp
ATGGCCTTGCAGGCTGGTTCTGGGGTTTCGACCTCTCAGGTTCTCGTTCTTGTTGGAGCAGGCCTGACAAGTTCGATCATTTTGAGGAGTGGAAAGTTGTCTGATCTTCTTGCACAGCTTCAGGAGTTATGTAAGGGTGTAAATGAAGTTGAGATCTTGCCGGAGAAATTTGATAGTTCAATTCTCAGAGCTCAGATTCAACAGTTGTCGGAAGAAATCAGGGAGCTAACCTTATCTGGCCCTGTTACCATCTACAATGGGAATTCTGACTCTGGTGGGAGTTACGCCTCGTACTTAATTCCAGCTGCTGCACTTGGTGCTATGGGATATTGCTACATGAAGTGGAAGGGATGGTCATTTTCTGATGTAATGTATGTAACAAGGCATAATATGGCAAATGCTGTTGAAACTGTGTCAAAACAATTGGAGACTGTGCATGAAACATTGGCTATAACAAGAAGACATCTAACCAAAAAGCTGGAAGAGTTGGATTGGAAGGTGGAGGAGCAGAGGGAAACAACACAGCTTGTTGCAAATGGTGTGAATGAGGTGAAATCAAACCTGTCTCAAATTGGGTTTGATGTTGATGCGATTCATCAACTGGTCTCTGGATTGGAAGGGAAGGTTGATCTTCTTGAGAGCAAACAGGATGTGACAAACTCAGGTCTGTGGTACCTGTGCCAAGTAGCTGAAGCCTCCAAAGATCGCCCGGAAACTAAAACAATTCAGGATGTCTCTGCTAAGGTGACAAAGTATTTAACAATGACATCAGAGGACAAATCACTCAAGGGCCTCCAATTTATTGCTGAAACTAAAGACCCAAGCAAGGTTGAAAAATCAATGACAAGCACGGAATCTATTGATCCCAGCAACTTCCCTGGCCAAAAAGTTCCAGCCATGAAAACAAGAATACACAGATCGTTTCCTATTGGGATTTCTTTGCACCGGAACATAAAGAGCTTGGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

324

Amino Acids

35.51

Weight (kDa)

