Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012643

Physical Location & Seq

Genomic Coordinates Forward (+)

60993525 .. 60994631

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0478700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTTGATGCCATGGAATGCGTCATGGGAAATGAGTACTTATGTTCGGGCTAATGCTTATCTGTCTGAGCTCAATTACGCATTGGCAGAGTGTCGAATCTTTGCAAATGAGGGCAGGGAGATCAACAAGAAGATTTTAGTGTACAGTCCTTCCACGGTTTATTTCCTCCTAAAGATGAAGAGGCGGCTGACCACACTGAAAAGGAAGTTTGTGATTTTGGTCTCTAATGCAAGGGAGCAGAAAGAGAGGAACAACACCGTCAAACGTTTGGGACTACTTACTCAAGAGAAAGTGGCTGTTAAGAAGAATTTAGAAGAAATAGTAGTACTTCCTAATGCAAGTACACTGGAGATTCATGAATTGCTTGTTGATGCAGATCGAGTTGGATTTACTCCAATTGGAATAGTAGGCATGGCTGGTGTGGGTAAATCTACTATGGTGCAAGAGGTTTTGACTTTTCATAGAGTCTCAACTGAGTTTTCGCCCATAGTTCGGTTATGCTTGTCAGATATAATCCCAGAAAAAGAACTAGTAGATAGTACTAGTGCCACTTGGGTCAGCATCAGCATTGTGACATGCATGCTTGACAAGTTGGGCGAGAAAGAAACAAGTATTTCTGGACTCGGCCTTGATTCACTCTTGGAAAGGCTCAACCATATTTTATCGGCTAAAAGGTATCTGATTGTGTTGGATGATGTGTGGCATACTATGGAATTCTACTCGGATATAGGTCTTAATCTTCCAGAAGGTGAGAAATTTGGTGATTGCCTATCACACGGATTACCTAAGGATTGTGGTGGTGCGGTCATTGTCACTAGTAGGATAAGAGAGGTGGCTCAAGACATGGTAGGCCAGAATAATGTATTTCTTTCTAGGCCTTGTGACAAAGGATGGTGCTGGATGCACTTCAGGTCCTTTGTCACGACAAAAGCAGAAGGTTTCAGTGAAGAAAAACGTTTTAGCATGTCAAATTGGGAAATAGTGCAGAAGATTGAGAATGAAATTCTGGATCAAATAGGTGGTCTACCATCAATTGCTAAGGCACTCGCAGAACTAATAGTTGAAAAACGGATTAGTGAGACTGATGATAAGGGGTACCTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

368

Amino Acids

41.54

Weight (kDa)

