Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009049.1

Orthogroup ID

OG0017347

Physical Location & Seq

Genomic Coordinates Forward (+)

5747 .. 6034

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009049.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgattactgggtttttgcagaatggtgatgttgtgagtgcagttgagtttttcgagagaatgccacagcgggatggagcttctgttagtgcacttgtgtcggggcttattcaaaacggcgagctgggtgaagctgcgaggattgttgttcaatgtggggatgggggtgagggtgtggaagatttggtgcatgcttataatacattgattgctggttatggtcagagaggaagggtggaagaagctcggcgcatttttgatcaaagcccattttgtcatatgatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

95

Amino Acids

10.26

Weight (kDa)

4.66

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42810
malus_domestica	MD03G1191300.v1.1 MD05G1204200.v1.1 MD06G1056400.v1.1 MD08G1090200.v1.1 MD10G1039300.v1.1 MD16G1198600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259831
rosa_multiflora	Rmu_co8522155.1_g000001 Rmu_sc0003664.1_g000015 Rmu_sc0004188.1_g000005 Rmu_sc0009049.1_g000003
rosa_samantha	Rh6AG107300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AciI	CCGC	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	113, 152
AluBI	AGCT	4 cut(s)	80, 124, 134, 245
AluI	AGCT	4 cut(s)	80, 124, 134, 245
Alw21I	GWGCWC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	90
ApaLI	GTGCAC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	252
AsuHPI	GGTGA	3 cut(s)	38, 140, 179
BaeGI	GKGCMC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	2 cut(s)	68, 155
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BclI	TGATCA	1 cut(s)	259
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse1I	ACTGG	1 cut(s)	13
BseGI	GGATG	2 cut(s)	79, 166
BseNI	ACTGG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	1 cut(s)	259
BstC8I	GCNNGC	2 cut(s)	122, 192
BstF5I	GGATG	2 cut(s)	79, 166
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	194
BstSLI	GKGCMC	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	79, 166
Cac8I	GCNNGC	2 cut(s)	122, 192
CfoI	GCGC	1 cut(s)	252
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	6 cut(s)	80, 106, 124, 134, 245, 267
CviKI_1	RGCY	6 cut(s)	80, 106, 124, 134, 245, 267
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
FaeI	CATG	1 cut(s)	194
FaiI	YATR	6 cut(s)	192, 198, 219, 279, 281, 286
FatI	CATG	1 cut(s)	190
FauI	CCCGC	1 cut(s)	63
FauNDI	CATATG	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	2 cut(s)	86, 173
Fsp4HI	GCNGC	1 cut(s)	135
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HphI	GGTGA	3 cut(s)	38, 140, 179
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	225
HpyCH4V	TGCA	4 cut(s)	19, 41, 92, 190
Hsp92II	CATG	1 cut(s)	194
HspAI	GCGC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	2 cut(s)	110, 198
Lsp1109I	GCAGC	1 cut(s)	121
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	191, 251
MhlI	GDGCHC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	132, 163, 221
MspA1I	CMGCKG	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	66
NdeI	CATATG	1 cut(s)	279
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	194
NmeAIII	GCCGAG	1 cut(s)	226
NspI	RCATGY	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	194
PctI	GAATGC	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	136
PsiI	TTATAA	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	124
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	4 cut(s)	82, 126, 136, 247
SphI	GCATGC	1 cut(s)	194
SsiI	CCGC	1 cut(s)	70
TaqI	TCGA	1 cut(s)	54
TseI	GCWGC	1 cut(s)	134
VneI	GTGCAC	1 cut(s)	90
XceI	RCATGY	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.