Rh2DG549200

Protein of unknown function (DUF1664)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010965
Physical Location & Seq
Reverse (-)
77819885 .. 77823890
4006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG549200.1

Sequence Viewer

Length: 972 bp
ATGGCGTTACAGGCTGGGTCTGGGGTTTCGACCTCTCAGGTTCTCGTTCTTGTTGGAGCAGGCTTGACGAGTTCGATCATTTTGAGGAATGGCCGTTTGTCTGATCTTCTTGCACAGCTTCAGGAGTTATGCAAGGGTGTAAATGAAGTTGAGATCTTGCCGGAGAAATTTGATAGCTCAATTCTTAGAGCTCAGATTCAACAATTGTCGGAAGAAATCAGGGAGTTAACCTTATCTGGCCCTGTTACCATCTACAATGGGAATCCTGACTCTGGTGGGAGTTATGCCTCGTACTTAATTCCAGCTGCTGCACTTGGTGCTATGGGATATTGCTACATGAAGTGGAAGGGATGGTCATTTTCTGATGTAATGTATGTAACAAGGCATAATATGGCGAATGCTGTTGCAACTGTGTCAAAGCAACTAGAGACTGTGCATGAAACATTGGCTATTACAAGGAGACATCTGACCAAGAAGCTGGAAGAGTTGGATTGGAAGGTGGAGGAGCAGAGGGAAACAACGCAGCTTATTGCAAATGGTGTGAATGAGGTGAAATCAAACCTTTCTCAAATTGGGTTTGATGTTGACGTTATTCATCAAATGGTCTCTGGGTTGGAAGGCAAGGTCGATCTTCTCGAGAGCAAACAGGATGTGACAAACTCAGGTCTATGGTACCTATGCCAAGTAGCTGAAGGCTCCAAAGATCGGCTGGAAACTAAAACAATTCAGGATGTCTCTGCTAAGCTGACAAAGCATTTAACAATGACATCTGAGGACAAATCACTCAAGGGCCTCCAATTCATTGCTGAAACTAAAGAGCCGAGCATGGTTGAGAAATCAATGACAAGCACGGAAACTGCTAATCCCAGCAACTTCCCTGGCCAAAAAGTTCCAGCCCTGAAAACAAGAATACACAGGTCGTATCCTGTTGGGATTTCTTTGCACCGGAACATAACGAGCTCAGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1664

Protein Analysis

323

Amino Acids

35.49

Weight (kDa)