6.16

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	118 - 310	2.6e-16	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43430 FvH4_6g43430 FvH4_6g43430 FvH4_6g43430
malus_domestica	MD09G1106700.v1.1
prunus_persica	Prupe.3G218900_v2.0.a1 Prupe.3G218900_v2.0.a1
pyrus_communis	pycom09g02930 pycom17g09110
rosa_chinensis	RchiOBHm_Chr2g0159801
rosa_laevigata	RLG00000021182
rosa_multiflora	Rmu_sc0002508.1_g000006 Rmu_sc0016393.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090230
rosa_rugosa	Rorug02G0478700 Rorug02G0478800
rosa_samantha	Rh2BG558400 Rh2DG567500
rosa_wichuraiana	Rw2G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1095
AccB1I	GGYRCC	1 cut(s)	1095
AccI	GTMKAC	1 cut(s)	1024
AciI	CCGC	2 cut(s)	184, 803
AclI	AACGTT	2 cut(s)	265, 955
AclWI	GGATC	1 cut(s)	1017
AcsI	RAATTY	4 cut(s)	307, 713, 755, 1002
AcuI	CTGAAG	1 cut(s)	892
AfaI	GTAC	6 cut(s)	37, 143, 327, 343, 541, 1097
AfiI	CCNNNNNNNGG	1 cut(s)	492
AgsI	TTSAA	1 cut(s)	1064
AhlI	ACTAGT	3 cut(s)	529, 542, 815
AjnI	CCWGG	1 cut(s)	1098
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	3 cut(s)	226, 472, 1073
AlwI	GGATC	1 cut(s)	1017
AoxI	GGCC	3 cut(s)	625, 850, 875
ApoI	RAATTY	4 cut(s)	307, 713, 755, 1002
ArsI	GACNNNNNNTTYG	2 cut(s)	1006, 1038
Asp718I	GGTACC	1 cut(s)	1095
AspS9I	GGNCC	1 cut(s)	912
AsuHPI	GGTGA	2 cut(s)	761, 773
AvaII	GGWCC	1 cut(s)	912
AxyI	CCTNAGG	1 cut(s)	786
BanI	GGYRCC	1 cut(s)	1095
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	2 cut(s)	885, 1036
BciT130I	CCWGG	1 cut(s)	1100
BcoDI	GTCTC	3 cut(s)	226, 472, 1073
BcuI	ACTAGT	3 cut(s)	529, 542, 815
BfaI	CTAG	4 cut(s)	530, 543, 816, 873
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
BmcAI	AGTACT	3 cut(s)	37, 327, 541
Bme1390I	CCNGG	1 cut(s)	1100
Bme18I	GGWCC	1 cut(s)	912
BmgT120I	GGNCC	1 cut(s)	912
BmiI	GGNNCC	1 cut(s)	1097
BmrFI	CCNGG	1 cut(s)	1100
BmsI	GCATC	3 cut(s)	361, 570, 891
BpmI	CTGGAG	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	1038
BpuEI	CTTGAG	2 cut(s)	267, 822
BsaBI	GATNNNNATC	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	11, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
Bse1I	ACTGG	1 cut(s)	351
Bse21I	CCTNAGG	1 cut(s)	786
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	1100
BseDI	CCNNGG	2 cut(s)	11, 153
BseGI	GGATG	3 cut(s)	697, 896, 906
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseMII	CTCAG	2 cut(s)	57, 465
BseNI	ACTGG	1 cut(s)	351
BsgI	GTGCAG	1 cut(s)	1004
BshFI	GGCC	3 cut(s)	627, 852, 877
BshNI	GGYRCC	1 cut(s)	1095
BsiHKAI	GWGCWC	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	492
BsmAI	GTCTC	3 cut(s)	226, 472, 1073
BsmFI	GGGAC	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	627, 852, 877
Bso31I	GGTCTC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	120, 376, 1009
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	2 cut(s)	184, 803
BspANI	GGCC	3 cut(s)	627, 852, 877
BspCNI	CTCAG	2 cut(s)	58, 466
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	1097
BspPI	GGATC	1 cut(s)	1017
BspT107I	GGYRCC	1 cut(s)	1095
