Rroxscaffold_2G00092140

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010965
Physical Location & Seq
Forward (+)
13666582 .. 13670327
3746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00092140.1

Sequence Viewer

Length: 975 bp
ATGGCCTTGCAAGCTGGTTCTGGGGTTTCGACCTCCCAGGTTCTCGTTCTTGTTGGAGCAGGCTTGACGAGTTCGATCATTTTGAGGAATGGGCGTTTGTCTGATCTTCTTGCACAGCTTCAGGAGTTATGCAAGGGTGTAAATGAAGTTGAGATCTTTCCGGAGAAATTTGATAGCTCAATTCTTAGAGCTCAGATTCAACAATTGTCGGAAGAAATCAGGGAGTTAACCTTATCTTCTGGCCCCGTTACCATCTACAATGGGAATTCTGACTCTGGTGGGAGTTATGCCTCGTACTTAATTCCAGCTGCTGCACTTGGTGCTATGGGATATTGCTACATGAAGTGGAAGGGATGGTCATTTTCTGATGTAATGTATGTAACAAGGCATAATATGGCGAATGCTGTTGCAACTGTGTCAAAGCAATTAGAGACTGTGCATGAAACATTGGCTATTACAAGAAGACATCTGACCAAGAAGCTGGAAGAGTTGGATTGGAAGGTGGAGGAACAGAGGGAAACAACGCAGCTTATTGCAAATGGTGTGAATGAGGTGAAATCAAACCTTTCTCAAATTGGGTTTGATGTTGATGCGATTCATCAACTGGTCTCTGGGTTGGAAGGCAAGGTCGATCTTCTCGAGAGCAAACAGGATGTGACAAACTCAGGTCTATGGTACCTATGCCAAGTAGCTGAAGGCTCAAAAGATCGGCTGGAAACTAAAACAATTCAGGATGTCTCTGCTAAGCTAACAAAGCATTTAACATTCACATCTGAGGACAAATCACTCGAGGGCCTCCAATTCATTGCTGACACTAAAGAACCGAGCATGGTTGAGAAATCAATGACAAGCACGGAAACTACTAATCCCAGCAACTTCACTGGCCAAAAAGTTCCAGCCCTAAAAACAAGAATACACAGGTCGTATCCTGTTGGGATTTCTTTGTACCGGAACATAACGAGCTTGGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

324

Amino Acids

35.64

Weight (kDa)

