Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0017347

Physical Location & Seq

Genomic Coordinates Forward (+)

7475364 .. 7475591

Gene Structure 228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1090200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTCTGAACCATGTGTGGTTGCGTGGAATGCGATGATTGATGGGTTTGGGAAGAATGGGGAAATGGGTTATGCTATTTTGTTATTTGAAAGCATGCCGGAAAGGGACGTGGTTTCATGGACAAGCGTTATAAGCGGGTTTGGGAGAAATGGGTATGGTTGTGCTGTTTTTGAGTCTCTTTGCTTCCGTAAATTATGTCTCTGGTTTCAATTGGAATGGGTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

76

Amino Acids

8.49

Weight (kDa)

4.6

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 36	9.1e-08	PPR repeat family
PPR	PF01535	7 - 36	5.3e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42810
malus_domestica	MD03G1191300.v1.1 MD05G1204200.v1.1 MD06G1056400.v1.1 MD08G1090200.v1.1 MD10G1039300.v1.1 MD16G1198600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259831
rosa_multiflora	Rmu_co8522155.1_g000001 Rmu_sc0003664.1_g000015 Rmu_sc0004188.1_g000005 Rmu_sc0009049.1_g000003
rosa_samantha	Rh6AG107300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
AciI	CCGC	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	89, 209
AjiI	CACGTC	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	180, 203
Bbv12I	GWGCWC	1 cut(s)	225
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	180, 203
BmgBI	CACGTC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	180, 203
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	95
BstMAI	GTCTC	2 cut(s)	180, 203
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 132
BstNSI	RCATGY	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	95
CviAII	CATG	3 cut(s)	12, 94, 117
FaeI	CATG	3 cut(s)	15, 97, 120
FaiI	YATR	7 cut(s)	13, 72, 95, 118, 131, 156, 196
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	3 cut(s)	11, 93, 116
FauI	CCCGC	1 cut(s)	128
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	3 cut(s)	15, 97, 120
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	7, 227
HpyCH4IV	ACGT	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 132
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	15, 97, 120
LpnPI	CCDG	2 cut(s)	111, 187
MaeII	ACGT	1 cut(s)	108
MboII	GAAGA	1 cut(s)	64
MfeI	CAATTG	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	2 cut(s)	191, 209
MlyI	GAGTC	1 cut(s)	182
MspI	CCGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	29, 132
NlaIII	CATG	3 cut(s)	15, 97, 120
NspI	RCATGY	1 cut(s)	97
PaeI	GCATGC	1 cut(s)	97
PctI	GAATGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PsiI	TTATAA	1 cut(s)	131
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	1 cut(s)	111
SgeI	CNNG	9 cut(s)	24, 36, 106, 110, 121, 129, 135, 148, 214
SphI	GCATGC	1 cut(s)	97
Sse9I	AATT	2 cut(s)	191, 209
SsiI	CCGC	1 cut(s)	135
TaiI	ACGT	1 cut(s)	111
TasI	AATT	2 cut(s)	191, 209
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	176
XceI	RCATGY	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.