6.02

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1664 PF07889 94 - 216 1.3e-45 Protein of unknown function (DUF1664)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04960 AT1G04960
fragaria_vesca FvH4_6g41750 FvH4_6g41750
malus_domestica MD09G1117500.v1.1 MD17G1108700.v1.1
prunus_persica Prupe.3G206300_v2.0.a1 Prupe.3G206300_v2.0.a1
pyrus_communis pycom17g10140
rosa_chinensis RchiOBHm_Chr2g0157541
rosa_laevigata RLG00000020996
rosa_multiflora Rmu_sc0000195.1_g000040
rosa_roxburghii Rroxscaffold_2G00092140
rosa_rugosa Rorug02G0461900
rosa_samantha Rh2AG526000 Rh2BG540700 Rh2CG510700 Rh2DG549200 Rh4BG150000
rosa_wichuraiana Rw2G043570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 672
AccB1I GGYRCC 1 cut(s) 672
AcoI YGGCCR 2 cut(s) 91, 880
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 2 cut(s) 104, 711
AdeI CACNNNGTG 1 cut(s) 317
AfaI GTAC 2 cut(s) 293, 674
AfiI CCNNNNNNNGG 2 cut(s) 272, 705
AgsI TTSAA 1 cut(s) 200
AjnI CCWGG 1 cut(s) 877
AluBI AGCT 9 cut(s) 118, 177, 191, 305, 478, 526, 689, 745, 960
AluI AGCT 9 cut(s) 118, 177, 191, 305, 478, 526, 689, 745, 960
Alw21I GWGCWC 2 cut(s) 193, 962
Alw26I GTCTC 4 cut(s) 422, 454, 610, 739
AlwNI CAGNNNCTG 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 4 cut(s) 91, 238, 790, 880
ApeKI GCWGC 3 cut(s) 305, 308, 523
ApoI RAATTY 1 cut(s) 167
Asp718I GGTACC 1 cut(s) 672
AspS9I GGNCC 2 cut(s) 239, 790
AsuHPI GGTGA 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 635
BalI TGGCCA 1 cut(s) 882
BanI GGYRCC 1 cut(s) 672
BanII GRGCYC 2 cut(s) 193, 962
Bbv12I GWGCWC 2 cut(s) 193, 962
BbvI GCAGC 3 cut(s) 292, 295, 535
BccI CCATC 2 cut(s) 257, 345
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 879
BciVI GTATCC 1 cut(s) 933
BcoDI GTCTC 4 cut(s) 422, 454, 610, 739
BfaI CTAG 1 cut(s) 425
BfuI GTATCC 1 cut(s) 933
BglII AGATCT 1 cut(s) 153
BisI GCNGC 3 cut(s) 306, 309, 524
BlpI GCTNAGC 1 cut(s) 741
BlsI GCNGC 3 cut(s) 307, 310, 525
Bme1390I CCNGG 1 cut(s) 879
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 2 cut(s) 239, 790
BmiI GGNNCC 2 cut(s) 674, 697
BmrFI CCNGG 1 cut(s) 879
Bpu1102I GCTNAGC 1 cut(s) 741
BpuEI CTTGAG 1 cut(s) 770
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 1 cut(s) 877
BsaWI WCCGGW 1 cut(s) 945
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 705
Bse3DI GCAATG 1 cut(s) 801
BseBI CCWGG 1 cut(s) 879
BseDI CCNNGG 1 cut(s) 877
BseGI GGATG 3 cut(s) 356, 655, 736
BseLI CCNNNNNNNGG 2 cut(s) 272, 705
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 4 cut(s) 50, 206, 675, 762
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 3 cut(s) 292, 295, 535
BseYI CCCAGC 2 cut(s) 14, 866
BsgI GTGCAG 1 cut(s) 294
BshFI GGCC 4 cut(s) 93, 240, 792, 882
BshNI GGYRCC 1 cut(s) 672
BsiHKAI GWGCWC 2 cut(s) 193, 962
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 2 cut(s) 161, 946
BslI CCNNNNNNNGG 2 cut(s) 272, 705
BsmAI GTCTC 4 cut(s) 422, 454, 610, 739
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 4 cut(s) 93, 240, 792, 882
