Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0017347

Physical Location & Seq

Genomic Coordinates Forward (+)

8508302 .. 8508643

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1056400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATTTATGGGTTTGGGAATAATGGGGATATGGGTTATGCTGTTTTCCTATTTGAAAGCATGGTGGAAATGGACGTGGTTTCATGGACAAGCATTATAAATGGGTTTGGGAGAAATGGGTGTTTTAGTGAGGGAATTCGGTTTTTTCTGATGATGATGAATCATGAGAATGTGATGGGTTGTTTTGTGAAGCCAAATGAAGCTACTTATGTTAGTGTGCTTTCTTCCTGTGCTAATTTGGGTAGGTGGGGATCTATTTACTGGGGGAAGCAAATACATGGGCATGGATCTGAATCCGGTGTCATCGAAGCTTTTGCTCTCAAGCCAGATGCCGGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

114

Amino Acids

12.42

Weight (kDa)

5.15

Isoelectric Point (pI)

19.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	25 - 79	5.3e-07	PPR repeat family
PPR	PF01535	27 - 54	4.9e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42810
malus_domestica	MD03G1191300.v1.1 MD05G1204200.v1.1 MD06G1056400.v1.1 MD08G1090200.v1.1 MD10G1039300.v1.1 MD16G1198600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259831
rosa_multiflora	Rmu_co8522155.1_g000001 Rmu_sc0003664.1_g000015 Rmu_sc0004188.1_g000005 Rmu_sc0009049.1_g000003
rosa_samantha	Rh6AG107300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AclWI	GGATC	2 cut(s)	259, 295
AcsI	RAATTY	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	1 cut(s)	56
AjiI	CACGTC	1 cut(s)	76
AluBI	AGCT	2 cut(s)	203, 311
AluI	AGCT	2 cut(s)	203, 311
AlwI	GGATC	2 cut(s)	259, 295
ApoI	RAATTY	1 cut(s)	135
BccI	CCATC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BmgBI	CACGTC	1 cut(s)	76
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	305
BsaBI	GATNNNNATC	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	292
BseJI	GATNNNNATC	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	297, 333
BslI	CCNNNNNNNGG	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	251, 287
BspHI	TCATGA	1 cut(s)	163
BspPI	GGATC	2 cut(s)	259, 295
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	332
BssMI	GATC	2 cut(s)	251, 287
BstKTI	GATC	2 cut(s)	254, 290
BstMBI	GATC	2 cut(s)	251, 287
BstX2I	RGATCY	2 cut(s)	251, 287
BstYI	RGATCY	2 cut(s)	251, 287
BtrI	CACGTC	1 cut(s)	76
CciI	TCATGA	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	332
CviAII	CATG	5 cut(s)	61, 84, 164, 278, 284
CviJI	RGCY	4 cut(s)	193, 203, 311, 325
CviKI_1	RGCY	4 cut(s)	193, 203, 311, 325
DpnI	GATC	2 cut(s)	253, 289
DpnII	GATC	2 cut(s)	251, 287
EcoRI	GAATTC	1 cut(s)	135
FaeI	CATG	5 cut(s)	64, 87, 167, 281, 287
FatI	CATG	5 cut(s)	60, 83, 163, 277, 283
HapII	CCGG	2 cut(s)	297, 333
Hin1II	CATG	5 cut(s)	64, 87, 167, 281, 287
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	2 cut(s)	160, 293
HpaII	CCGG	2 cut(s)	297, 333
Hpy188I	TCNGA	2 cut(s)	150, 292
Hpy188III	TCNNGA	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	5 cut(s)	64, 87, 167, 281, 287
Kzo9I	GATC	2 cut(s)	251, 287
LpnPI	CCDG	3 cut(s)	241, 247, 310
LweI	GCATC	1 cut(s)	319
MaeII	ACGT	1 cut(s)	75
MalI	GATC	2 cut(s)	253, 289
MboI	GATC	2 cut(s)	251, 287
MboII	GAAGA	1 cut(s)	216
MflI	RGATCY	2 cut(s)	251, 287
MluCI	AATT	2 cut(s)	135, 235
MnlI	CCTC	1 cut(s)	124
MslI	CAYNNNNRTG	2 cut(s)	168, 282
MspI	CCGG	2 cut(s)	297, 333
NdeII	GATC	2 cut(s)	251, 287
NlaIII	CATG	5 cut(s)	64, 87, 167, 281, 287
PagI	TCATGA	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	160, 293
PsiI	TTATAA	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	251, 287
RseI	CAYNNNNRTG	2 cut(s)	168, 282
Sau3AI	GATC	2 cut(s)	251, 287
SetI	ASST	4 cut(s)	78, 205, 248, 313
SfaNI	GCATC	1 cut(s)	319
SmiMI	CAYNNNNRTG	2 cut(s)	168, 282
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	135, 235
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	306
TasI	AATT	2 cut(s)	135, 235
TfiI	GAWTC	2 cut(s)	160, 293
TspDTI	ATGAA	3 cut(s)	72, 173, 213
XapI	RAATTY	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.