Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0017347

Physical Location & Seq

Genomic Coordinates Forward (+)

17905676 .. 17905939

Gene Structure 264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1198600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGATTGATGAGTTTGGGAAGAATGGGGATATGGGTTATGCTGTTTTACTATTTGAAAGCATGCTGGAAATGAATGTGGTTTCATGGACAAACGTTATAAATGGGTTTGGGAGAAATGGGTGTTTTAGCGAGGGAATTCGGTTTTTTCAGATGATGATGAATCATGAGAATGTGATGGGTTGTTTTGTGAAGCTAAACGAAGCTGCTTATGTTAGTGTGCCTTCTTCCTGTGCTAATTTTGGTGGGTGGGGATCTATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

88

Amino Acids

9.7

Weight (kDa)

4.59

Isoelectric Point (pI)

15.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	27 - 54	2.9e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42810
malus_domestica	MD03G1191300.v1.1 MD05G1204200.v1.1 MD06G1056400.v1.1 MD08G1090200.v1.1 MD10G1039300.v1.1 MD16G1198600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259831
rosa_multiflora	Rmu_co8522155.1_g000001 Rmu_sc0003664.1_g000015 Rmu_sc0004188.1_g000005 Rmu_sc0009049.1_g000003
rosa_samantha	Rh6AG107300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AclI	AACGTT	1 cut(s)	93
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	56
AluBI	AGCT	2 cut(s)	193, 203
AluI	AGCT	2 cut(s)	193, 203
AlwI	GGATC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	251
BspHI	TCATGA	1 cut(s)	163
BspPI	GGATC	1 cut(s)	259
BssMI	GATC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	62
CciI	TCATGA	1 cut(s)	163
CviAII	CATG	3 cut(s)	61, 84, 164
CviJI	RGCY	2 cut(s)	193, 203
CviKI_1	RGCY	2 cut(s)	193, 203
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	135
FaeI	CATG	3 cut(s)	64, 87, 167
FaiI	YATR	7 cut(s)	32, 39, 62, 85, 98, 165, 210
FatI	CATG	3 cut(s)	60, 83, 163
Fnu4HI	GCNGC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	64, 87, 167
HinfI	GANTC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	64, 87, 167
Kzo9I	GATC	1 cut(s)	251
LpnPI	CCDG	2 cut(s)	50, 241
Lsp1109I	GCAGC	1 cut(s)	190
MaeII	ACGT	1 cut(s)	93
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	2 cut(s)	31, 216
MflI	RGATCY	1 cut(s)	251
MluCI	AATT	2 cut(s)	135, 235
MnlI	CCTC	1 cut(s)	124
MslI	CAYNNNNRTG	1 cut(s)	168
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	3 cut(s)	64, 87, 167
NspI	RCATGY	1 cut(s)	64
PaeI	GCATGC	1 cut(s)	64
PagI	TCATGA	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	205
PsiI	TTATAA	1 cut(s)	98
Psp1406I	AACGTT	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	168
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	251
SetI	ASST	3 cut(s)	96, 195, 205
SgeI	CNNG	6 cut(s)	73, 77, 96, 142, 176, 240
SmiMI	CAYNNNNRTG	1 cut(s)	168
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	2 cut(s)	135, 235
TaiI	ACGT	1 cut(s)	96
TasI	AATT	2 cut(s)	135, 235
TfiI	GAWTC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	3 cut(s)	72, 86, 173
XapI	RAATTY	1 cut(s)	135
XceI	RCATGY	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.