Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0017347

Physical Location & Seq

Genomic Coordinates Forward (+)

5173343 .. 5173639

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1039300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCTGAACCATGTATGGTTGCGTGGAATGCGATGATTGATGGGTTTAGGAAGAATGGGGAAATGGGTTATGCTATTTTGTTATTTGAAAGCATGCCGAAAAGGGACGTGGTTTCATGGACAAGCGTTATAAGCGGGTTTGGGAGAAATGGGTGTGGTTGTGCTGTTTTGAGTCTCTTTGCTTCCGTAAATTATGTCTCTAGTTTCGGTCGGAATGGGTGCTCTGAGAACGTCATTTCTTGCATTGGATGCATGGTGTGGTTACTTTGCAATCAAGAGGTAGGATTTGTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

99

Amino Acids

10.68

Weight (kDa)

6.12

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 37	2.4e-06	PPR repeat family
PPR	PF01535	7 - 36	9.5e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42810
malus_domestica	MD03G1191300.v1.1 MD05G1204200.v1.1 MD06G1056400.v1.1 MD08G1090200.v1.1 MD10G1039300.v1.1 MD16G1198600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259831
rosa_multiflora	Rmu_co8522155.1_g000001 Rmu_sc0003664.1_g000015 Rmu_sc0004188.1_g000005 Rmu_sc0009049.1_g000003
rosa_samantha	Rh6AG107300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
AciI	CCGC	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	89
AjiI	CACGTC	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	179, 202
Bbv12I	GWGCWC	1 cut(s)	224
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	179, 202
BfaI	CTAG	1 cut(s)	201
BmgBI	CACGTC	1 cut(s)	109
BmsI	GCATC	1 cut(s)	239
BseGI	GGATG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	211
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	179, 202
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	224
BspACI	CCGC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	254
BstMAI	GTCTC	2 cut(s)	179, 202
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 132, 249
BstNSI	RCATGY	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	95
CviAII	CATG	4 cut(s)	12, 94, 117, 253
DdeI	CTNAG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	254
FaeI	CATG	4 cut(s)	15, 97, 120, 256
FaiI	YATR	8 cut(s)	13, 17, 72, 95, 118, 131, 195, 254
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	4 cut(s)	11, 93, 116, 252
FauI	CCCGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	261
FspBI	CTAG	1 cut(s)	201
Hin1II	CATG	4 cut(s)	15, 97, 120, 256
HinfI	GANTC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	7, 213, 226
Hpy188III	TCNNGA	1 cut(s)	275
HpyCH4IV	ACGT	2 cut(s)	108, 231
HpyCH4V	TGCA	3 cut(s)	243, 252, 270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 132, 249
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	2 cut(s)	108, 231
Hsp92II	CATG	4 cut(s)	15, 97, 120, 256
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	108, 231
MaeIII	GTNAC	1 cut(s)	261
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	1 cut(s)	271
Mph1103I	ATGCAT	1 cut(s)	254
MseI	TTAA	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	29, 132, 249
NlaIII	CATG	4 cut(s)	15, 97, 120, 256
NsiI	ATGCAT	1 cut(s)	254
NspI	RCATGY	1 cut(s)	97
PaeI	GCATGC	1 cut(s)	97
PctI	GAATGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PsiI	TTATAA	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	291
SchI	GAGTC	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	3 cut(s)	111, 234, 282
SfaNI	GCATC	1 cut(s)	239
SphI	GCATGC	1 cut(s)	97
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	201
TaiI	ACGT	2 cut(s)	111, 234
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	175
XceI	RCATGY	1 cut(s)	97
XspI	CTAG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.