Bso31I GGTCTC 1 cut(s) 610
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 2 cut(s) 193, 962
Bsp143I GATC 5 cut(s) 75, 103, 153, 628, 703
Bsp1720I GCTNAGC 1 cut(s) 741
BspANI GGCC 4 cut(s) 93, 240, 792, 882
BspCNI CTCAG 4 cut(s) 49, 205, 674, 763
BspLI GGNNCC 2 cut(s) 674, 697
BspT107I GGYRCC 1 cut(s) 672
BspTNI GGTCTC 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 801
BssECI CCNNGG 1 cut(s) 877
BssMI GATC 5 cut(s) 75, 103, 153, 628, 703
Bst2UI CCWGG 1 cut(s) 879
Bst4CI ACNGT 2 cut(s) 412, 433
Bst6I CTCTTC 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 7 cut(s) 36, 185, 192, 661, 741, 771, 961
BstF5I GGATG 3 cut(s) 356, 655, 736
BstKTI GATC 5 cut(s) 78, 106, 156, 631, 706
BstMAI GTCTC 4 cut(s) 422, 454, 610, 739
BstMBI GATC 5 cut(s) 75, 103, 153, 628, 703
BstMWI GCNNNNNNNGC 3 cut(s) 11, 317, 751
BstNI CCWGG 1 cut(s) 879
BstSCI CCNGG 1 cut(s) 877
BstV1I GCAGC 3 cut(s) 292, 295, 535
BstX2I RGATCY 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 478
BstYI RGATCY 1 cut(s) 153
BsuI GTATCC 1 cut(s) 933
BsuRI GGCC 4 cut(s) 93, 240, 792, 882
BtsCI GGATG 3 cut(s) 356, 655, 736
Cac8I GCNNGC 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 308
Cfr13I GGNCC 2 cut(s) 239, 790
Csp6I GTAC 2 cut(s) 292, 673
CviAII CATG 3 cut(s) 337, 437, 826
CviQI GTAC 2 cut(s) 292, 673
DdeI CTNAG 7 cut(s) 36, 185, 192, 661, 741, 771, 961
DpnI GATC 5 cut(s) 77, 105, 155, 630, 705
DpnII GATC 5 cut(s) 75, 103, 153, 628, 703
DraIII CACNNNGTG 1 cut(s) 317
EaeI YGGCCR 2 cut(s) 91, 880
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Ecl136II GAGCTC 2 cut(s) 191, 960
Eco24I GRGCYC 2 cut(s) 193, 962
Eco31I GGTCTC 1 cut(s) 610
Eco53kI GAGCTC 2 cut(s) 191, 960
Eco57I CTGAAG 2 cut(s) 104, 711
Eco88I CYCGRG 1 cut(s) 635
EcoICRI GAGCTC 2 cut(s) 191, 960
EcoO109I RGGNCCY 1 cut(s) 790
EcoRII CCWGG 1 cut(s) 877
EcoT38I GRGCYC 2 cut(s) 193, 962
FaeI CATG 3 cut(s) 340, 440, 829
FatI CATG 3 cut(s) 336, 436, 825
Fnu4HI GCNGC 3 cut(s) 306, 309, 524
FokI GGATG 3 cut(s) 363, 662, 743
FriOI GRGCYC 2 cut(s) 193, 962
Fsp4HI GCNGC 3 cut(s) 306, 309, 524
FspBI CTAG 1 cut(s) 425
GluI GCNGC 3 cut(s) 306, 309, 524
GsaI CCCAGC 2 cut(s) 18, 870
HaeIII GGCC 4 cut(s) 93, 240, 792, 882
HapII CCGG 2 cut(s) 161, 946
Hin1II CATG 3 cut(s) 340, 440, 829
HincII GTYRAC 2 cut(s) 228, 586
HindII GTYRAC 2 cut(s) 228, 586
HinfI GANTC 4 cut(s) 196, 262, 269, 965
HpaI GTTAAC 1 cut(s) 228
HpaII CCGG 2 cut(s) 161, 946
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 2 cut(s) 228, 586
Hpy188I TCNGA 7 cut(s) 103, 195, 211, 364, 468, 772, 964
Hpy188III TCNNGA 6 cut(s) 122, 266, 635, 637, 728, 969
Hpy8I GTNNAC 2 cut(s) 228, 586
HpyAV CCTTC 4 cut(s) 340, 490, 611, 686
HpyCH4III ACNGT 2 cut(s) 412, 433
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 7 cut(s) 113, 132, 311, 407, 436, 533, 943
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 317, 751
HpyF3I CTNAG 7 cut(s) 36, 185, 192, 661, 741, 771, 961
