Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012643

Physical Location & Seq

Genomic Coordinates Forward (+)

22026914 .. 22031120

Gene Structure 4207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAACGACCTGCTTACGGATTCGTTTGTTGGTGATGCAAGAGCTCAGCCTTCCGGAACAAATGATATCGAAATGGGAAGGCCAGTTCCTAGCAGTTTTGACACAGGAATGGATGCTTTCAATAAGCAGATACAAGAGGTTGAGAAACAGGTGGATAAGCTCTCCGGACTTCTAAAAAAACTTAAGGATGCAAATGAGGAGTCGAAGTCTGTTACAAAAGCATCTGCCATGAAAGCAATTAAAAAGCGGATGGAAAAAGATATTGATGAAGTGGGAAAGATTGCACGTGGTGTCAAAACAAAACTAGAAGCAATAAGCAAAGATAACTTATCCAACCGACAAAAGCCTGGATGTGAGAAGGGAACAGGCGTTGACAGATCAAGAATGAACATGACAAATTCCTTGACAAAAAAGTTTAGGGAGATAATGATTGAGTTTCAGACCCTCAGACAACGAATCCAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTCATTACAGTTACGGGAACCAGACCAGATGAGGAGACAATTGACAACCTGATAGAAACTGGAAATAGTGAGCAAATATTCCAAAAGGCAGTTCAAGAAATGGGAAGAGGACAGGTGCTAAATACTGTGGAAGAAATTCAGGAGAGGCATGACACTGTAAAAGAAATTGAGAAAAAGCTTCTTGACTTGCATCAGATCTACCTCGATATGGCAGTCTTGGTTGAGGCTCAAGGAGAGATTTTAGACAACATTGAAACTCAGGTTACGAATGCAGTCGATCATGTTCAATCTGGGAACACTGCACTTCAAAAAGCAAAGAAACTCCAGAAGAACTCCCGAAAATGGATGTGCATTGCCATCATTATTCTCTTAATAATAGTAGCTATTATAGTTGTCAGTGTCCTCAAACCATGGAAAAGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

306

Amino Acids

34.41

Weight (kDa)

