Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010965

Physical Location & Seq

Genomic Coordinates Forward (+)

59343008 .. 59344893

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0461900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTCCGACAAGGAGGAAGAGGACGAAGCAGAGGAGAAAGGCGAGGGCTGGTTTTACCATCAAGATCAACAAGGAGGAACAAAAACAAGTTGAGGCCTCGGAGCGTGAGATTGCGAATCTGAATCTGGGCGACAAGAGCAAGACTCATGGTAGCAAGGGGCAAGAATCAAAGGATCATCTAGAAACTGCCCGTGATGACTTTTTGGGCATAGATATTCCAGTGTCATGTAGAAGGAAATTAGCAGGTTGTGCCTGTTGTGGCGAGTATGATCACCTTAATGTAACCTGCCCATTCCTAAAATATATTCCTGAAGGCGCTAAAATTGGCCGTGGCTTTGAGACAATATGCCGGGGTTGTCACCGTATTGGAAAGGTGTGCTGTGTTAAGAGGGGGAAGTCTGTGGGAGGATATGCTAAGCTGAAGATGTGTGCTTATTGTTTCTGTATTGGTCACTGGGAGTGGGAGGACTGTGAAGATTGTCCTAGACCCAAGGACGTCGTCTTTGAGAAAGATGAATACTTAGATGGGGATGGGATTTCCTCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1664

Protein Analysis

183

Amino Acids

20.66

Weight (kDa)