5.62

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 95 - 217 1.5e-45 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04960 AT1G04960
fragaria_vesca FvH4_6g41750 FvH4_6g41750
malus_domestica MD09G1117500.v1.1 MD17G1108700.v1.1
prunus_persica Prupe.3G206300_v2.0.a1 Prupe.3G206300_v2.0.a1
pyrus_communis pycom17g10140
rosa_chinensis RchiOBHm_Chr2g0157541
rosa_laevigata RLG00000020996
rosa_multiflora Rmu_sc0000195.1_g000040
rosa_roxburghii Rroxscaffold_2G00092140
rosa_rugosa Rorug02G0461900
rosa_samantha Rh2AG526000 Rh2BG540700 Rh2CG510700 Rh2DG549200 Rh4BG150000
rosa_wichuraiana Rw2G043570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 675
AccB1I GGYRCC 1 cut(s) 675
AccIII TCCGGA 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 883
AcsI RAATTY 2 cut(s) 167, 265
AcuI CTGAAG 2 cut(s) 104, 714
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 3 cut(s) 296, 677, 947
AgsI TTSAA 1 cut(s) 200
AjnI CCWGG 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 3 cut(s) 425, 613, 742
AlwNI CAGNNNCTG 1 cut(s) 311
Ama87I CYCGRG 2 cut(s) 638, 788
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 4 cut(s) 3, 241, 793, 883
ApeKI GCWGC 3 cut(s) 308, 311, 526
ApoI RAATTY 2 cut(s) 167, 265
Asp718I GGTACC 1 cut(s) 675
AspS9I GGNCC 2 cut(s) 242, 793
AsuHPI GGTGA 1 cut(s) 565
AvaI CYCGRG 2 cut(s) 638, 788
BalI TGGCCA 1 cut(s) 885
BanI GGYRCC 1 cut(s) 675
BanII GRGCYC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 3 cut(s) 295, 298, 538
BccI CCATC 2 cut(s) 260, 348
BciT130I CCWGG 1 cut(s) 38
BciVI GTATCC 1 cut(s) 936
BcoDI GTCTC 3 cut(s) 425, 613, 742
BfuI GTATCC 1 cut(s) 936
BglII AGATCT 1 cut(s) 153
BisI GCNGC 3 cut(s) 309, 312, 527
BlpI GCTNAGC 1 cut(s) 744
BlsI GCNGC 3 cut(s) 310, 313, 528
Bme1390I CCNGG 1 cut(s) 38
BmeT110I CYCGRG 2 cut(s) 638, 788
BmgT120I GGNCC 2 cut(s) 242, 793
BmiI GGNNCC 2 cut(s) 244, 677
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 580
BpiI GAAGAC 1 cut(s) 469
Bpu1102I GCTNAGC 1 cut(s) 744
BsaI GGTCTC 1 cut(s) 613
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 2 cut(s) 160, 948
Bse1I ACTGG 2 cut(s) 609, 886
Bse3DI GCAATG 1 cut(s) 804
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 359, 658, 739
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 3 cut(s) 206, 678, 765
BseNI ACTGG 2 cut(s) 609, 886
BseXI GCAGC 3 cut(s) 295, 298, 538
BseYI CCCAGC 1 cut(s) 869
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 4 cut(s) 5, 243, 795, 885
BshNI GGYRCC 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 193
BsiHKCI CYCGRG 2 cut(s) 638, 788
BsiSI CCGG 2 cut(s) 161, 949
BsmAI GTCTC 3 cut(s) 425, 613, 742
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 4 cut(s) 5, 243, 795, 885
Bso31I GGTCTC 1 cut(s) 613
BsoBI CYCGRG 2 cut(s) 638, 788
Bsp1286I GDGCHC 1 cut(s) 193
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 5 cut(s) 75, 103, 153, 631, 706
Bsp1720I GCTNAGC 1 cut(s) 744
BspANI GGCC 4 cut(s) 5, 243, 795, 885
BspCNI CTCAG 3 cut(s) 205, 677, 766
BspEI TCCGGA 1 cut(s) 160
BspHI TCATGA 1 cut(s) 971
BspLI GGNNCC 2 cut(s) 244, 677
BspT107I GGYRCC 1 cut(s) 675
BspTNI GGTCTC 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 804
BsrI ACTGG 2 cut(s) 609, 886
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 5 cut(s) 75, 103, 153, 631, 706
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 415, 436
Bst6I CTCTTC 1 cut(s) 480
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 12, 61
BstDEI CTNAG 5 cut(s) 185, 192, 664, 744, 774
BstF5I GGATG 3 cut(s) 359, 658, 739
BstKTI GATC 5 cut(s) 78, 106, 156, 634, 709
BstMAI GTCTC 3 cut(s) 425, 613, 742
BstMBI GATC 5 cut(s) 75, 103, 153, 631, 706
BstMWI GCNNNNNNNGC 3 cut(s) 11, 320, 754
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 295, 298, 538
BstV2I GAAGAC 1 cut(s) 469
BstX2I RGATCY 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 1 cut(s) 153
BsuI GTATCC 1 cut(s) 936
BsuRI GGCC 4 cut(s) 5, 243, 795, 885
BtsCI GGATG 3 cut(s) 359, 658, 739
BtsIMutI CAGTG 1 cut(s) 879
Cac8I GCNNGC 2 cut(s) 12, 61
CaiI CAGNNNCTG 1 cut(s) 311
CciI TCATGA 1 cut(s) 971
Cfr13I GGNCC 2 cut(s) 242, 793
Csp6I GTAC 3 cut(s) 295, 676, 946
CviAII CATG 4 cut(s) 340, 440, 829, 972
CviQI GTAC 3 cut(s) 295, 676, 946
DdeI CTNAG 5 cut(s) 185, 192, 664, 744, 774
DpnI GATC 5 cut(s) 77, 105, 155, 633, 708
