Rh4BG150000

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0010965
Physical Location & Seq
Reverse (-)
26814864 .. 26816985
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG150000.1

Sequence Viewer

Length: 348 bp
ATGAATGAGGTGAAATCAAACCCTTTTCAAATTGGGTTTGTTGTTGACGCGATTCATCAATTGGTCTATGGGTTGGAAGGCAAGGTCGATCTTCTCAAGAGCAAACAGGATGCGACAAACTTATGTCTATGGTACCTATGCCAAGTAGCTGAAGGCTCCAAAGATCGGATGGAAAGTAGAACAATTCATGATGTATCTGCTAAGCTAACAAAGCATTTGAGAATGACATCTGAGGACAAATCATTCAAAATCACATCTTGGTCTGCACCTCCAATTTCGGAGACGATCGGCGCGGTGCTCTCTATCTCTCACTTTCATCGATCACGGATCTTTGTGGCGCCTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

115

Amino Acids

12.9

Weight (kDa)

8.62

Isoelectric Point (pI)

28.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04960 AT1G04960
fragaria_vesca FvH4_6g41750 FvH4_6g41750
malus_domestica MD09G1117500.v1.1 MD17G1108700.v1.1
prunus_persica Prupe.3G206300_v2.0.a1 Prupe.3G206300_v2.0.a1
pyrus_communis pycom17g10140
rosa_chinensis RchiOBHm_Chr2g0157541
rosa_laevigata RLG00000020996
rosa_multiflora Rmu_sc0000195.1_g000040
rosa_roxburghii Rroxscaffold_2G00092140
rosa_rugosa Rorug02G0461900
rosa_samantha Rh2AG526000 Rh2BG540700 Rh2CG510700 Rh2DG549200 Rh4BG150000
rosa_wichuraiana Rw2G043570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 2 cut(s) 132, 337
AccII CGCG 2 cut(s) 50, 293
AciI CCGC 1 cut(s) 293
AclWI GGATC 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 171
AcyI GRCGYC 1 cut(s) 338
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 2 cut(s) 29, 247
AluBI AGCT 2 cut(s) 149, 205
AluI AGCT 2 cut(s) 149, 205
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 335
Asp718I GGTACC 1 cut(s) 132
AspLEI GCGC 2 cut(s) 293, 340
AsuHPI GGTGA 1 cut(s) 22
BanI GGYRCC 2 cut(s) 132, 337
Bbv12I GWGCWC 1 cut(s) 300
BccI CCATC 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 341
BlpI GCTNAGC 1 cut(s) 201
BmiI GGNNCC 3 cut(s) 134, 157, 339
BmsI GCATC 1 cut(s) 100
Bpu1102I GCTNAGC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 319
BsaHI GRCGYC 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 319
BseGI GGATG 2 cut(s) 115, 174
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 249
Bsh1236I CGCG 2 cut(s) 50, 293
Bsh1285I CGRYCG 1 cut(s) 288
BshNI GGYRCC 2 cut(s) 132, 337
BshVI ATCGAT 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 275
BsmBI CGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 5 cut(s) 88, 163, 285, 320, 327
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 223
BspDI ATCGAT 1 cut(s) 319
BspFNI CGCG 2 cut(s) 50, 293
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 134, 157, 339
BspPI GGATC 1 cut(s) 335
BspT107I GGYRCC 2 cut(s) 132, 337
BssMI GATC 5 cut(s) 88, 163, 285, 320, 327
BssNI GRCGYC 1 cut(s) 338
BstACI GRCGYC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 2 cut(s) 201, 231
BstF5I GGATG 2 cut(s) 115, 174
BstFNI CGCG 2 cut(s) 50, 293
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 2 cut(s) 293, 340
BstKTI GATC 5 cut(s) 91, 166, 288, 323, 330
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 5 cut(s) 88, 163, 285, 320, 327
