Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0012643

Physical Location & Seq

Genomic Coordinates Reverse (-)

7732043 .. 7735792

Gene Structure 3750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1106700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAACGACCTGCTTACGGATTCATTTGTTGGTGAAGCAAAAGCTCAGACTTCTGGAACAGATGATATTGAAATGGGAAGGCCAGTTCCACATAGCTATTCCGATGCAGGGATGGACACTTTCAATAAGCAGATACAAGAGATTGAGAAACAGGTGGATATGCTCTCCGGGCTTCTTAAAAAACTTAAGGATGCAAACGAGGAGTCGAAGTCTGTTACAAAAGCATCTGCCATGAAAGCAATCAAAAAGCGGATGGAAAAAGATATTGATGAAGTAGGAAAGATTGCACGTGGTATCAAAGCGAAACTAGAAGCAATTAGCAAAGATAACTTAGCCAACCGACAAAAACCTGGATGTGAGAAGGGAACAGGTGTTGACAGATCGCGGATGAACATGACAAATTCATTGACAAAAAAGTTTAGGGAGATAATGATCGAGTTTCAGACCCTCAGACAACGAATCCAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTCATTACAGTTACGGGAACCAGACCAGATGAAGAGACAATTGACAACCTGATAGAAACTGGAAATAGTGAGCAAATATTCCAAAAGGCAGTTCAAGAACAGGGACGAGGACAGGTACTAAATACGTTGGAAGAAATTCAAGAGAGGCATGACACCGTTAAGGAAATTGAGAAAAAGCTACTTGACTTGCATCAGATCTACCTCGATATGGCAGTCTTGGTCGATGCTCAAGGAGAGATTTTAGACAATATCGAATCTCAGGTTACGAATGCAGTCGATCATGTTCAATCTGGGAACACTGCGCTTCAAAAAGCAAAGAAACTCCAGAAGAACTCCCGAAAATGGATGTGCATTGCAATCATTATTCTCTTAATAATAGTAGCTATTATAGTCGCTAGCGTCCTCAAACCATGGAAAAGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

307

Amino Acids

34.49

Weight (kDa)

