Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012643

Physical Location & Seq

Genomic Coordinates Reverse (-)

12021944 .. 12025754

Gene Structure 3811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAACGACCTGCTTACGTGTTCTGATCTGGGTTTATTTGCTTTGATTAAGAAAAGGGTTTATGCTGGTGGGTTTGAATTGGATTCGTTTGTCAGTGAGGCAAGTGCTCAGCCTTCCGGAACAAATGATATCGAAATGGGAAGGCCAATTCCCCGCAGCGTGTCTGATGGCGGAATGGATAGTTTCAACAAGCAGATCCAAGAGGTTGAGAAACAGGTGGAAAAGCTCTCCGGGCTTCTTAAAAAACTTAAGGATGCGAATGAGGAGTCGAAGGCTGTTACAAAAGCATCTGCCATGAAAGCAATAAAAAAGCGGATGGAAAAAGATATTGATGAAGTGGGAAAGATTGCCCGTGGTGTCAAAGGAAAACTAGAAGCAATAAGCAAAGATAACTTAGCCAACCGACAGAAGCCTGGATGTGAGAAGGGAACAGGTGTTGACAGATCAAGGATGAACATGACAAATTCATTGACGAAAAAGTTTAGGGAGATAATGATCGAATTTCAGACCCTTAGACAAAGAATCCAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTCATTACAGCAGTTACAGGAACTAGACCAGACGAAGAGACAATTGACAATCTAATAGAAACTGGAAACAGTGAGCAAATATTCCAGAAGGCAGTCCAAGAACAAGGACGAGGACAGGTACTAAATACTTTGGAAGAAATTCAAGAGAGGCATGACACCGTAAAAGAAATTGAGAAAAAGCTTCTTGACTTGCATCAGATCTACCTCGATATGGCAGTCTTGGTTGATGCTCAAGGAGAGGTTTTAGATAACATTGAAACTCAGGTTTCGAGTACAGTTGATTATATGCAATCTGGGACCACTCAACTTCAAAATGCAAAGAAACTCCAGAAGAACTCCAGAAAATGGATGTGCATTGCCATCATCATTCTTTTAATTATAGTAGCTGTTATAGTTGTCGGTGTCCTCAAACCATGGAAAAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

328

Amino Acids

36.81

Weight (kDa)

