Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003664.1

Orthogroup ID

OG0017347

Physical Location & Seq

Genomic Coordinates Forward (+)

49382 .. 49774

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003664.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggaagaaaaccctattccacaacactctgatcagagcccacctcggttttcggcgaagcccacaaggctcttcttctcttcacccacatgctttcccaacccaacagccacaccttccctccgctcgtcaaagccgtcgccggcggcggtggctagcagtgttccggcacagcccttcgcgcccaagctgcgaaacgcggcgtttggggtgacccgtttgtatgctggttttggtgaagtgtgcgatgcacgtaaggtgttcgatgaaatgactgaaccgtgtgtggttgctgtcaatgccttgagtgatgggtttgggaagaatggggacatgggtggtgctgtttcgctattcgaaagtatggcagagagggacgagtgggtttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

130

Amino Acids

14.0

Weight (kDa)

5.34

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42810
malus_domestica	MD03G1191300.v1.1 MD05G1204200.v1.1 MD06G1056400.v1.1 MD08G1090200.v1.1 MD10G1039300.v1.1 MD16G1198600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259831
rosa_multiflora	Rmu_co8522155.1_g000001 Rmu_sc0003664.1_g000015 Rmu_sc0004188.1_g000005 Rmu_sc0009049.1_g000003
rosa_samantha	Rh6AG107300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	126
AccII	CGCG	2 cut(s)	182, 200
AciI	CCGC	4 cut(s)	124, 146, 149, 200
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	184
AsuHPI	GGTGA	3 cut(s)	75, 223, 248
AsuII	TTCGAA	1 cut(s)	357
AsuNHI	GCTAGC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	31
BfaI	CTAG	1 cut(s)	156
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	3 cut(s)	147, 191, 201
BlsI	GCNGC	3 cut(s)	148, 192, 202
BmsI	GCATC	1 cut(s)	238
BmtI	GCTAGC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
Bpu14I	TTCGAA	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	325
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bse118I	RCCGGY	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	177
Bsh1236I	CGCG	2 cut(s)	182, 200
BsiSI	CCGG	2 cut(s)	143, 167
BslFI	GGGAC	2 cut(s)	344, 389
BsmFI	GGGAC	2 cut(s)	344, 389
Bsp119I	TTCGAA	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	4 cut(s)	124, 146, 149, 200
BspFNI	CGCG	2 cut(s)	182, 200
BspOI	GCTAGC	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	357
BsrBI	CCGCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	282
Bst6I	CTCTTC	2 cut(s)	77, 85
BstBAI	YACGTR	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	144, 157
BstEII	GGTNACC	1 cut(s)	211
BstFNI	CGCG	2 cut(s)	182, 200
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 152, 181, 190, 299
BstNSI	RCATGY	1 cut(s)	93
BstPI	GGTNACC	1 cut(s)	211
BstUI	CGCG	2 cut(s)	182, 200
BstV1I	GCAGC	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	261
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	144, 157
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	142
CviAII	CATG	2 cut(s)	90, 334
CviJI	RGCY	8 cut(s)	39, 61, 70, 110, 136, 155, 175, 190
CviKI_1	RGCY	8 cut(s)	39, 61, 70, 110, 136, 155, 175, 190
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	77, 85
EarI	CTCTTC	2 cut(s)	77, 85
Eco24I	GRGCYC	1 cut(s)	41
Eco91I	GGTNACC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	2 cut(s)	93, 337
FaiI	YATR	4 cut(s)	91, 225, 335, 365
FaqI	GGGAC	2 cut(s)	344, 389
FatI	CATG	2 cut(s)	89, 333
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	147, 191, 201
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	147, 191, 201
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	3 cut(s)	147, 191, 201
HapII	CCGG	2 cut(s)	143, 167
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	2 cut(s)	93, 337
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HpaII	CCGG	2 cut(s)	143, 167
HphI	GGTGA	3 cut(s)	75, 223, 248
Hpy188I	TCNGA	2 cut(s)	31, 36
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	126, 187
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 152, 181, 190, 299
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	93, 337
HspAI	GCGC	1 cut(s)	182
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	77
LpnPI	CCDG	3 cut(s)	156, 180, 213
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	33
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	1 cut(s)	31
MboII	GAAGA	5 cut(s)	17, 64, 67, 72, 334
MhlI	GDGCHC	1 cut(s)	41
MnlI	CCTC	3 cut(s)	54, 131, 366
MreI	CGCCGGCG	1 cut(s)	142
MroNI	GCCGGC	1 cut(s)	142
MslI	CAYNNNNRTG	1 cut(s)	88
MspI	CCGG	2 cut(s)	143, 167
MvnI	CGCG	2 cut(s)	182, 200
MwoI	GCNNNNNNNGC	5 cut(s)	67, 152, 181, 190, 299
NaeI	GCCGGC	1 cut(s)	144
NdeII	GATC	1 cut(s)	31
NgoMIV	GCCGGC	1 cut(s)	142
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	93, 337
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	93
NspV	TTCGAA	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PdiI	GCCGGC	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	148, 192, 202
Ppu21I	YACGTR	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	88
SapI	GCTCTTC	1 cut(s)	77
SatI	GCNGC	3 cut(s)	147, 191, 201
Sau3AI	GATC	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	5 cut(s)	46, 118, 192, 256, 261
SfaNI	GCATC	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	357
SgrAI	CRCCGGYG	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
SsiI	CCGC	4 cut(s)	124, 146, 149, 200
SspMI	CTAG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	282
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	264, 357
TauI	GCSGC	2 cut(s)	149, 203
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	166
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.