6.49

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	36 - 196	2.8e-51	Syntaxin
SNARE	PF05739	244 - 296	5e-18	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43430 FvH4_6g43430 FvH4_6g43430 FvH4_6g43430
malus_domestica	MD09G1106700.v1.1
prunus_persica	Prupe.3G218900_v2.0.a1 Prupe.3G218900_v2.0.a1
pyrus_communis	pycom09g02930 pycom17g09110
rosa_chinensis	RchiOBHm_Chr2g0159801
rosa_laevigata	RLG00000021182
rosa_multiflora	Rmu_sc0002508.1_g000006 Rmu_sc0016393.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090230
rosa_rugosa	Rorug02G0478700 Rorug02G0478800
rosa_samantha	Rh2BG558400 Rh2DG567500
rosa_wichuraiana	Rw2G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccII	CGCG	1 cut(s)	385
AciI	CCGC	2 cut(s)	250, 385
AcsI	RAATTY	2 cut(s)	400, 630
AcvI	CACGTG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	612
AfiI	CCNNNNNNNGG	4 cut(s)	16, 108, 703, 837
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	6 cut(s)	71, 124, 590, 635, 782, 803
AjnI	CCWGG	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
AluBI	AGCT	4 cut(s)	44, 96, 673, 878
AluI	AGCT	4 cut(s)	44, 96, 673, 878
Alw26I	GTCTC	1 cut(s)	524
AoxI	GGCC	1 cut(s)	80
ApoI	RAATTY	2 cut(s)	400, 630
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	799
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	44
AsuNHI	GCTAGC	1 cut(s)	890
BarI	GAAGNNNNNNTAC	2 cut(s)	484, 516
BbrPI	CACGTG	1 cut(s)	290
BccI	CCATC	2 cut(s)	106, 247
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	2 cut(s)	308, 891
BfrI	CTTAAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	1 cut(s)	690
Bme1390I	CCNGG	2 cut(s)	169, 351
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	2 cut(s)	169, 351
BmsI	GCATC	5 cut(s)	94, 181, 233, 694, 709
BmtI	GCTAGC	1 cut(s)	894
BpmI	CTGGAG	1 cut(s)	803
BpuEI	CTTGAG	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	290
BsaBI	GATNNNNATC	2 cut(s)	431, 471
BsaJI	CCNNGG	1 cut(s)	905
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 108, 703, 837
Bse1I	ACTGG	2 cut(s)	83, 559
Bse3DI	GCAATG	1 cut(s)	846
Bse8I	GATNNNNATC	2 cut(s)	431, 471
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	905
BseGI	GGATG	6 cut(s)	117, 196, 258, 359, 393, 846
BseJI	GATNNNNATC	2 cut(s)	431, 471
BseLI	CCNNNNNNNGG	4 cut(s)	16, 108, 703, 837
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	3 cut(s)	59, 463, 767
BseNI	ACTGG	2 cut(s)	83, 559
BseRI	GAGGAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	385
BshFI	GGCC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	4 cut(s)	16, 108, 703, 837
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	1 cut(s)	612
BsmI	GAATGC	1 cut(s)	769
BsnI	GGCC	1 cut(s)	82
Bsp143I	GATC	4 cut(s)	380, 432, 690, 772
Bsp19I	CCATGG	1 cut(s)	905
BspACI	CCGC	2 cut(s)	250, 385
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	3 cut(s)	58, 462, 766
BspFNI	CGCG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	18
BspOI	GCTAGC	1 cut(s)	894
BspTI	CTTAAG	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	846
BsrI	ACTGG	2 cut(s)	83, 559
BssECI	CCNNGG	1 cut(s)	905
BssMI	GATC	4 cut(s)	380, 432, 690, 772
BssT1I	CCWWGG	1 cut(s)	905
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	505, 652
Bst6I	CTCTTC	2 cut(s)	487, 522
BstAFI	CTTAAG	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	892
BstDEI	CTNAG	4 cut(s)	45, 331, 449, 753
BstDSI	CCRYGG	1 cut(s)	905
BstF5I	GGATG	6 cut(s)	117, 196, 258, 359, 393, 846
BstFNI	CGCG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	799
BstKTI	GATC	4 cut(s)	383, 435, 693, 775
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	4 cut(s)	380, 432, 690, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 236
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	167, 349
BstUI	CGCG	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	905
BtsCI	GGATG	6 cut(s)	117, 196, 258, 359, 393, 846
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	1 cut(s)	792
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	892
CfoI	GCGC	1 cut(s)	799
CseI	GACGC	1 cut(s)	883
Csp6I	GTAC	1 cut(s)	611