5.94

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 94 - 216 1.4e-45 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04960 AT1G04960
fragaria_vesca FvH4_6g41750 FvH4_6g41750
malus_domestica MD09G1117500.v1.1 MD17G1108700.v1.1
prunus_persica Prupe.3G206300_v2.0.a1 Prupe.3G206300_v2.0.a1
pyrus_communis pycom17g10140
rosa_chinensis RchiOBHm_Chr2g0157541
rosa_laevigata RLG00000020996
rosa_multiflora Rmu_sc0000195.1_g000040
rosa_roxburghii Rroxscaffold_2G00092140
rosa_rugosa Rorug02G0461900
rosa_samantha Rh2AG526000 Rh2BG540700 Rh2CG510700 Rh2DG549200 Rh4BG150000
rosa_wichuraiana Rw2G043570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 672
AccB1I GGYRCC 1 cut(s) 672
AclWI GGATC 1 cut(s) 857
AcoI YGGCCR 1 cut(s) 880
AcsI RAATTY 2 cut(s) 167, 262
AcuI CTGAAG 2 cut(s) 104, 711
AdeI CACNNNGTG 1 cut(s) 317
AfaI GTAC 2 cut(s) 293, 674
AfiI CCNNNNNNNGG 1 cut(s) 826
AgsI TTSAA 4 cut(s) 180, 200, 407, 833
AjnI CCWGG 1 cut(s) 877
AluBI AGCT 8 cut(s) 118, 191, 226, 305, 478, 526, 689, 960
AluI AGCT 8 cut(s) 118, 191, 226, 305, 478, 526, 689, 960
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 4 cut(s) 422, 570, 610, 739
AlwI GGATC 1 cut(s) 857
AlwNI CAGNNNCTG 1 cut(s) 308
AoxI GGCC 5 cut(s) 3, 61, 238, 790, 880
ApeKI GCWGC 2 cut(s) 305, 308
ApoI RAATTY 2 cut(s) 167, 262
Asp718I GGTACC 1 cut(s) 672
AspS9I GGNCC 2 cut(s) 239, 790
AsuC2I CCSGG 1 cut(s) 710
AsuHPI GGTGA 2 cut(s) 562, 757
BalI TGGCCA 1 cut(s) 882
BanI GGYRCC 1 cut(s) 672
BanII GRGCYC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 292, 295
BccI CCATC 2 cut(s) 257, 345
BciT130I CCWGG 1 cut(s) 879
BcnI CCSGG 1 cut(s) 710
BcoDI GTCTC 4 cut(s) 422, 570, 610, 739
BglI GCCNNNNNGGC 1 cut(s) 11
BglII AGATCT 1 cut(s) 153
BisI GCNGC 2 cut(s) 306, 309
BlsI GCNGC 2 cut(s) 307, 310
Bme1390I CCNGG 2 cut(s) 710, 879
BmgT120I GGNCC 2 cut(s) 239, 790
BmiI GGNNCC 1 cut(s) 674
BmrFI CCNGG 2 cut(s) 710, 879
BmsI GCATC 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 466
Bpu10I CCTNAGC 1 cut(s) 741
BpuEI CTTGAG 2 cut(s) 656, 770
BpuMI CCSGG 1 cut(s) 710
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 1 cut(s) 877
BsaWI WCCGGW 1 cut(s) 945
Bsc4I CCNNNNNNNGG 1 cut(s) 826
Bse1I ACTGG 1 cut(s) 606
BseBI CCWGG 1 cut(s) 879
BseDI CCNNGG 1 cut(s) 877
BseGI GGATG 3 cut(s) 356, 655, 736
BseLI CCNNNNNNNGG 1 cut(s) 826
BseMII CTCAG 4 cut(s) 50, 199, 206, 675
BseNI ACTGG 1 cut(s) 606
BseRI GAGGAG 2 cut(s) 100, 518
BseXI GCAGC 2 cut(s) 292, 295
BseYI CCCAGC 1 cut(s) 866
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 5 cut(s) 5, 63, 240, 792, 882
BshNI GGYRCC 1 cut(s) 672
BsiHKAI GWGCWC 1 cut(s) 193
BsiSI CCGG 3 cut(s) 161, 710, 946
BslI CCNNNNNNNGG 1 cut(s) 826
BsmAI GTCTC 4 cut(s) 422, 570, 610, 739
BsnI GGCC 5 cut(s) 5, 63, 240, 792, 882
Bso31I GGTCTC 1 cut(s) 610
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 7 cut(s) 75, 103, 153, 628, 703, 862, 917
BspANI GGCC 5 cut(s) 5, 63, 240, 792, 882
BspCNI CTCAG 4 cut(s) 49, 198, 205, 674
BspHI TCATGA 1 cut(s) 968
BspLI GGNNCC 1 cut(s) 674
BspPI GGATC 1 cut(s) 857
BspT107I GGYRCC 1 cut(s) 672
BspTNI GGTCTC 1 cut(s) 610
BsrI ACTGG 1 cut(s) 606
BssECI CCNNGG 1 cut(s) 877
BssMI GATC 7 cut(s) 75, 103, 153, 628, 703, 862, 917
Bst2UI CCWGG 1 cut(s) 879
Bst4CI ACNGT 3 cut(s) 204, 412, 433
Bst6I CTCTTC 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 12, 61
BstDEI CTNAG 5 cut(s) 36, 185, 192, 661, 741
BstF5I GGATG 3 cut(s) 356, 655, 736
BstKTI GATC 7 cut(s) 78, 106, 156, 631, 706, 865, 920
BstMAI GTCTC 4 cut(s) 422, 570, 610, 739
BstMBI GATC 7 cut(s) 75, 103, 153, 628, 703, 862, 917
BstMWI GCNNNNNNNGC 2 cut(s) 11, 317
BstNI CCWGG 1 cut(s) 879
BstSCI CCNGG 2 cut(s) 708, 877
BstV1I GCAGC 2 cut(s) 292, 295
BstV2I GAAGAC 1 cut(s) 466
BstX2I RGATCY 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 478
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 5 cut(s) 5, 63, 240, 792, 882
BtsCI GGATG 3 cut(s) 356, 655, 736
Cac8I GCNNGC 2 cut(s) 12, 61
CaiI CAGNNNCTG 1 cut(s) 308
CciI TCATGA 1 cut(s) 968
Cfr13I GGNCC 2 cut(s) 239, 790
Csp6I GTAC 2 cut(s) 292, 673
