Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8522155.1

Orthogroup ID

OG0017347

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 867

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8522155.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

aatggtgatgttgtgagtgcagttgagtttttcgagagaatgccacagcgggatggagcttctgttagtgcacttgtgtcggggcttattcaaaacggcgagctgggtgaagctgcgaggattgttgttcaatgtggggatgggggtgagggtgtggaagatttggtgcatgcttataatacattgattgctggttatggtcagagaggaagggtggaagaagctcggcgcatttttgatcaaagcccattttgtcatatgatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

88

Amino Acids

9.47

Weight (kDa)

4.66

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017347)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42810
malus_domestica	MD03G1191300.v1.1 MD05G1204200.v1.1 MD06G1056400.v1.1 MD08G1090200.v1.1 MD10G1039300.v1.1 MD16G1198600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0259831
rosa_multiflora	Rmu_co8522155.1_g000001 Rmu_sc0003664.1_g000015 Rmu_sc0004188.1_g000005 Rmu_sc0009049.1_g000003
rosa_samantha	Rh6AG107300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AciI	CCGC	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	92, 131
AluBI	AGCT	4 cut(s)	59, 103, 113, 224
AluI	AGCT	4 cut(s)	59, 103, 113, 224
Alw21I	GWGCWC	1 cut(s)	73
Alw44I	GTGCAC	1 cut(s)	69
ApaLI	GTGCAC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	231
AsuHPI	GGTGA	3 cut(s)	17, 119, 158
BaeGI	GKGCMC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	2 cut(s)	47, 134
BceAI	ACGGC	1 cut(s)	112
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BclI	TGATCA	1 cut(s)	238
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
BseGI	GGATG	2 cut(s)	58, 145
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	1 cut(s)	49
BssMI	GATC	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	101, 171
BstF5I	GGATG	2 cut(s)	58, 145
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstNSI	RCATGY	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	58, 145
Cac8I	GCNNGC	2 cut(s)	101, 171
CfoI	GCGC	1 cut(s)	231
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	6 cut(s)	59, 85, 103, 113, 224, 246
CviKI_1	RGCY	6 cut(s)	59, 85, 103, 113, 224, 246
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
FaeI	CATG	1 cut(s)	173
FaiI	YATR	6 cut(s)	171, 177, 198, 258, 260, 265
FatI	CATG	1 cut(s)	169
FauI	CCCGC	1 cut(s)	42
FauNDI	CATATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	2 cut(s)	65, 152
Fsp4HI	GCNGC	1 cut(s)	114
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	173
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HphI	GGTGA	3 cut(s)	17, 119, 158
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	20, 71, 169
Hsp92II	CATG	1 cut(s)	173
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	2 cut(s)	89, 177
Lsp1109I	GCAGC	1 cut(s)	100
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	2 cut(s)	170, 230
MhlI	GDGCHC	1 cut(s)	73
MnlI	CCTC	3 cut(s)	111, 142, 200
MspA1I	CMGCKG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	45
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	173
NmeAIII	GCCGAG	1 cut(s)	205
NspI	RCATGY	1 cut(s)	173
PaeI	GCATGC	1 cut(s)	173
PctI	GAATGC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	115
PsiI	TTATAA	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	103
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	4 cut(s)	61, 105, 115, 226
SphI	GCATGC	1 cut(s)	173
SsiI	CCGC	1 cut(s)	49
TaqI	TCGA	1 cut(s)	33
TseI	GCWGC	1 cut(s)	113
VneI	GTGCAC	1 cut(s)	69
XceI	RCATGY	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.