Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012643

Physical Location & Seq

Genomic Coordinates Forward (+)

33613591 .. 33619169

Gene Structure 5579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43430.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAACGACCTGCTTACGGATTCGTTTGTCAGTGAGGCAAGAGCTCAGCCTTCTGGAACAAATGATATTGAAATGGGAATTCCTCGTAGCATGTCTGATGCCGGAATGGATAGTTTCAATAAGCAGATCCAAGAGGTTGAGAAACAGGTGGAGAAACTATCCGGGCTTCTTAAAAAACTTAAGGATGCAAATGAGGAGTCAAAATCTGTTACAAAAGCATCTGCCATGAAAGCAATCAAAAAGCGGATGGAAAAAGATATTGATGAAGTGGGAAAGATTGCCCGTGGTGTCAAAGGAAAACTAGAAGGAATAAGCAAAGATAACTTAGCCAACCGACAGAAGCCTGGATGTGAGAAGGGAACGGGTGTTGACAGATCAAGGATGAACATGACAAATTCCTTGACGAAAAAGTTTAGGGAGATAATGATCGAGTTTCAGACTCTTAGACAAAGAATCCAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTCATTACAGTTACGGGAACTAGACCAGATGAAGAGACAATTGACAATTTAATAGAAACTGGAAATAGTGAGCAAATATTCCAGAAGGCAGTCCAAGAACAAGGACGGGGACAGGTACTAAATACTTTGGAAGAAATTCAAGAGAGGCATGACACTGTAAAAGAAATTGAGAAAAAGCTTCTCGACTTGCATCAGATCTACCTCGATATGGCAGTCTTGGTTGATGCTCAAGGAGAGGTTTTAGATAACATTGAAACTCAGGTTTCGAATACAGTTGATTATATGCAATCTGGGACAACTCAACTGCAAAATGCAAAGAAACTCCAGAAGAACTCCAGAAAATGGACGTGCATTGCCATCATGATTCTTTTAATTATAGTAGCTGTTGTAGTTGTTGGTGTCCTCAAACCATGGAAAAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

305

Amino Acids

34.33

Weight (kDa)