7.68

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43430 FvH4_6g43430 FvH4_6g43430 FvH4_6g43430
malus_domestica	MD09G1106700.v1.1
prunus_persica	Prupe.3G218900_v2.0.a1 Prupe.3G218900_v2.0.a1
pyrus_communis	pycom09g02930 pycom17g09110
rosa_chinensis	RchiOBHm_Chr2g0159801
rosa_laevigata	RLG00000021182
rosa_multiflora	Rmu_sc0002508.1_g000006 Rmu_sc0016393.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090230
rosa_rugosa	Rorug02G0478700 Rorug02G0478800
rosa_samantha	Rh2BG558400 Rh2DG567500
rosa_wichuraiana	Rw2G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccIII	TCCGGA	2 cut(s)	53, 164
AciI	CCGC	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	397, 627
AcvI	CACGTG	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	16, 700, 834
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	5 cut(s)	121, 587, 746, 779, 800
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	567, 599
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
AluBI	AGCT	4 cut(s)	44, 160, 670, 875
AluI	AGCT	4 cut(s)	44, 160, 670, 875
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	521
Aor13HI	TCCGGA	2 cut(s)	53, 164
AoxI	GGCC	1 cut(s)	80
ApoI	RAATTY	2 cut(s)	397, 627
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
Asp700I	GAANNNNTTC	1 cut(s)	627
AsuHPI	GGTGA	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	481, 513
BbrPI	CACGTG	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	46
BccI	CCATC	2 cut(s)	244, 857
BciT130I	CCWGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	3 cut(s)	90, 305, 916
BfrI	CTTAAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	1 cut(s)	687
BlpI	GCTNAGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	5 cut(s)	25, 103, 178, 230, 691
BpmI	CTGGAG	1 cut(s)	800
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	705
BsaAI	YACGTR	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	902
BsaWI	WCCGGW	2 cut(s)	53, 164
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 700, 834
Bse1I	ACTGG	2 cut(s)	83, 556
Bse3DI	GCAATG	1 cut(s)	843
Bse8I	GATNNNNATC	1 cut(s)	468
BseAI	TCCGGA	2 cut(s)	53, 164
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	902
BseGI	GGATG	5 cut(s)	118, 193, 255, 356, 843
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	3 cut(s)	16, 700, 834
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	3 cut(s)	59, 460, 764
BseNI	ACTGG	2 cut(s)	83, 556
BseRI	GAGGAG	2 cut(s)	212, 539
BsgI	GTGCAG	1 cut(s)	777
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	54, 165
BslI	CCNNNNNNNGG	3 cut(s)	16, 700, 834
BsmAI	GTCTC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	2 cut(s)	53, 164
Bsp143I	GATC	3 cut(s)	377, 687, 769
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	902
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	3 cut(s)	58, 459, 763
BspEI	TCCGGA	2 cut(s)	53, 164
BspLI	GGNNCC	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	18
BspTI	CTTAAG	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	843
BsrI	ACTGG	2 cut(s)	83, 556
BssECI	CCNNGG	1 cut(s)	902
BssMI	GATC	3 cut(s)	377, 687, 769
BssT1I	CCWWGG	1 cut(s)	902
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	502, 619, 649
Bst6I	CTCTTC	2 cut(s)	484, 592
BstAFI	CTTAAG	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	45, 446, 750
BstDSI	CCRYGG	1 cut(s)	902
BstF5I	GGATG	5 cut(s)	118, 193, 255, 356, 843
BstKTI	GATC	3 cut(s)	380, 690, 772
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	3 cut(s)	377, 687, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	687
BstYI	RGATCY	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	902
BtsCI	GGATG	5 cut(s)	118, 193, 255, 356, 843
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	3 cut(s)	645, 789, 895
BveI	ACCTGC	1 cut(s)	18
CviAII	CATG	5 cut(s)	229, 391, 641, 773, 903
CviJI	RGCY	9 cut(s)	44, 49, 82, 160, 346, 670, 719, 875, 915
CviKI_1	RGCY	9 cut(s)	44, 49, 82, 160, 346, 670, 719, 875, 915
DdeI	CTNAG	3 cut(s)	45, 446, 750
DpnI	GATC	3 cut(s)	379, 689, 771
DpnII	GATC	3 cut(s)	377, 687, 769
DraIII	CACNNNGTG	1 cut(s)	290
Eam1104I	CTCTTC	2 cut(s)	484, 592
EarI	CTCTTC	2 cut(s)	484, 592
Ecl136II	GAGCTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	902
Eco24I	GRGCYC	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	346
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	902
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	902
FaeI	CATG	5 cut(s)	232, 394, 644, 776, 906
FaiI	YATR	7 cut(s)	230, 392, 642, 701, 774, 881, 904
FatI	CATG	5 cut(s)	228, 390, 640, 772, 902
FokI	GGATG	5 cut(s)	125, 200, 262, 363, 850
FriOI	GRGCYC	1 cut(s)	46
FspBI	CTAG	3 cut(s)	90, 305, 916
GsuI	CTGGAG	1 cut(s)	800
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	54, 165
Hin1II	CATG	5 cut(s)	232, 394, 644, 776, 906
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	4 cut(s)	20, 200, 456, 492
HpaII	CCGG	2 cut(s)	54, 165
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	441, 449, 687
Hpy188III	TCNNGA	9 cut(s)	54, 165, 381, 473, 587, 632, 674, 817, 828
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	3 cut(s)	60, 72, 352
HpyCH4III	ACNGT	3 cut(s)	502, 619, 649
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	7 cut(s)	38, 191, 284, 682, 764, 794, 843
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	3 cut(s)	45, 446, 750
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	5 cut(s)	232, 394, 644, 776, 906
Kpn2I	TCCGGA	2 cut(s)	53, 164
Kzo9I	GATC	3 cut(s)	377, 687, 769
LweI	GCATC	5 cut(s)	25, 103, 178, 230, 691
MaeI	CTAG	3 cut(s)	90, 305, 916
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	3 cut(s)	211, 502, 754
MalI	GATC	3 cut(s)	379, 689, 771
MboI	GATC	3 cut(s)	377, 687, 769
MboII	GAAGA	4 cut(s)	501, 609, 635, 832
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	687
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	5 cut(s)	237, 397, 531, 627, 657
MlyI	GAGTC	2 cut(s)	209, 501
MmeI	TCCRAC	1 cut(s)	357
MroI	TCCGGA	2 cut(s)	53, 164
MroXI	GAANNNNTTC	1 cut(s)	627
MseI	TTAA	3 cut(s)	183, 240, 863
MslI	CAYNNNNRTG	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	2 cut(s)	54, 165
MspR9I	CCNGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	902
NdeII	GATC	3 cut(s)	377, 687, 769
NlaIII	CATG	5 cut(s)	232, 394, 644, 776, 906
NlaIV	GGNNCC	1 cut(s)	511
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	20, 456
PleI	GAGTC	2 cut(s)	208, 500
PmaCI	CACGTG	1 cut(s)	287
PmlI	CACGTG	1 cut(s)	287
PpsI	GAGTC	2 cut(s)	208, 500
Ppu21I	YACGTR	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	346
PspCI	CACGTG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	687
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	183, 240, 863
Sau3AI	GATC	3 cut(s)	377, 687, 769
SchI	GAGTC	2 cut(s)	209, 501
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	5 cut(s)	25, 103, 178, 230, 691
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	182, 720
SmoI	CTYRAG	2 cut(s)	182, 720
Sse9I	AATT	5 cut(s)	237, 397, 531, 627, 657
SsiI	CCGC	1 cut(s)	247
SspI	AATATT	1 cut(s)	570
SspMI	CTAG	3 cut(s)	90, 305, 916
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	1 cut(s)	902
TaaI	ACNGT	3 cut(s)	502, 619, 649
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	4 cut(s)	69, 203, 696, 768
TasI	AATT	5 cut(s)	237, 397, 531, 627, 657
TfiI	GAWTC	2 cut(s)	20, 456
Tru1I	TTAA	3 cut(s)	183, 240, 863
Tru9I	TTAA	3 cut(s)	183, 240, 863
TscAI	CASTG	3 cut(s)	652, 796, 895
TspDTI	ATGAA	5 cut(s)	17, 245, 282, 401, 480
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	3 cut(s)	652, 796, 895
Vha464I	CTTAAG	1 cut(s)	182
XapI	RAATTY	2 cut(s)	397, 627
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	3 cut(s)	90, 305, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.