Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0017347

Physical Location & Seq

Genomic Coordinates Reverse (-)

26283445 .. 26284259

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1191300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTGCGATGCACATAAGGTGTTTGAGGAAATGTCTGAACCATGTGTGGTTGCGTGGAATGCGATGATTGATGGGTTTGGGAAGAATGGGGAAATGGGTTATGCTGTTTTGCTATTTGAAAGCAAGCCGAAAAGGGACGTGGTTTCATGGACAAGCGTTATAAGCGGGTTTGGGAGAAATGGGTGTGGTTGTGCTGTTTTGAGTCTCTTTGCTTCCGTAAATTATGTCTCTGGTTTCGGTCGAAATGGGTGCTCTAAGAACGTCATTTCTTGCATTGGATGCATGATGTGGTTACTCTGCAATCAAGAGAAAATCAGAGGCTGGAAGGGACATTGTGTATCTAGTAAATGCAATTGCATTCCACCCCGTCTCTTTTCAAGTTTGAGCTGTATTTCAGTCTTGTTGCTGTGTTCGTCCGTATACTGGTTATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

146

Amino Acids

15.93

Weight (kDa)

8.43

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42810
malus_domestica	MD03G1191300.v1.1 MD05G1204200.v1.1 MD06G1056400.v1.1 MD08G1090200.v1.1 MD10G1039300.v1.1 MD16G1198600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259831
rosa_multiflora	Rmu_co8522155.1_g000001 Rmu_sc0003664.1_g000015 Rmu_sc0004188.1_g000005 Rmu_sc0009049.1_g000003
rosa_samantha	Rh6AG107300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	423
AgsI	TTSAA	2 cut(s)	119, 378
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	1 cut(s)	387
AluI	AGCT	1 cut(s)	387
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	3 cut(s)	209, 232, 374
AlwNI	CAGNNNCTG	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	254
BccI	CCATC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BcoDI	GTCTC	3 cut(s)	209, 232, 374
BfaI	CTAG	1 cut(s)	342
BmgBI	CACGTC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	428
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	254
BslFI	GGGAC	2 cut(s)	149, 342
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	3 cut(s)	209, 232, 374
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	149, 342
BsmI	GAATGC	2 cut(s)	64, 357
Bsp1286I	GDGCHC	1 cut(s)	254
BspACI	CCGC	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	428
BssNAI	GTATAC	1 cut(s)	421
Bst1107I	GTATAC	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	284
BstMAI	GTCTC	3 cut(s)	209, 232, 374
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 162, 279
BstZ17I	GTATAC	1 cut(s)	421
BtgZI	GCGATG	2 cut(s)	21, 77
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	321
CviAII	CATG	4 cut(s)	42, 147, 283, 432
CviJI	RGCY	3 cut(s)	127, 321, 387
CviKI_1	RGCY	3 cut(s)	127, 321, 387
DdeI	CTNAG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	284
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	4 cut(s)	45, 150, 286, 435
FaiI	YATR	9 cut(s)	15, 43, 102, 148, 161, 225, 284, 421, 433
FaqI	GGGAC	2 cut(s)	149, 342
FatI	CATG	4 cut(s)	41, 146, 282, 431
FauI	CCCGC	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	420
FokI	GGATG	1 cut(s)	291
FspBI	CTAG	1 cut(s)	342
Hin1II	CATG	4 cut(s)	45, 150, 286, 435
HinfI	GANTC	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	37, 317
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	1 cut(s)	319
HpyCH4IV	ACGT	2 cut(s)	138, 261
HpyCH4V	TGCA	6 cut(s)	11, 273, 282, 300, 351, 357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 162, 279
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	138, 261
Hsp92II	CATG	4 cut(s)	45, 150, 286, 435
LpnPI	CCDG	3 cut(s)	216, 307, 409
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	138, 261
MaeIII	GTNAC	1 cut(s)	291
MboII	GAAGA	1 cut(s)	94
MfeI	CAATTG	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	2 cut(s)	220, 352
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	2 cut(s)	19, 311
Mph1103I	ATGCAT	1 cut(s)	284
MunI	CAATTG	1 cut(s)	352
Mva1269I	GAATGC	2 cut(s)	64, 357
MwoI	GCNNNNNNNGC	3 cut(s)	59, 162, 279
NlaIII	CATG	4 cut(s)	45, 150, 286, 435
NsiI	ATGCAT	1 cut(s)	284
PctI	GAATGC	2 cut(s)	64, 357
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	321
SchI	GAGTC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	4 cut(s)	21, 141, 264, 389
SfaNI	GCATC	1 cut(s)	269
Sse9I	AATT	2 cut(s)	220, 352
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	342
TaiI	ACGT	2 cut(s)	141, 264
TaqI	TCGA	1 cut(s)	241
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	2 cut(s)	220, 352
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	2 cut(s)	205, 406
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.