Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0012643

Physical Location & Seq

Genomic Coordinates Reverse (-)

2135698 .. 2138071

Gene Structure 2374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02930.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGAAGGCCAGTTCCACATAGCTATTCCGATGCAGGGATGGACACTTTCAATAAGCAGATACAAGAGATTGAGAAACAGGTGGATAAGCTCTCCGGGCTTCTTAAAAAACTTAAGGATGCAAACGAGGAGTCGAAGTCTGTTACAAAAGCATCTGCCATGAAAGCAATCAAAAAGCGGATGGAAAAAGATATTGATGAAGTAGGAAAGATTGCACGTGGTGTCAAAGCGAAACTAGAAGCAATTAGCAAAGATAACTTAGCCAACCGACAAAAACCTGGATGTGAGAAGGGAACAGGTGTTGACAGATCGCGGATGAACATGACAAATTCATTGACAAAAAAGTTTAGGGAGATAATGATCGAGTTTCAGACCCTCAGACAACGAATCCAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTCATTACAGTTACAGGAACCAGACCAGATGAAGAGACAATTGACAACCTGATAGAAACTGGAAATAGTGAGCAAATATTCCAAAAGGCAGTTCAAGAACAGGGACGAGGACAGGTACTAAATACGTTGGAAGAAATTCAAGAGAGGCATGACACCGTTAAGGAAATTGAGAAAAAGCTACTTGACTTGCATCAGATCTACCTCGATATGGCAGTCTTGGTCGATGCTCAAGGAGAGATTTTAGACAATATCGAATCTCAGGTTACGAATGCAGTCGATCATGTTCAATCTGGGAACACTGCGCTTCAAAAAGCAAAGAAACTCCAGAAGAACTCCCGAAAATGGATGTGCATTGCAATCATTATTCTCTTAATAATAGTAGCTATTATAGTCGCTACCGTCCTCAAACCATGGAAAAGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

283

Amino Acids

31.95

Weight (kDa)