DpnII GATC 5 cut(s) 75, 103, 153, 631, 706
DraIII CACNNNGTG 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 883
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Ecl136II GAGCTC 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 613
Eco53kI GAGCTC 1 cut(s) 191
Eco57I CTGAAG 2 cut(s) 104, 714
Eco88I CYCGRG 2 cut(s) 638, 788
EcoICRI GAGCTC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 793
EcoRI GAATTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 4 cut(s) 343, 443, 832, 975
FatI CATG 4 cut(s) 339, 439, 828, 971
Fnu4HI GCNGC 3 cut(s) 309, 312, 527
FokI GGATG 3 cut(s) 366, 665, 746
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 3 cut(s) 309, 312, 527
GluI GCNGC 3 cut(s) 309, 312, 527
GsaI CCCAGC 1 cut(s) 873
HaeIII GGCC 4 cut(s) 5, 243, 795, 885
HapII CCGG 2 cut(s) 161, 949
Hin1II CATG 4 cut(s) 343, 443, 832, 975
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 4 cut(s) 196, 272, 595, 968
HpaI GTTAAC 1 cut(s) 228
HpaII CCGG 2 cut(s) 161, 949
HphI GGTGA 1 cut(s) 565
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 7 cut(s) 103, 195, 211, 271, 367, 471, 775
Hpy188III TCNNGA 6 cut(s) 122, 161, 638, 640, 731, 972
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 4 cut(s) 343, 493, 614, 689
HpyCH4III ACNGT 2 cut(s) 415, 436
HpyCH4V TGCA 7 cut(s) 10, 113, 132, 314, 410, 439, 536
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 320, 754
HpyF3I CTNAG 5 cut(s) 185, 192, 664, 744, 774
Hsp92II CATG 4 cut(s) 343, 443, 832, 975
Kpn2I TCCGGA 1 cut(s) 160
KpnI GGTACC 1 cut(s) 679
KspAI GTTAAC 1 cut(s) 228
Kzo9I GATC 5 cut(s) 75, 103, 153, 631, 706
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 3 cut(s) 295, 298, 538
LweI GCATC 1 cut(s) 580
MaeIII GTNAC 3 cut(s) 247, 379, 655
MalI GATC 5 cut(s) 77, 105, 155, 633, 708
MboI GATC 5 cut(s) 75, 103, 153, 631, 706
MboII GAAGA 6 cut(s) 98, 224, 228, 474, 497, 626
MfeI CAATTG 1 cut(s) 203
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 193
MlsI TGGCCA 1 cut(s) 885
MluCI AATT 9 cut(s) 167, 180, 203, 265, 300, 425, 573, 726, 800
MluNI TGGCCA 1 cut(s) 885
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 4 cut(s) 34, 189, 471, 597
MnlI CCTC 9 cut(s) 43, 78, 301, 499, 507, 544, 769, 784, 806
Mox20I TGGCCA 1 cut(s) 885
MroI TCCGGA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 885
MseI TTAA 3 cut(s) 227, 299, 761
Msp20I TGGCCA 1 cut(s) 885
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 2 cut(s) 161, 949
MspR9I CCNGG 1 cut(s) 38
MunI CAATTG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 11, 320, 754
NdeII GATC 5 cut(s) 75, 103, 153, 631, 706
NlaIII CATG 4 cut(s) 343, 443, 832, 975
NlaIV GGNNCC 2 cut(s) 244, 677
NmuCI GTSAC 1 cut(s) 655
PaeR7I CTCGAG 2 cut(s) 638, 788
PagI TCATGA 1 cut(s) 971
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 3 cut(s) 196, 595, 968
PkrI GCNGC 3 cut(s) 310, 313, 528
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Psp124BI GAGCTC 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 869
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 244, 677
PspPI GGNCC 2 cut(s) 242, 793
PspXI VCTCGAGB 1 cut(s) 788
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 3 cut(s) 296, 677, 947
RsaNI GTAC 3 cut(s) 295, 676, 946
SacI GAGCTC 1 cut(s) 193
SaqAI TTAA 3 cut(s) 227, 299, 761
SatI GCNGC 3 cut(s) 309, 312, 527
Sau3AI GATC 5 cut(s) 75, 103, 153, 631, 706
Sau96I GGNCC 2 cut(s) 242, 793
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 193
SfaNI GCATC 1 cut(s) 580
Sfr274I CTCGAG 2 cut(s) 638, 788
SlaI CTCGAG 2 cut(s) 638, 788
SmlI CTYRAG 2 cut(s) 638, 788
SmoI CTYRAG 2 cut(s) 638, 788
Sse9I AATT 9 cut(s) 167, 180, 203, 265, 300, 425, 573, 726, 800
SstI GAGCTC 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 415, 436
TaqI TCGA 5 cut(s) 29, 74, 630, 639, 789
TasI AATT 9 cut(s) 167, 180, 203, 265, 300, 425, 573, 726, 800
TfiI GAWTC 3 cut(s) 196, 595, 968
Tru1I TTAA 3 cut(s) 227, 299, 761
Tru9I TTAA 3 cut(s) 227, 299, 761
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 1 cut(s) 655
TseI GCWGC 3 cut(s) 308, 311, 526
Tsp45I GTSAC 1 cut(s) 655
TspDTI ATGAA 6 cut(s) 159, 356, 456, 587, 793, 960
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 1 cut(s) 886
XapI RAATTY 2 cut(s) 167, 265
XhoI CTCGAG 2 cut(s) 638, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.