7.61

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	58 - 218	1.4e-49	Syntaxin
SNARE	PF05739	266 - 318	6.3e-18	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43430 FvH4_6g43430 FvH4_6g43430 FvH4_6g43430
malus_domestica	MD09G1106700.v1.1
prunus_persica	Prupe.3G218900_v2.0.a1 Prupe.3G218900_v2.0.a1
pyrus_communis	pycom09g02930 pycom17g09110
rosa_chinensis	RchiOBHm_Chr2g0159801
rosa_laevigata	RLG00000021182
rosa_multiflora	Rmu_sc0002508.1_g000006 Rmu_sc0016393.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090230
rosa_rugosa	Rorug02G0478700 Rorug02G0478800
rosa_samantha	Rh2BG558400 Rh2DG567500
rosa_wichuraiana	Rw2G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	903
AccIII	TCCGGA	1 cut(s)	116
AciI	CCGC	3 cut(s)	154, 171, 313
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	3 cut(s)	463, 500, 696
AfaI	GTAC	2 cut(s)	678, 832
AfiI	CCNNNNNNNGG	2 cut(s)	769, 903
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	17
AgsI	TTSAA	5 cut(s)	77, 187, 701, 815, 869
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	4 cut(s)	226, 739, 944, 984
AluI	AGCT	4 cut(s)	226, 739, 944, 984
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	1 cut(s)	190
Aor13HI	TCCGGA	1 cut(s)	116
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	156, 981
ApoI	RAATTY	3 cut(s)	463, 500, 696
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
Asp700I	GAANNNNTTC	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	855
AsuC2I	CCSGG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	855
BarI	GAAGNNNNNNTAC	2 cut(s)	547, 579
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	3 cut(s)	161, 310, 926
BciT130I	CCWGG	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	590
BfaI	CTAG	3 cut(s)	371, 582, 985
BfrI	CTTAAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	1 cut(s)	756
BisI	GCNGC	2 cut(s)	157, 982
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	2 cut(s)	158, 983
Bme1390I	CCNGG	2 cut(s)	232, 414
Bme18I	GGWCC	1 cut(s)	855
BmgT120I	GGNCC	1 cut(s)	855
BmiI	GGNNCC	1 cut(s)	856
BmrFI	CCNGG	2 cut(s)	232, 414
BmsI	GCATC	4 cut(s)	244, 296, 760, 775
BpmI	CTGGAG	2 cut(s)	869, 880
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	232
BsaAI	YACGTR	1 cut(s)	18
BsaBI	GATNNNNATC	2 cut(s)	494, 534
BsaJI	CCNNGG	2 cut(s)	352, 971
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	769, 903
Bse1I	ACTGG	1 cut(s)	625
Bse3DI	GCAATG	1 cut(s)	912
Bse8I	GATNNNNATC	2 cut(s)	494, 534
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	352, 971
BseGI	GGATG	5 cut(s)	259, 321, 422, 456, 912
BseJI	GATNNNNATC	2 cut(s)	494, 534
BseLI	CCNNNNNNNGG	2 cut(s)	769, 903
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	2 cut(s)	122, 833
BseNI	ACTGG	1 cut(s)	625
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	168
BshFI	GGCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	117, 231
BslFI	GGGAC	1 cut(s)	868
BslI	CCNNNNNNNGG	2 cut(s)	769, 903
BsmAI	GTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	868
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	5 cut(s)	25, 195, 443, 495, 756
Bsp1720I	GCTNAGC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	971
BspACI	CCGC	3 cut(s)	154, 171, 313
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	2 cut(s)	121, 832
BspEI	TCCGGA	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	856
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	912
BsrI	ACTGG	1 cut(s)	625
BssECI	CCNNGG	2 cut(s)	352, 971
BssMI	GATC	5 cut(s)	25, 195, 443, 495, 756
BssT1I	CCWWGG	1 cut(s)	971
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	3 cut(s)	629, 718, 835
Bst6I	CTCTTC	2 cut(s)	550, 588
BstAFI	CTTAAG	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	18
BstDEI	CTNAG	4 cut(s)	108, 394, 512, 819
BstDSI	CCRYGG	2 cut(s)	352, 971
BstF5I	GGATG	5 cut(s)	259, 321, 422, 456, 912
BstKTI	GATC	5 cut(s)	28, 198, 446, 498, 759
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	5 cut(s)	25, 195, 443, 495, 756
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 299
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	230, 412
BstV1I	GCAGC	1 cut(s)	168
BstX2I	RGATCY	2 cut(s)	195, 756
BstYI	RGATCY	2 cut(s)	195, 756
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	2 cut(s)	352, 971
BtsCI	GGATG	5 cut(s)	259, 321, 422, 456, 912
BtsIMutI	CAGTG	2 cut(s)	100, 634
BveI	ACCTGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	855
