Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017347

Physical Location & Seq

Genomic Coordinates Reverse (-)

33267914 .. 33268749

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g42810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCTGTTCACCGTCTTTGGGTCCAAAAGTCATGATCATGCTTACTTTTATTTTTCTGCATTTTCAGATGATATGGTTCAGCCCCATCAACCTCAGTGGCTTGGTAACGTGTTTGATGGAATGACTGAACTGTCATTTGTTGCGTGCAATGCTATGATTGATGGGTTTGGGAAGAATGGGGACATGTGTGGTGCTGTTTTGATATTTGAAATGATGCTAGAGAGGGATTGTTTGAGTAGTGCTAGGAATGGTTTCGAGGCAGATCAGGACAATTCAAAGAAACAACATGCATTTCATTTCAAGCTTGATGCTTCTGTGTTGGGGCTCTTTTGGGTTCTTGTAAGATTAATTCCTGGGACCACTGAGCTGGGAAATGAAGTTGGAAATAAATTTGGATGGTACCTGGCTTTGTCAAACATTATTGCTTGGAGTACCAGAGGTGGGGTCATGCATTTATATGTTGCTGCTGGCAATGGTACCTGCTGGAATTCACAATTAGGGTATGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

171

Amino Acids

18.92

Weight (kDa)

5.16

Isoelectric Point (pI)