BspTNI	GGTCTC	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	2 cut(s)	11, 153
BssMI	GATC	3 cut(s)	120, 376, 1009
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	1100
Bst4CI	ACNGT	3 cut(s)	146, 157, 259
Bst6I	CTCTTC	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	581
BstDEI	CTNAG	4 cut(s)	66, 474, 786, 1038
BstDSI	CCRYGG	2 cut(s)	11, 153
BstF5I	GGATG	3 cut(s)	697, 896, 906
BstKTI	GATC	3 cut(s)	123, 379, 1012
BstMAI	GTCTC	3 cut(s)	226, 472, 1073
BstMBI	GATC	3 cut(s)	120, 376, 1009
BstNI	CCWGG	1 cut(s)	1100
BstNSI	RCATGY	3 cut(s)	579, 583, 967
BstSCI	CCNGG	1 cut(s)	1098
Bsu36I	CCTNAGG	1 cut(s)	786
BsuRI	GGCC	3 cut(s)	627, 852, 877
BtgI	CCRYGG	2 cut(s)	11, 153
BtsCI	GGATG	3 cut(s)	697, 896, 906
BtsIMutI	CAGTG	3 cut(s)	194, 344, 949
Cac8I	GCNNGC	1 cut(s)	581
CciI	TCATGA	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	912
CseI	GACGC	1 cut(s)	9
CsiI	ACCWGGT	1 cut(s)	1098
Csp6I	GTAC	6 cut(s)	36, 142, 326, 342, 540, 1096
CviAII	CATG	8 cut(s)	12, 24, 356, 412, 576, 580, 844, 964
CviQI	GTAC	6 cut(s)	36, 142, 326, 342, 540, 1096
DdeI	CTNAG	4 cut(s)	66, 474, 786, 1038
DpnI	GATC	3 cut(s)	122, 378, 1011
DpnII	GATC	3 cut(s)	120, 376, 1009
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	877
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	912
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	892
Eco81I	CCTNAGG	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	912
EcoRI	GAATTC	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	1098
EcoT14I	CCWWGG	1 cut(s)	11
EcoT22I	ATGCAT	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	8 cut(s)	15, 27, 359, 415, 579, 583, 847, 967
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	8 cut(s)	11, 23, 355, 411, 575, 579, 843, 963
FblI	GTMKAC	1 cut(s)	1024
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	3 cut(s)	704, 903, 913
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	4 cut(s)	530, 543, 816, 873
GluI	GCNGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	3 cut(s)	627, 852, 877
HgaI	GACGC	1 cut(s)	9
Hin1II	CATG	8 cut(s)	15, 27, 359, 415, 579, 583, 847, 967
HinfI	GANTC	5 cut(s)	96, 352, 465, 621, 632
HphI	GGTGA	2 cut(s)	761, 773
Hpy166II	GTNNAC	3 cut(s)	142, 344, 1025
Hpy188I	TCNGA	4 cut(s)	67, 508, 681, 724
Hpy188III	TCNNGA	7 cut(s)	284, 356, 618, 743, 839, 922, 1007
Hpy8I	GTNNAC	3 cut(s)	142, 344, 1025
HpyAV	CCTTC	3 cut(s)	159, 740, 929
HpyCH4III	ACNGT	3 cut(s)	146, 157, 259
HpyCH4IV	ACGT	2 cut(s)	265, 955
HpyCH4V	TGCA	8 cut(s)	104, 230, 338, 374, 442, 579, 904, 985
HpyF3I	CTNAG	4 cut(s)	66, 474, 786, 1038
HpySE526I	ACGT	2 cut(s)	265, 955
Hsp92II	CATG	8 cut(s)	15, 27, 359, 415, 579, 583, 847, 967
KpnI	GGTACC	1 cut(s)	1099
Kzo9I	GATC	3 cut(s)	120, 376, 1009
LmnI	GCTCC	1 cut(s)	235
LweI	GCATC	3 cut(s)	361, 570, 891
MabI	ACCWGGT	1 cut(s)	1098
MaeI	CTAG	4 cut(s)	530, 543, 816, 873
MaeII	ACGT	2 cut(s)	265, 955
MaeIII	GTNAC	4 cut(s)	571, 811, 881, 919
MalI	GATC	3 cut(s)	122, 378, 1011
MboI	GATC	3 cut(s)	120, 376, 1009