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 3 cut(s) 340, 440, 829
KpnI GGTACC 1 cut(s) 676
KspAI GTTAAC 1 cut(s) 228
Kzo9I GATC 5 cut(s) 75, 103, 153, 628, 703
LmnI GCTCC 3 cut(s) 56, 505, 701
Lsp1109I GCAGC 3 cut(s) 292, 295, 535
MaeI CTAG 1 cut(s) 425
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 4 cut(s) 6, 244, 376, 652
MalI GATC 5 cut(s) 77, 105, 155, 630, 705
MboI GATC 5 cut(s) 75, 103, 153, 628, 703
MboII GAAGA 4 cut(s) 98, 224, 494, 623
MfeI CAATTG 1 cut(s) 203
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 2 cut(s) 193, 962
MlsI TGGCCA 1 cut(s) 882
MluCI AATT 7 cut(s) 167, 180, 203, 297, 570, 723, 797
MluNI TGGCCA 1 cut(s) 882
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 4 cut(s) 34, 189, 468, 594
MnlI CCTC 8 cut(s) 43, 78, 298, 496, 504, 541, 766, 803
Mox20I TGGCCA 1 cut(s) 882
MscI TGGCCA 1 cut(s) 882
MseI TTAA 3 cut(s) 227, 296, 758
Msp20I TGGCCA 1 cut(s) 882
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 2 cut(s) 161, 946
MspR9I CCNGG 1 cut(s) 879
MunI CAATTG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 1 cut(s) 879
MwoI GCNNNNNNNGC 3 cut(s) 11, 317, 751
NdeII GATC 5 cut(s) 75, 103, 153, 628, 703
NlaIII CATG 3 cut(s) 340, 440, 829
NlaIV GGNNCC 2 cut(s) 674, 697
NmeAIII GCCGAG 1 cut(s) 846
NmuCI GTSAC 1 cut(s) 652
PaeR7I CTCGAG 1 cut(s) 635
PcsI WCGNNNNNNNCGW 1 cut(s) 633
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 3 cut(s) 196, 262, 965
PkrI GCNGC 3 cut(s) 307, 310, 525
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Psp124BI GAGCTC 2 cut(s) 193, 962
Psp6I CCWGG 1 cut(s) 877
PspFI CCCAGC 2 cut(s) 14, 866
PspGI CCWGG 1 cut(s) 877
PspN4I GGNNCC 2 cut(s) 674, 697
PspPI GGNCC 2 cut(s) 239, 790
PstNI CAGNNNCTG 1 cut(s) 308
PsuI RGATCY 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 2 cut(s) 293, 674
RsaNI GTAC 2 cut(s) 292, 673
SacI GAGCTC 2 cut(s) 193, 962
SaqAI TTAA 3 cut(s) 227, 296, 758
SatI GCNGC 3 cut(s) 306, 309, 524
Sau3AI GATC 5 cut(s) 75, 103, 153, 628, 703
Sau96I GGNCC 2 cut(s) 239, 790
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 879
SduI GDGCHC 2 cut(s) 193, 962
Sfr274I CTCGAG 1 cut(s) 635
SlaI CTCGAG 1 cut(s) 635
SmlI CTYRAG 2 cut(s) 635, 785
SmoI CTYRAG 2 cut(s) 635, 785
Sse9I AATT 7 cut(s) 167, 180, 203, 297, 570, 723, 797
SspMI CTAG 1 cut(s) 425
SstI GAGCTC 2 cut(s) 193, 962
StyD4I CCNGG 1 cut(s) 877
TaaI ACNGT 2 cut(s) 412, 433
TaiI ACGT 1 cut(s) 591
TaqI TCGA 4 cut(s) 29, 74, 627, 636
TasI AATT 7 cut(s) 167, 180, 203, 297, 570, 723, 797
TfiI GAWTC 3 cut(s) 196, 262, 965
Tru1I TTAA 3 cut(s) 227, 296, 758
Tru9I TTAA 3 cut(s) 227, 296, 758
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 3 cut(s) 305, 308, 523
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 5 cut(s) 159, 353, 453, 584, 790
TspGWI ACGGA 1 cut(s) 866
XapI RAATTY 1 cut(s) 167
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XhoI CTCGAG 1 cut(s) 635
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.