CviAII	CATG	5 cut(s)	232, 394, 644, 776, 906
CviJI	RGCY	8 cut(s)	44, 82, 96, 172, 335, 673, 878, 918
CviKI_1	RGCY	8 cut(s)	44, 82, 96, 172, 335, 673, 878, 918
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	4 cut(s)	45, 331, 449, 753
DpnI	GATC	4 cut(s)	382, 434, 692, 774
DpnII	GATC	4 cut(s)	380, 432, 690, 772
Eam1104I	CTCTTC	2 cut(s)	487, 522
EarI	CTCTTC	2 cut(s)	487, 522
Eco130I	CCWWGG	1 cut(s)	905
Eco72I	CACGTG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	905
ErhI	CCWWGG	1 cut(s)	905
FaeI	CATG	5 cut(s)	235, 397, 647, 779, 909
FaiI	YATR	9 cut(s)	93, 161, 233, 395, 645, 704, 777, 884, 907
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	5 cut(s)	231, 393, 643, 775, 905
FokI	GGATG	6 cut(s)	124, 203, 265, 366, 400, 853
FspBI	CTAG	2 cut(s)	308, 891
GlaI	GCGC	1 cut(s)	798
GsuI	CTGGAG	1 cut(s)	803
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	883
HhaI	GCGC	1 cut(s)	799
Hin1II	CATG	5 cut(s)	235, 397, 647, 779, 909
Hin6I	GCGC	1 cut(s)	797
HinP1I	GCGC	1 cut(s)	797
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	5 cut(s)	20, 203, 459, 495, 749
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	5 cut(s)	48, 103, 444, 452, 690
Hpy188III	TCNNGA	6 cut(s)	54, 476, 590, 635, 820, 831
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	72, 355
HpyCH4III	ACNGT	2 cut(s)	505, 652
HpyCH4IV	ACGT	2 cut(s)	289, 620
HpyCH4V	TGCA	7 cut(s)	107, 194, 287, 685, 767, 846, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 236
HpyF3I	CTNAG	4 cut(s)	45, 331, 449, 753
HpySE526I	ACGT	2 cut(s)	289, 620
Hsp92II	CATG	5 cut(s)	235, 397, 647, 779, 909
HspAI	GCGC	1 cut(s)	797
Kzo9I	GATC	4 cut(s)	380, 432, 690, 772
LweI	GCATC	5 cut(s)	94, 181, 233, 694, 709
MaeI	CTAG	2 cut(s)	308, 891
MaeII	ACGT	2 cut(s)	289, 620
MaeIII	GTNAC	3 cut(s)	214, 505, 757
MalI	GATC	4 cut(s)	382, 434, 692, 774
MboI	GATC	4 cut(s)	380, 432, 690, 772
MboII	GAAGA	4 cut(s)	504, 539, 638, 835
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	1 cut(s)	690
MluCI	AATT	5 cut(s)	315, 400, 534, 630, 660
MlyI	GAGTC	2 cut(s)	212, 504
MmeI	TCCRAC	1 cut(s)	603
MnlI	CCTC	7 cut(s)	193, 458, 472, 596, 633, 707, 908
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	4 cut(s)	177, 186, 654, 866
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	169, 351
MunI	CAATTG	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	769
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	2 cut(s)	169, 236
NciI	CCSGG	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	905
NdeII	GATC	4 cut(s)	380, 432, 690, 772
NheI	GCTAGC	1 cut(s)	890
NlaIII	CATG	5 cut(s)	235, 397, 647, 779, 909
NlaIV	GGNNCC	1 cut(s)	514
PctI	GAATGC	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	3 cut(s)	20, 459, 749
PleI	GAGTC	2 cut(s)	211, 503
PmaCI	CACGTG	1 cut(s)	290
PmlI	CACGTG	1 cut(s)	290
PpsI	GAGTC	2 cut(s)	211, 503
Ppu21I	YACGTR	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	349
PspCI	CACGTG	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	690
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
SaqAI	TTAA	4 cut(s)	177, 186, 654, 866
Sau3AI	GATC	4 cut(s)	380, 432, 690, 772
SchI	GAGTC	2 cut(s)	212, 504
ScrFI	CCNGG	2 cut(s)	169, 351
SfaNI	GCATC	5 cut(s)	94, 181, 233, 694, 709
SmlI	CTYRAG	2 cut(s)	185, 723
SmoI	CTYRAG	2 cut(s)	185, 723
Sse9I	AATT	5 cut(s)	315, 400, 534, 630, 660
SsiI	CCGC	2 cut(s)	250, 385
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	2 cut(s)	308, 891
StyD4I	CCNGG	2 cut(s)	167, 349
StyI	CCWWGG	1 cut(s)	905
TaaI	ACNGT	2 cut(s)	505, 652
TaiI	ACGT	2 cut(s)	292, 623
TaqI	TCGA	6 cut(s)	206, 435, 699, 717, 747, 771
TasI	AATT	5 cut(s)	315, 400, 534, 630, 660
TfiI	GAWTC	3 cut(s)	20, 459, 749
Tru1I	TTAA	4 cut(s)	177, 186, 654, 866
Tru9I	TTAA	4 cut(s)	177, 186, 654, 866
TscAI	CASTG	1 cut(s)	799
TspDTI	ATGAA	8 cut(s)	12, 17, 248, 285, 393, 404, 483, 540
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	799
Vha464I	CTTAAG	1 cut(s)	185
XapI	RAATTY	2 cut(s)	400, 630
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	2 cut(s)	308, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.