28.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42810
malus_domestica	MD03G1191300.v1.1 MD05G1204200.v1.1 MD06G1056400.v1.1 MD08G1090200.v1.1 MD10G1039300.v1.1 MD16G1198600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259831
rosa_multiflora	Rmu_co8522155.1_g000001 Rmu_sc0003664.1_g000015 Rmu_sc0004188.1_g000005 Rmu_sc0009049.1_g000003
rosa_samantha	Rh6AG107300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	488
Acc65I	GGTACC	2 cut(s)	399, 476
AccB1I	GGYRCC	2 cut(s)	399, 476
AcsI	RAATTY	2 cut(s)	389, 487
AfaI	GTAC	3 cut(s)	401, 433, 478
AfiI	CCNNNNNNNGG	2 cut(s)	18, 441
AflIII	ACRYGT	2 cut(s)	108, 183
AgsI	TTSAA	3 cut(s)	209, 276, 301
AjnI	CCWGG	2 cut(s)	352, 402
AluBI	AGCT	2 cut(s)	304, 367
AluI	AGCT	2 cut(s)	304, 367
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	2 cut(s)	389, 487
AseI	ATTAAT	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	251
Asp718I	GGTACC	2 cut(s)	399, 476
AspS9I	GGNCC	2 cut(s)	21, 357
AvaII	GGWCC	2 cut(s)	21, 357
BanI	GGYRCC	2 cut(s)	399, 476
BanII	GRGCYC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	4 cut(s)	93, 110, 155, 390
BciT130I	CCWGG	2 cut(s)	354, 404
BclI	TGATCA	1 cut(s)	34
BfaI	CTAG	2 cut(s)	218, 243
BfuAI	ACCTGC	1 cut(s)	488
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
Bme1390I	CCNGG	2 cut(s)	354, 404
Bme18I	GGWCC	2 cut(s)	21, 357
BmgT120I	GGNCC	2 cut(s)	21, 357
BmiI	GGNNCC	4 cut(s)	22, 358, 401, 478
BmrFI	CCNGG	2 cut(s)	354, 404
BmsI	GCATC	2 cut(s)	204, 298
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 441
Bse3DI	GCAATG	2 cut(s)	154, 478
BseBI	CCWGG	2 cut(s)	354, 404
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	2 cut(s)	18, 441
BseMI	GCAATG	2 cut(s)	154, 478
BseMII	CTCAG	2 cut(s)	107, 354
BseXI	GCAGC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	367
BshNI	GGYRCC	2 cut(s)	399, 476
BslFI	GGGAC	2 cut(s)	194, 370
BslI	CCNNNNNNNGG	2 cut(s)	18, 441
BsmFI	GGGAC	2 cut(s)	194, 370
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	34, 262
BspCNI	CTCAG	2 cut(s)	106, 355
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	4 cut(s)	22, 358, 401, 478
BspMI	ACCTGC	1 cut(s)	488
BspT107I	GGYRCC	2 cut(s)	399, 476
BsrDI	GCAATG	2 cut(s)	154, 478
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	2 cut(s)	34, 262
Bst2UI	CCWGG	2 cut(s)	354, 404
Bst4CI	ACNGT	2 cut(s)	13, 132
BstC8I	GCNNGC	2 cut(s)	145, 469
BstDEI	CTNAG	2 cut(s)	93, 363
BstF5I	GGATG	1 cut(s)	401
BstKTI	GATC	2 cut(s)	37, 265
BstMBI	GATC	2 cut(s)	34, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	2 cut(s)	354, 404
BstNSI	RCATGY	2 cut(s)	187, 290
BstSCI	CCNGG	2 cut(s)	352, 402
BstV1I	GCAGC	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	401
BtsIMutI	CAGTG	2 cut(s)	101, 360
BveI	ACCTGC	1 cut(s)	488
Cac8I	GCNNGC	2 cut(s)	145, 469
CciI	TCATGA	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	21, 357
Csp6I	GTAC	3 cut(s)	400, 432, 477
CspCI	CAANNNNNGTGG	2 cut(s)	77, 112
CviAII	CATG	5 cut(s)	32, 38, 184, 287, 448
CviJI	RGCY	6 cut(s)	82, 100, 304, 325, 367, 407
CviKI_1	RGCY	6 cut(s)	82, 100, 304, 325, 367, 407
CviQI	GTAC	3 cut(s)	400, 432, 477
DdeI	CTNAG	2 cut(s)	93, 363
DpnI	GATC	2 cut(s)	36, 264
DpnII	GATC	2 cut(s)	34, 262
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	21, 357
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	352, 402
EcoT22I	ATGCAT	2 cut(s)	292, 453
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	5 cut(s)	35, 41, 187, 290, 451
FaqI	GGGAC	2 cut(s)	194, 370
FatI	CATG	5 cut(s)	31, 37, 183, 286, 447
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	2 cut(s)	218, 243
GluI	GCNGC	1 cut(s)	465
GsaI	CCCAGC	1 cut(s)	371
Hin1II	CATG	5 cut(s)	35, 41, 187, 290, 451
HindIII	AAGCTT	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	32, 266
Hpy8I	GTNNAC	1 cut(s)	9
HpyCH4III	ACNGT	2 cut(s)	13, 132
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	4 cut(s)	59, 147, 290, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	93, 363
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	5 cut(s)	35, 41, 187, 290, 451
KpnI	GGTACC	2 cut(s)	403, 480
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	34, 262
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	2 cut(s)	204, 298
MaeI	CTAG	2 cut(s)	218, 243
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	36, 264
MboI	GATC	2 cut(s)	34, 262
MboII	GAAGA	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	5 cut(s)	271, 348, 389, 487, 494
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	4 cut(s)	102, 216, 250, 431
Mph1103I	ATGCAT	2 cut(s)	292, 453
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	2 cut(s)	36, 456
MspR9I	CCNGG	2 cut(s)	354, 404
MvaI	CCWGG	2 cut(s)	354, 404
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	2 cut(s)	34, 262
NlaIII	CATG	5 cut(s)	35, 41, 187, 290, 451
NlaIV	GGNNCC	4 cut(s)	22, 358, 401, 478
NsiI	ATGCAT	2 cut(s)	292, 453
NspI	RCATGY	2 cut(s)	187, 290
PagI	TCATGA	1 cut(s)	31
PciI	ACATGT	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	466
PscI	ACATGT	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	352, 402
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	352, 402
PspN4I	GGNNCC	4 cut(s)	22, 358, 401, 478
PspPI	GGNCC	2 cut(s)	21, 357
RsaI	GTAC	3 cut(s)	401, 433, 478
RsaNI	GTAC	3 cut(s)	400, 432, 477
RseI	CAYNNNNRTG	2 cut(s)	36, 456
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	2 cut(s)	34, 262
Sau96I	GGNCC	2 cut(s)	21, 357
ScrFI	CCNGG	2 cut(s)	354, 404
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	7 cut(s)	94, 111, 306, 369, 405, 442, 482
SfaNI	GCATC	2 cut(s)	204, 298
SinI	GGWCC	2 cut(s)	21, 357
SmiMI	CAYNNNNRTG	2 cut(s)	36, 456
Sse9I	AATT	5 cut(s)	271, 348, 389, 487, 494
SspMI	CTAG	2 cut(s)	218, 243
StyD4I	CCNGG	2 cut(s)	352, 402
TaaI	ACNGT	2 cut(s)	13, 132
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	255
TasI	AATT	5 cut(s)	271, 348, 389, 487, 494
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	2 cut(s)	101, 367
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	284, 390
TspRI	CASTG	2 cut(s)	101, 367
VpaK11BI	GGWCC	2 cut(s)	21, 357
VspI	ATTAAT	1 cut(s)	347
XapI	RAATTY	2 cut(s)	389, 487
XceI	RCATGY	2 cut(s)	187, 290
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	2 cut(s)	218, 243
Zsp2I	ATGCAT	2 cut(s)	292, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.