8.99

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43430 FvH4_6g43430 FvH4_6g43430 FvH4_6g43430
malus_domestica	MD09G1106700.v1.1
prunus_persica	Prupe.3G218900_v2.0.a1 Prupe.3G218900_v2.0.a1
pyrus_communis	pycom09g02930 pycom17g09110
rosa_chinensis	RchiOBHm_Chr2g0159801
rosa_laevigata	RLG00000021182
rosa_multiflora	Rmu_sc0002508.1_g000006 Rmu_sc0016393.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090230
rosa_rugosa	Rorug02G0478700 Rorug02G0478800
rosa_samantha	Rh2BG558400 Rh2DG567500
rosa_wichuraiana	Rw2G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	313
AciI	CCGC	2 cut(s)	178, 313
AcsI	RAATTY	2 cut(s)	328, 558
AcvI	CACGTG	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	3 cut(s)	36, 631, 765
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	5 cut(s)	52, 518, 563, 710, 731
AjnI	CCWGG	1 cut(s)	277
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AloI	GAACNNNNNNTCC	1 cut(s)	29
AluBI	AGCT	4 cut(s)	24, 91, 601, 806
AluI	AGCT	4 cut(s)	24, 91, 601, 806
Alw26I	GTCTC	1 cut(s)	452
AoxI	GGCC	1 cut(s)	8
ApoI	RAATTY	2 cut(s)	328, 558
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
Asp700I	GAANNNNTTC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	727
AsuC2I	CCSGG	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	412, 444
BbrPI	CACGTG	1 cut(s)	218
BccI	CCATC	2 cut(s)	34, 175
BciT130I	CCWGG	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	1 cut(s)	236
BfrI	CTTAAG	1 cut(s)	113
BglII	AGATCT	1 cut(s)	618
Bme1390I	CCNGG	2 cut(s)	97, 279
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	2 cut(s)	97, 279
BmsI	GCATC	5 cut(s)	22, 109, 161, 622, 637
BpmI	CTGGAG	1 cut(s)	731
BpuEI	CTTGAG	1 cut(s)	636
BpuMI	CCSGG	1 cut(s)	97
BsaAI	YACGTR	1 cut(s)	218
BsaBI	GATNNNNATC	2 cut(s)	359, 399
BsaJI	CCNNGG	1 cut(s)	833
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 631, 765
Bse1I	ACTGG	2 cut(s)	11, 487
Bse3DI	GCAATG	1 cut(s)	774
Bse8I	GATNNNNATC	2 cut(s)	359, 399
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	833
BseGI	GGATG	6 cut(s)	45, 124, 186, 287, 321, 774
BseJI	GATNNNNATC	2 cut(s)	359, 399
BseLI	CCNNNNNNNGG	3 cut(s)	36, 631, 765
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	2 cut(s)	391, 695
BseNI	ACTGG	2 cut(s)	11, 487
BseRI	GAGGAG	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	313
BshFI	GGCC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	540
BslI	CCNNNNNNNGG	3 cut(s)	36, 631, 765
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	540
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	1 cut(s)	10
Bsp143I	GATC	4 cut(s)	308, 360, 618, 700
Bsp19I	CCATGG	1 cut(s)	833
BspACI	CCGC	2 cut(s)	178, 313
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	2 cut(s)	390, 694
BspFNI	CGCG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	442
BspTI	CTTAAG	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	774
BsrI	ACTGG	2 cut(s)	11, 487
BssECI	CCNNGG	1 cut(s)	833
BssMI	GATC	4 cut(s)	308, 360, 618, 700
BssT1I	CCWWGG	1 cut(s)	833
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	3 cut(s)	433, 580, 823
Bst6I	CTCTTC	2 cut(s)	415, 450
BstAFI	CTTAAG	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	218
BstDEI	CTNAG	3 cut(s)	259, 377, 681
BstDSI	CCRYGG	1 cut(s)	833
BstF5I	GGATG	6 cut(s)	45, 124, 186, 287, 321, 774
BstFNI	CGCG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	4 cut(s)	311, 363, 621, 703
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	4 cut(s)	308, 360, 618, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 164
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	95, 277
BstUI	CGCG	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	618
BstYI	RGATCY	1 cut(s)	618
BsuRI	GGCC	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	833
BtsCI	GGATG	6 cut(s)	45, 124, 186, 287, 321, 774
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	720
CfoI	GCGC	1 cut(s)	727
Csp6I	GTAC	1 cut(s)	539
CviAII	CATG	5 cut(s)	160, 322, 572, 704, 834
CviJI	RGCY	8 cut(s)	10, 24, 91, 100, 263, 601, 806, 846
CviKI_1	RGCY	8 cut(s)	10, 24, 91, 100, 263, 601, 806, 846
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	3 cut(s)	259, 377, 681
DpnI	GATC	4 cut(s)	310, 362, 620, 702
DpnII	GATC	4 cut(s)	308, 360, 618, 700
DraIII	CACNNNGTG	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	415, 450
EarI	CTCTTC	2 cut(s)	415, 450
Eco130I	CCWWGG	1 cut(s)	833
Eco72I	CACGTG	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	833
ErhI	CCWWGG	1 cut(s)	833
FaeI	CATG	5 cut(s)	163, 325, 575, 707, 837
FaiI	YATR	8 cut(s)	21, 161, 323, 573, 632, 705, 812, 835
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	5 cut(s)	159, 321, 571, 703, 833
FokI	GGATG	6 cut(s)	52, 131, 193, 294, 328, 781
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	726
GsuI	CTGGAG	1 cut(s)	731
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	96
HhaI	GCGC	1 cut(s)	727
Hin1II	CATG	5 cut(s)	163, 325, 575, 707, 837
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	4 cut(s)	131, 387, 423, 677
HpaII	CCGG	1 cut(s)	96
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	4 cut(s)	31, 372, 380, 618
Hpy188III	TCNNGA	5 cut(s)	404, 518, 563, 748, 759
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	3 cut(s)	433, 580, 823
HpyCH4IV	ACGT	2 cut(s)	217, 548
HpyCH4V	TGCA	7 cut(s)	35, 122, 215, 613, 695, 774, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 164
HpyF3I	CTNAG	3 cut(s)	259, 377, 681
HpySE526I	ACGT	2 cut(s)	217, 548
Hsp92II	CATG	5 cut(s)	163, 325, 575, 707, 837
HspAI	GCGC	1 cut(s)	725
Kzo9I	GATC	4 cut(s)	308, 360, 618, 700
LweI	GCATC	5 cut(s)	22, 109, 161, 622, 637
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	217, 548
MaeIII	GTNAC	3 cut(s)	142, 433, 685
MalI	GATC	4 cut(s)	310, 362, 620, 702
MboI	GATC	4 cut(s)	308, 360, 618, 700
MboII	GAAGA	4 cut(s)	432, 467, 566, 763
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	1 cut(s)	618
MluCI	AATT	5 cut(s)	243, 328, 462, 558, 588
MlyI	GAGTC	2 cut(s)	140, 432
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	7 cut(s)	121, 386, 400, 524, 561, 635, 836
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	4 cut(s)	105, 114, 582, 794
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	97, 279
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	97, 164
NciI	CCSGG	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	833
NdeII	GATC	4 cut(s)	308, 360, 618, 700
NlaIII	CATG	5 cut(s)	163, 325, 575, 707, 837
NlaIV	GGNNCC	1 cut(s)	442
PctI	GAATGC	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	387, 677
PleI	GAGTC	2 cut(s)	139, 431
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
PpsI	GAGTC	2 cut(s)	139, 431
Ppu21I	YACGTR	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	277
PspCI	CACGTG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	618
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
SaqAI	TTAA	4 cut(s)	105, 114, 582, 794
Sau3AI	GATC	4 cut(s)	308, 360, 618, 700
SchI	GAGTC	2 cut(s)	140, 432
ScrFI	CCNGG	2 cut(s)	97, 279
SfaNI	GCATC	5 cut(s)	22, 109, 161, 622, 637
SmlI	CTYRAG	2 cut(s)	113, 651
SmoI	CTYRAG	2 cut(s)	113, 651
Sse9I	AATT	5 cut(s)	243, 328, 462, 558, 588
SsiI	CCGC	2 cut(s)	178, 313
SspI	AATATT	1 cut(s)	501
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	95, 277
StyI	CCWWGG	1 cut(s)	833
TaaI	ACNGT	3 cut(s)	433, 580, 823
TaiI	ACGT	2 cut(s)	220, 551
TaqI	TCGA	6 cut(s)	134, 363, 627, 645, 675, 699
TasI	AATT	5 cut(s)	243, 328, 462, 558, 588
TfiI	GAWTC	2 cut(s)	387, 677
Tru1I	TTAA	4 cut(s)	105, 114, 582, 794
Tru9I	TTAA	4 cut(s)	105, 114, 582, 794
TscAI	CASTG	1 cut(s)	727
TspDTI	ATGAA	6 cut(s)	176, 213, 321, 332, 411, 468
TspRI	CASTG	1 cut(s)	727
Vha464I	CTTAAG	1 cut(s)	113
XapI	RAATTY	2 cut(s)	328, 558
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.