6.8

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	34 - 194	2.4e-51	Syntaxin
SNARE	PF05739	242 - 294	4.7e-15	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43430 FvH4_6g43430 FvH4_6g43430 FvH4_6g43430
malus_domestica	MD09G1106700.v1.1
prunus_persica	Prupe.3G218900_v2.0.a1 Prupe.3G218900_v2.0.a1
pyrus_communis	pycom09g02930 pycom17g09110
rosa_chinensis	RchiOBHm_Chr2g0159801
rosa_laevigata	RLG00000021182
rosa_multiflora	Rmu_sc0002508.1_g000006 Rmu_sc0016393.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090230
rosa_rugosa	Rorug02G0478700 Rorug02G0478800
rosa_samantha	Rh2BG558400 Rh2DG567500
rosa_wichuraiana	Rw2G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	831
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	3 cut(s)	78, 394, 624
AfaI	GTAC	1 cut(s)	606
AfiI	CCNNNNNNNGG	3 cut(s)	16, 697, 831
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	4 cut(s)	71, 118, 629, 743
AjiI	CACGTC	1 cut(s)	837
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	4 cut(s)	44, 667, 872, 912
AluI	AGCT	4 cut(s)	44, 667, 872, 912
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	909
ApoI	RAATTY	3 cut(s)	78, 394, 624
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
Asp700I	GAANNNNTTC	1 cut(s)	624
AsuC2I	CCSGG	1 cut(s)	163
AsuII	TTCGAA	1 cut(s)	755
BanII	GRGCYC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	478, 510
Bbv12I	GWGCWC	1 cut(s)	46
BccI	CCATC	2 cut(s)	241, 854
BciT130I	CCWGG	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	3 cut(s)	302, 510, 913
BfrI	CTTAAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	1 cut(s)	684
BisI	GCNGC	1 cut(s)	910
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	911
Bme1390I	CCNGG	2 cut(s)	163, 345
BmgBI	CACGTC	1 cut(s)	837
BmrFI	CCNGG	2 cut(s)	163, 345
BmsI	GCATC	5 cut(s)	88, 175, 227, 688, 703
BpmI	CTGGAG	2 cut(s)	797, 808
Bpu1102I	GCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	702
BpuMI	CCSGG	1 cut(s)	163
BsaBI	GATNNNNATC	2 cut(s)	425, 465
BsaJI	CCNNGG	2 cut(s)	283, 899
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 697, 831
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	840
Bse8I	GATNNNNATC	2 cut(s)	425, 465
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	283, 899
BseGI	GGATG	4 cut(s)	190, 252, 353, 387
BseJI	GATNNNNATC	2 cut(s)	425, 465
BseLI	CCNNNNNNNGG	3 cut(s)	16, 697, 831
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	2 cut(s)	59, 761
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	102, 162
BslFI	GGGAC	2 cut(s)	612, 796
BslI	CCNNNNNNNGG	3 cut(s)	16, 697, 831
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	2 cut(s)	612, 796
Bsp119I	TTCGAA	1 cut(s)	755
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	126, 374, 426, 684
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	899
BspACI	CCGC	1 cut(s)	244
BspCNI	CTCAG	2 cut(s)	58, 760
BspHI	TCATGA	1 cut(s)	849
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	755
BspTI	CTTAAG	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	840
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	283, 899
BssMI	GATC	4 cut(s)	126, 374, 426, 684
BssT1I	CCWWGG	1 cut(s)	899
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	3 cut(s)	499, 646, 763
Bst6I	CTCTTC	2 cut(s)	481, 516
BstAFI	CTTAAG	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	755
BstDEI	CTNAG	4 cut(s)	45, 325, 443, 747
BstDSI	CCRYGG	2 cut(s)	283, 899
BstF5I	GGATG	4 cut(s)	190, 252, 353, 387
BstKTI	GATC	4 cut(s)	129, 377, 429, 687
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	4 cut(s)	126, 374, 426, 684
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	161, 343
BstX2I	RGATCY	2 cut(s)	126, 684
BstYI	RGATCY	2 cut(s)	126, 684
BtgI	CCRYGG	2 cut(s)	283, 899
BtrI	CACGTC	1 cut(s)	837
BtsCI	GGATG	4 cut(s)	190, 252, 353, 387
BtsIMutI	CAGTG	2 cut(s)	37, 642
BveI	ACCTGC	1 cut(s)	18
CciI	TCATGA	1 cut(s)	849
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	6 cut(s)	91, 226, 388, 638, 850, 900
CviJI	RGCY	8 cut(s)	44, 49, 166, 329, 343, 667, 872, 912