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstUI CGCG 2 cut(s) 50, 293
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
Bsu15I ATCGAT 1 cut(s) 319
BsuTUI ATCGAT 1 cut(s) 319
BtsCI GGATG 2 cut(s) 115, 174
Cac8I GCNNGC 1 cut(s) 342
CciI TCATGA 1 cut(s) 187
CfoI GCGC 2 cut(s) 293, 340
ClaI ATCGAT 1 cut(s) 319
CseI GACGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 188
CviJI RGCY 3 cut(s) 149, 156, 205
CviKI_1 RGCY 3 cut(s) 149, 156, 205
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 201, 231
DinI GGCGCC 1 cut(s) 339
DpnI GATC 5 cut(s) 90, 165, 287, 322, 329
DpnII GATC 5 cut(s) 88, 163, 285, 320, 327
Eco57I CTGAAG 1 cut(s) 171
EgeI GGCGCC 1 cut(s) 339
EheI GGCGCC 1 cut(s) 339
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 1 cut(s) 191
FaiI YATR 5 cut(s) 69, 124, 130, 139, 189
FatI CATG 1 cut(s) 187
FokI GGATG 2 cut(s) 122, 181
GlaI GCGC 2 cut(s) 292, 339
HaeII RGCGCY 1 cut(s) 341
HgaI GACGC 1 cut(s) 56
HhaI GCGC 2 cut(s) 293, 340
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 1 cut(s) 191
Hin6I GCGC 2 cut(s) 291, 338
HinP1I GCGC 2 cut(s) 291, 338
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 52
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 3 cut(s) 168, 232, 280
Hpy188III TCNNGA 2 cut(s) 97, 188
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 71, 146
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 2 cut(s) 201, 231
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 1 cut(s) 191
HspAI GCGC 2 cut(s) 291, 338
KasI GGCGCC 1 cut(s) 337
KpnI GGTACC 1 cut(s) 136
Kzo9I GATC 5 cut(s) 88, 163, 285, 320, 327
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 1 cut(s) 92
LweI GCATC 1 cut(s) 100
MalI GATC 5 cut(s) 90, 165, 287, 322, 329
MboI GATC 5 cut(s) 88, 163, 285, 320, 327
MboII GAAGA 1 cut(s) 83
MfeI CAATTG 1 cut(s) 59
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 4 cut(s) 30, 59, 183, 273
Mly113I GGCGCC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 2 cut(s) 226, 279
MunI CAATTG 1 cut(s) 59
MvnI CGCG 2 cut(s) 50, 293
MwoI GCNNNNNNNGC 1 cut(s) 211
NarI GGCGCC 1 cut(s) 338
NdeII GATC 5 cut(s) 88, 163, 285, 320, 327
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 3 cut(s) 134, 157, 339
PagI TCATGA 1 cut(s) 187
PfeI GAWTC 1 cut(s) 52
Ple19I CGATCG 1 cut(s) 288
PluTI GGCGCC 1 cut(s) 341
PspN4I GGNNCC 3 cut(s) 134, 157, 339
PsuI RGATCY 1 cut(s) 327
PvuI CGATCG 1 cut(s) 288
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
Sau3AI GATC 5 cut(s) 88, 163, 285, 320, 327
SduI GDGCHC 1 cut(s) 300
SetI ASST 6 cut(s) 12, 87, 138, 151, 207, 271
SfaNI GCATC 1 cut(s) 100
SfoI GGCGCC 1 cut(s) 339
SgeI CNNG 9 cut(s) 61, 94, 109, 119, 155, 200, 270, 304, 336
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 4 cut(s) 30, 59, 183, 273
SsiI CCGC 1 cut(s) 293
SspDI GGCGCC 1 cut(s) 337
TaqI TCGA 2 cut(s) 87, 319
TasI AATT 4 cut(s) 30, 59, 183, 273
TfiI GAWTC 1 cut(s) 52
TspDTI ATGAA 4 cut(s) 17, 44, 176, 305
TspGWI ACGGA 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.