MboII	GAAGA	7 cut(s)	142, 190, 316, 326, 731, 959, 1000
MfeI	CAATTG	2 cut(s)	396, 1032
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	9 cut(s)	73, 307, 359, 396, 713, 755, 970, 1002, 1032
MlyI	GAGTC	2 cut(s)	474, 615
MmeI	TCCRAC	2 cut(s)	364, 669
MnlI	CCTC	6 cut(s)	103, 174, 176, 240, 439, 823
Mph1103I	ATGCAT	1 cut(s)	581
MseI	TTAA	3 cut(s)	300, 735, 1105
MspR9I	CCNGG	1 cut(s)	1100
MunI	CAATTG	2 cut(s)	396, 1032
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	1100
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	120, 376, 1009
NlaIII	CATG	8 cut(s)	15, 27, 359, 415, 579, 583, 847, 967
NlaIV	GGNNCC	1 cut(s)	1097
NmeAIII	GCCGAG	1 cut(s)	603
NmuCI	GTSAC	4 cut(s)	571, 811, 881, 919
NsiI	ATGCAT	1 cut(s)	581
NspI	RCATGY	3 cut(s)	579, 583, 967
PaeI	GCATGC	1 cut(s)	583
PagI	TCATGA	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	877
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	3 cut(s)	96, 352, 632
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	2 cut(s)	473, 615
PpsI	GAGTC	2 cut(s)	473, 615
PpuMI	RGGWCCY	1 cut(s)	912
Psp124BI	GAGCTC	1 cut(s)	72
Psp1406I	AACGTT	2 cut(s)	265, 955
Psp5II	RGGWCCY	1 cut(s)	912
Psp6I	CCWGG	1 cut(s)	1098
PspGI	CCWGG	1 cut(s)	1098
PspN4I	GGNNCC	1 cut(s)	1097
PspPI	GGNCC	1 cut(s)	912
PspPPI	RGGWCCY	1 cut(s)	912
RsaI	GTAC	6 cut(s)	37, 143, 327, 343, 541, 1097
RsaNI	GTAC	6 cut(s)	36, 142, 326, 342, 540, 1096
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	300, 735, 1105
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	3 cut(s)	120, 376, 1009
Sau96I	GGNCC	1 cut(s)	912
ScaI	AGTACT	3 cut(s)	37, 327, 541
SchI	GAGTC	2 cut(s)	474, 615
ScrFI	CCNGG	1 cut(s)	1100
SduI	GDGCHC	1 cut(s)	72
SexAI	ACCWGGT	1 cut(s)	1098
SfaNI	GCATC	3 cut(s)	361, 570, 891
SinI	GGWCC	1 cut(s)	912
SmlI	CTYRAG	2 cut(s)	282, 837
SmoI	CTYRAG	2 cut(s)	282, 837
SpeI	ACTAGT	3 cut(s)	529, 542, 815
SphI	GCATGC	1 cut(s)	583
Sse9I	AATT	9 cut(s)	73, 307, 359, 396, 713, 755, 970, 1002, 1032
SseBI	AGGCCT	1 cut(s)	877
SsiI	CCGC	2 cut(s)	184, 803
SspMI	CTAG	4 cut(s)	530, 543, 816, 873
SstI	GAGCTC	1 cut(s)	72
StuI	AGGCCT	1 cut(s)	877
StyD4I	CCNGG	1 cut(s)	1098
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	3 cut(s)	146, 157, 259
TaiI	ACGT	2 cut(s)	268, 958
TaqI	TCGA	2 cut(s)	94, 379
TasI	AATT	9 cut(s)	73, 307, 359, 396, 713, 755, 970, 1002, 1032
TatI	WGTACW	5 cut(s)	35, 141, 325, 341, 539
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	3 cut(s)	96, 352, 632
Tru1I	TTAA	3 cut(s)	300, 735, 1105
Tru9I	TTAA	3 cut(s)	300, 735, 1105
TscAI	CASTG	3 cut(s)	201, 351, 949
TseFI	GTSAC	4 cut(s)	571, 811, 881, 919
Tsp45I	GTSAC	4 cut(s)	571, 811, 881, 919
TspDTI	ATGAA	5 cut(s)	191, 344, 372, 449, 1014
TspGWI	ACGGA	2 cut(s)	792, 1084
TspRI	CASTG	3 cut(s)	201, 351, 949
VpaK11BI	GGWCC	1 cut(s)	912
XapI	RAATTY	4 cut(s)	307, 713, 755, 1002
XceI	RCATGY	3 cut(s)	579, 583, 967
XmiI	GTMKAC	1 cut(s)	1024
XspI	CTAG	4 cut(s)	530, 543, 816, 873
ZrmI	AGTACT	3 cut(s)	37, 327, 541
Zsp2I	ATGCAT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.