Csp6I	GTAC	2 cut(s)	677, 831
CviAII	CATG	4 cut(s)	295, 457, 710, 972
CviQI	GTAC	2 cut(s)	677, 831
DdeI	CTNAG	4 cut(s)	108, 394, 512, 819
DpnI	GATC	5 cut(s)	27, 197, 445, 497, 758
DpnII	GATC	5 cut(s)	25, 195, 443, 495, 756
Eam1104I	CTCTTC	2 cut(s)	550, 588
EarI	CTCTTC	2 cut(s)	550, 588
EciI	GGCGGA	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	971
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	855
EcoRII	CCWGG	1 cut(s)	412
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	971
ErhI	CCWWGG	1 cut(s)	971
FaeI	CATG	4 cut(s)	298, 460, 713, 975
FaqI	GGGAC	1 cut(s)	868
FatI	CATG	4 cut(s)	294, 456, 709, 971
FauI	CCCGC	1 cut(s)	161
Fnu4HI	GCNGC	2 cut(s)	157, 982
FokI	GGATG	5 cut(s)	266, 328, 429, 463, 919
Fsp4HI	GCNGC	2 cut(s)	157, 982
FspBI	CTAG	3 cut(s)	371, 582, 985
GluI	GCNGC	2 cut(s)	157, 982
GsuI	CTGGAG	2 cut(s)	869, 880
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	2 cut(s)	117, 231
Hin1II	CATG	4 cut(s)	298, 460, 713, 975
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	4 cut(s)	83, 266, 522, 558
HpaII	CCGG	2 cut(s)	117, 231
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	4 cut(s)	25, 166, 507, 756
Hpy188III	TCNNGA	7 cut(s)	117, 539, 643, 701, 743, 886, 897
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	5 cut(s)	123, 135, 265, 418, 640
HpyCH4III	ACNGT	3 cut(s)	629, 718, 835
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	4 cut(s)	751, 847, 875, 912
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 299
HpyF3I	CTNAG	4 cut(s)	108, 394, 512, 819
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	298, 460, 713, 975
Kpn2I	TCCGGA	1 cut(s)	116
Kzo9I	GATC	5 cut(s)	25, 195, 443, 495, 756
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	4 cut(s)	244, 296, 760, 775
MaeI	CTAG	3 cut(s)	371, 582, 985
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	277, 571
MalI	GATC	5 cut(s)	27, 197, 445, 497, 758
MboI	GATC	5 cut(s)	25, 195, 443, 495, 756
MboII	GAAGA	4 cut(s)	567, 605, 704, 901
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	2 cut(s)	195, 756
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	8 cut(s)	77, 147, 463, 500, 600, 696, 726, 933
MlyI	GAGTC	2 cut(s)	275, 567
MnlI	CCTC	9 cut(s)	91, 196, 256, 535, 662, 699, 773, 790, 974
MroI	TCCGGA	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	4 cut(s)	48, 240, 249, 932
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	2 cut(s)	117, 231
MspR9I	CCNGG	2 cut(s)	232, 414
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	232, 299
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	971
NdeII	GATC	5 cut(s)	25, 195, 443, 495, 756
NlaIII	CATG	4 cut(s)	298, 460, 713, 975
NlaIV	GGNNCC	1 cut(s)	856
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	83, 522
PflMI	CCANNNNNTGG	1 cut(s)	903
PkrI	GCNGC	2 cut(s)	158, 983
PleI	GAGTC	2 cut(s)	274, 566
PpsI	GAGTC	2 cut(s)	274, 566
Ppu21I	YACGTR	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	856
PspPI	GGNCC	1 cut(s)	855
PsuI	RGATCY	2 cut(s)	195, 756
RsaI	GTAC	2 cut(s)	678, 832
RsaNI	GTAC	2 cut(s)	677, 831
SaqAI	TTAA	4 cut(s)	48, 240, 249, 932
SatI	GCNGC	2 cut(s)	157, 982
Sau3AI	GATC	5 cut(s)	25, 195, 443, 495, 756
Sau96I	GGNCC	1 cut(s)	855
SchI	GAGTC	2 cut(s)	275, 567
ScrFI	CCNGG	2 cut(s)	232, 414
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	4 cut(s)	244, 296, 760, 775
SinI	GGWCC	1 cut(s)	855
SmlI	CTYRAG	2 cut(s)	248, 789
SmoI	CTYRAG	2 cut(s)	248, 789
Sse9I	AATT	8 cut(s)	77, 147, 463, 500, 600, 696, 726, 933
SsiI	CCGC	3 cut(s)	154, 171, 313
SspI	AATATT	1 cut(s)	639
SspMI	CTAG	3 cut(s)	371, 582, 985
StyD4I	CCNGG	2 cut(s)	230, 412
StyI	CCWWGG	1 cut(s)	971
TaaI	ACNGT	3 cut(s)	629, 718, 835
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	5 cut(s)	132, 269, 498, 765, 827
TasI	AATT	8 cut(s)	77, 147, 463, 500, 600, 696, 726, 933
TatI	WGTACW	1 cut(s)	830
TfiI	GAWTC	2 cut(s)	83, 522
Tru1I	TTAA	4 cut(s)	48, 240, 249, 932
Tru9I	TTAA	4 cut(s)	48, 240, 249, 932
TscAI	CASTG	2 cut(s)	100, 634
TseI	GCWGC	2 cut(s)	156, 981
TspDTI	ATGAA	6 cut(s)	17, 311, 348, 456, 467, 546
TspRI	CASTG	2 cut(s)	100, 634
Van91I	CCANNNNNTGG	1 cut(s)	903
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	855
XapI	RAATTY	3 cut(s)	463, 500, 696
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	3 cut(s)	371, 582, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.