CviAII CATG 4 cut(s) 337, 437, 898, 969
CviQI GTAC 2 cut(s) 292, 673
DdeI CTNAG 5 cut(s) 36, 185, 192, 661, 741
DpnI GATC 7 cut(s) 77, 105, 155, 630, 705, 864, 919
DpnII GATC 7 cut(s) 75, 103, 153, 628, 703, 862, 917
DraIII CACNNNGTG 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 880
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Ecl136II GAGCTC 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 610
Eco53kI GAGCTC 1 cut(s) 191
Eco57I CTGAAG 2 cut(s) 104, 711
EcoICRI GAGCTC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 790
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 877
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 4 cut(s) 340, 440, 901, 972
FatI CATG 4 cut(s) 336, 436, 897, 968
Fnu4HI GCNGC 2 cut(s) 306, 309
FokI GGATG 3 cut(s) 363, 662, 743
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 2 cut(s) 306, 309
GluI GCNGC 2 cut(s) 306, 309
GsaI CCCAGC 1 cut(s) 870
HaeIII GGCC 5 cut(s) 5, 63, 240, 792, 882
HapII CCGG 3 cut(s) 161, 710, 946
Hin1II CATG 4 cut(s) 340, 440, 901, 972
HinfI GANTC 5 cut(s) 196, 269, 592, 854, 965
HpaII CCGG 3 cut(s) 161, 710, 946
HphI GGTGA 2 cut(s) 562, 757
Hpy188I TCNGA 7 cut(s) 103, 188, 195, 211, 268, 364, 772
Hpy188III TCNNGA 5 cut(s) 122, 609, 635, 728, 969
HpyAV CCTTC 4 cut(s) 340, 490, 611, 616
HpyCH4III ACNGT 3 cut(s) 204, 412, 433
HpyCH4V TGCA 6 cut(s) 10, 113, 311, 436, 533, 943
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 317
HpyF3I CTNAG 5 cut(s) 36, 185, 192, 661, 741
Hsp92II CATG 4 cut(s) 340, 440, 901, 972
KpnI GGTACC 1 cut(s) 676
Kzo9I GATC 7 cut(s) 75, 103, 153, 628, 703, 862, 917
LmnI GCTCC 3 cut(s) 56, 223, 505
Lsp1109I GCAGC 2 cut(s) 292, 295
LweI GCATC 1 cut(s) 577
MaeIII GTNAC 5 cut(s) 244, 281, 376, 652, 745
MalI GATC 7 cut(s) 77, 105, 155, 630, 705, 864, 919
MboI GATC 7 cut(s) 75, 103, 153, 628, 703, 862, 917
MboII GAAGA 5 cut(s) 98, 224, 471, 494, 623
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 193
MlsI TGGCCA 1 cut(s) 882
MluCI AATT 8 cut(s) 167, 180, 262, 297, 422, 570, 723, 797
MluNI TGGCCA 1 cut(s) 882
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 3 cut(s) 34, 189, 468
MnlI CCTC 9 cut(s) 43, 78, 298, 496, 504, 541, 706, 766, 803
Mox20I TGGCCA 1 cut(s) 882
MscI TGGCCA 1 cut(s) 882
MseI TTAA 2 cut(s) 296, 758
Msp20I TGGCCA 1 cut(s) 882
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 3 cut(s) 161, 710, 946
MspR9I CCNGG 2 cut(s) 710, 879
MunI CAATTG 1 cut(s) 422
MvaI CCWGG 1 cut(s) 879
MwoI GCNNNNNNNGC 2 cut(s) 11, 317
NciI CCSGG 1 cut(s) 710
NdeII GATC 7 cut(s) 75, 103, 153, 628, 703, 862, 917
NlaIII CATG 4 cut(s) 340, 440, 901, 972
NlaIV GGNNCC 1 cut(s) 674
NmuCI GTSAC 2 cut(s) 652, 745
PagI TCATGA 1 cut(s) 968
PceI AGGCCT 1 cut(s) 63
PfeI GAWTC 4 cut(s) 196, 592, 854, 965
PkrI GCNGC 2 cut(s) 307, 310
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 877
PspFI CCCAGC 1 cut(s) 866
PspGI CCWGG 1 cut(s) 877
PspN4I GGNNCC 1 cut(s) 674
PspPI GGNCC 2 cut(s) 239, 790
PstNI CAGNNNCTG 1 cut(s) 308
PsuI RGATCY 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 2 cut(s) 293, 674
RsaNI GTAC 2 cut(s) 292, 673
SacI GAGCTC 1 cut(s) 193
SaqAI TTAA 2 cut(s) 296, 758
SatI GCNGC 2 cut(s) 306, 309
Sau3AI GATC 7 cut(s) 75, 103, 153, 628, 703, 862, 917
Sau96I GGNCC 2 cut(s) 239, 790
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 710, 879
SduI GDGCHC 1 cut(s) 193
SfaNI GCATC 1 cut(s) 577
SmlI CTYRAG 2 cut(s) 635, 785
SmoI CTYRAG 2 cut(s) 635, 785
Sse9I AATT 8 cut(s) 167, 180, 262, 297, 422, 570, 723, 797
SseBI AGGCCT 1 cut(s) 63
SstI GAGCTC 1 cut(s) 193
StuI AGGCCT 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 708, 877
TaaI ACNGT 3 cut(s) 204, 412, 433
TaqI TCGA 2 cut(s) 29, 74
TasI AATT 8 cut(s) 167, 180, 262, 297, 422, 570, 723, 797
TfiI GAWTC 4 cut(s) 196, 592, 854, 965
Tru1I TTAA 2 cut(s) 296, 758
Tru9I TTAA 2 cut(s) 296, 758
TseFI GTSAC 2 cut(s) 652, 745
TseI GCWGC 2 cut(s) 305, 308
Tsp45I GTSAC 2 cut(s) 652, 745
TspDTI ATGAA 6 cut(s) 159, 353, 453, 584, 914, 957
TspGWI ACGGA 1 cut(s) 866
XapI RAATTY 2 cut(s) 167, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.