8.72

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04960 AT1G04960
fragaria_vesca	FvH4_6g41750 FvH4_6g41750
malus_domestica	MD09G1117500.v1.1 MD17G1108700.v1.1
prunus_persica	Prupe.3G206300_v2.0.a1 Prupe.3G206300_v2.0.a1
pyrus_communis	pycom17g10140
rosa_chinensis	RchiOBHm_Chr2g0157541
rosa_laevigata	RLG00000020996
rosa_multiflora	Rmu_sc0000195.1_g000040
rosa_roxburghii	Rroxscaffold_2G00092140
rosa_rugosa	Rorug02G0461900
rosa_samantha	Rh2AG526000 Rh2BG540700 Rh2CG510700 Rh2DG549200 Rh4BG150000
rosa_wichuraiana	Rw2G043570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	501
Acc36I	ACCTGC	2 cut(s)	236, 296
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	328
AcuI	CTGAAG	2 cut(s)	333, 443
AcyI	GRCGYC	1 cut(s)	498
AluBI	AGCT	1 cut(s)	421
AluI	AGCT	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	2 cut(s)	96, 328
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
AspLEI	GCGC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	266, 353
BccI	CCATC	3 cut(s)	68, 521, 527
BceAI	ACGGC	1 cut(s)	315
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	2 cut(s)	182, 486
BfoI	RGCGCY	1 cut(s)	321
BfuAI	ACCTGC	2 cut(s)	236, 296
BlpI	GCTNAGC	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	353
BmrI	ACTGGG	1 cut(s)	466
BmuI	ACTGGG	1 cut(s)	466
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
Bpu1102I	GCTNAGC	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	498
BsaJI	CCNNGG	4 cut(s)	99, 331, 352, 492
Bse1I	ACTGG	2 cut(s)	221, 461
BseDI	CCNNGG	4 cut(s)	99, 331, 352, 492
BseGI	GGATG	1 cut(s)	538
BseNI	ACTGG	2 cut(s)	221, 461
BseRI	GAGGAG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	98, 330
BsiSI	CCGG	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	98, 330
Bsp143I	GATC	3 cut(s)	66, 175, 271
Bsp1720I	GCTNAGC	1 cut(s)	417
BspANI	GGCC	2 cut(s)	98, 330
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	236, 296
BspPI	GGATC	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	221, 461
BssECI	CCNNGG	4 cut(s)	99, 331, 352, 492
BssMI	GATC	3 cut(s)	66, 175, 271
BssNI	GRCGYC	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	365, 473
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	498
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	417, 523, 544
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	1 cut(s)	538
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	3 cut(s)	69, 178, 274
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	3 cut(s)	66, 175, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 251
BstSCI	CCNGG	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	98, 330
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	538
BtsIMutI	CAGTG	2 cut(s)	228, 454
BveI	ACCTGC	2 cut(s)	236, 296
CfoI	GCGC	1 cut(s)	320
CviAII	CATG	2 cut(s)	149, 228
CviJI	RGCY	6 cut(s)	5, 50, 98, 330, 336, 421
CviKI_1	RGCY	6 cut(s)	5, 50, 98, 330, 336, 421
DdeI	CTNAG	3 cut(s)	417, 523, 544
DpnI	GATC	3 cut(s)	68, 177, 273
DpnII	GATC	3 cut(s)	66, 175, 271
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	492
Eco147I	AGGCCT	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	333, 443
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	2 cut(s)	152, 231
FaiI	YATR	7 cut(s)	150, 212, 229, 270, 306, 349, 414
FatI	CATG	2 cut(s)	148, 227
FbaI	TGATCA	1 cut(s)	271
FokI	GGATG	1 cut(s)	545
FspBI	CTAG	2 cut(s)	182, 486
GlaI	GCGC	1 cut(s)	319
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	98, 330
HapII	CCGG	1 cut(s)	352
HhaI	GCGC	1 cut(s)	320
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	152, 231
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HinfI	GANTC	4 cut(s)	118, 124, 145, 167
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	2 cut(s)	266, 353
Hpy188I	TCNGA	4 cut(s)	9, 103, 123, 547
Hpy188III	TCNNGA	3 cut(s)	64, 182, 311
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	2 cut(s)	228, 308
HpyCH4III	ACNGT	2 cut(s)	365, 473
HpyCH4IV	ACGT	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 251
HpyF3I	CTNAG	3 cut(s)	417, 523, 544
HpySE526I	ACGT	1 cut(s)	498
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	2 cut(s)	152, 231
HspAI	GCGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	66, 175, 271
LmnI	GCTCC	2 cut(s)	10, 103
LpnPI	CCDG	9 cut(s)	36, 113, 231, 234, 268, 301, 324, 365, 442
MaeI	CTAG	2 cut(s)	182, 486
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	3 cut(s)	283, 359, 452
MalI	GATC	3 cut(s)	68, 177, 273
MboI	GATC	3 cut(s)	66, 175, 271
MboII	GAAGA	3 cut(s)	31, 436, 488
MluCI	AATT	2 cut(s)	239, 324
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	32
MseI	TTAA	2 cut(s)	279, 387
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	2 cut(s)	138, 251
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	3 cut(s)	66, 175, 271
NlaIII	CATG	2 cut(s)	152, 231
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	359, 452
PceI	AGGCCT	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	118, 124, 167
PflFI	GACNNNGTC	1 cut(s)	500
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	500
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	279, 387
Sau3AI	GATC	3 cut(s)	66, 175, 271
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	353
SetI	ASST	6 cut(s)	250, 279, 290, 378, 423, 501
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	2 cut(s)	239, 324
SseBI	AGGCCT	1 cut(s)	98
SspMI	CTAG	2 cut(s)	182, 486
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	365, 473
TaiI	ACGT	1 cut(s)	501
TasI	AATT	2 cut(s)	239, 324
TfiI	GAWTC	3 cut(s)	118, 124, 167
Tru1I	TTAA	2 cut(s)	279, 387
Tru9I	TTAA	2 cut(s)	279, 387
TscAI	CASTG	2 cut(s)	228, 461
TseFI	GTSAC	2 cut(s)	359, 452
Tsp45I	GTSAC	2 cut(s)	359, 452
TspDTI	ATGAA	1 cut(s)	531
TspRI	CASTG	2 cut(s)	228, 461
Tth111I	GACNNNGTC	1 cut(s)	500
XbaI	TCTAGA	1 cut(s)	181
XspI	CTAG	2 cut(s)	182, 486
ZraI	GACGTC	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.