CviKI_1	RGCY	8 cut(s)	44, 49, 166, 329, 343, 667, 872, 912
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	4 cut(s)	45, 325, 443, 747
DpnI	GATC	4 cut(s)	128, 376, 428, 686
DpnII	GATC	4 cut(s)	126, 374, 426, 684
Eam1104I	CTCTTC	2 cut(s)	481, 516
EarI	CTCTTC	2 cut(s)	481, 516
Ecl136II	GAGCTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	899
Eco24I	GRGCYC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	899
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	899
FaeI	CATG	6 cut(s)	94, 229, 391, 641, 853, 903
FaqI	GGGAC	2 cut(s)	612, 796
FatI	CATG	6 cut(s)	90, 225, 387, 637, 849, 899
Fnu4HI	GCNGC	1 cut(s)	910
FokI	GGATG	4 cut(s)	197, 259, 360, 394
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	910
FspBI	CTAG	3 cut(s)	302, 510, 913
GluI	GCNGC	1 cut(s)	910
GsuI	CTGGAG	2 cut(s)	797, 808
HapII	CCGG	2 cut(s)	102, 162
Hin1II	CATG	6 cut(s)	94, 229, 391, 641, 853, 903
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	6 cut(s)	20, 197, 439, 453, 489, 853
HpaII	CCGG	2 cut(s)	102, 162
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	97, 438, 684
Hpy188III	TCNNGA	8 cut(s)	54, 470, 571, 629, 671, 814, 825, 850
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	4 cut(s)	60, 299, 349, 568
HpyCH4III	ACNGT	3 cut(s)	499, 646, 763
HpyCH4IV	ACGT	1 cut(s)	836
HpyCH4V	TGCA	6 cut(s)	188, 679, 775, 796, 803, 840
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	4 cut(s)	45, 325, 443, 747
HpySE526I	ACGT	1 cut(s)	836
Hsp92II	CATG	6 cut(s)	94, 229, 391, 641, 853, 903
Kzo9I	GATC	4 cut(s)	126, 374, 426, 684
LweI	GCATC	5 cut(s)	88, 175, 227, 688, 703
MaeI	CTAG	3 cut(s)	302, 510, 913
MaeII	ACGT	1 cut(s)	836
MaeIII	GTNAC	2 cut(s)	208, 499
MalI	GATC	4 cut(s)	128, 376, 428, 686
MboI	GATC	4 cut(s)	126, 374, 426, 684
MboII	GAAGA	4 cut(s)	498, 533, 632, 829
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	2 cut(s)	126, 684
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	7 cut(s)	78, 394, 528, 535, 624, 654, 861
MlyI	GAGTC	3 cut(s)	206, 433, 498
MnlI	CCTC	9 cut(s)	28, 93, 127, 187, 466, 627, 701, 718, 902
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	4 cut(s)	171, 180, 539, 860
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	2 cut(s)	102, 162
MspR9I	CCNGG	2 cut(s)	163, 345
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	899
NdeII	GATC	4 cut(s)	126, 374, 426, 684
NlaIII	CATG	6 cut(s)	94, 229, 391, 641, 853, 903
NspI	RCATGY	1 cut(s)	94
NspV	TTCGAA	1 cut(s)	755
PagI	TCATGA	1 cut(s)	849
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	3 cut(s)	20, 453, 853
PflMI	CCANNNNNTGG	1 cut(s)	831
PkrI	GCNGC	1 cut(s)	911
PleI	GAGTC	3 cut(s)	205, 433, 497
PpsI	GAGTC	3 cut(s)	205, 433, 497
Psp124BI	GAGCTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	126, 684
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	4 cut(s)	171, 180, 539, 860
SatI	GCNGC	1 cut(s)	910
Sau3AI	GATC	4 cut(s)	126, 374, 426, 684
SchI	GAGTC	3 cut(s)	206, 433, 498
ScrFI	CCNGG	2 cut(s)	163, 345
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	5 cut(s)	88, 175, 227, 688, 703
SfuI	TTCGAA	1 cut(s)	755
SmlI	CTYRAG	2 cut(s)	179, 717
SmoI	CTYRAG	2 cut(s)	179, 717
Sse9I	AATT	7 cut(s)	78, 394, 528, 535, 624, 654, 861
SsiI	CCGC	1 cut(s)	244
SspI	AATATT	1 cut(s)	567
SspMI	CTAG	3 cut(s)	302, 510, 913
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	2 cut(s)	161, 343
StyI	CCWWGG	1 cut(s)	899
TaaI	ACNGT	3 cut(s)	499, 646, 763
TaiI	ACGT	1 cut(s)	839
TaqI	TCGA	4 cut(s)	429, 672, 693, 755
TasI	AATT	7 cut(s)	78, 394, 528, 535, 624, 654, 861
TfiI	GAWTC	3 cut(s)	20, 453, 853
Tru1I	TTAA	4 cut(s)	171, 180, 539, 860
Tru9I	TTAA	4 cut(s)	171, 180, 539, 860
TscAI	CASTG	2 cut(s)	37, 649
TseI	GCWGC	1 cut(s)	909
TspDTI	ATGAA	6 cut(s)	17, 242, 279, 398, 477, 534
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	37, 649
Van91I	CCANNNNNTGG	1 cut(s)	831
Vha464I	CTTAAG	1 cut(s)	179
XapI	RAATTY	3 cut(s)	78, 394, 624
XceI	RCATGY	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	3 cut(s)	302, 510, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.