Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016393.1

Orthogroup ID

OG0012643

Physical Location & Seq

Genomic Coordinates Forward (+)

16179 .. 19643

Gene Structure 3465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016393.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgaacgacctgcttacggattcatttgtcagtgaggcaagtgctcagccttccggaacaaatgatatcgaaatgggaaggccaattcccctttgcgtgtctgatggcggaatggatagtttcaacaagcaggattcatttgtcagtgaggcaagtgctcagccttccggaacaaatgatatcgaaatgggaaggccaattcccctttgcgtgtctgatggcggaatggatagtttcaacaagcagatccaagaggttgagaaacaggtggaaaagctttccgggcttcttaaaaaacttaaggatgcgaatgaggagtcgaaggctgttacaaaagcatctgccatgaaagcaatcaaaaagcggatggaaaaagatattgatgaagtgggaaagattgcccgtggtgtcaaaggaaaactagaagcaataagcaaagataacttagccaaccgacagaagcctggatgtgagaagggaacaggtgttgacagatcaaggatgaacatgacaaattcattgacgaaaaagtttagggagataatgatcgaatttcagacccttagacaaagaatccaagatgaatatcgtgaggttgtggagagaagagtcattacagttacaggaactagaccagatgaagagacaattgacaatctaatagaaactggaaatagtgagcaaatattccagaaggcagtccaagaacagggacgaggacaggtactaaatactttggaagaaattcaagagaggcatgacaccgtaaaagaaattgagaagaagcttcttgacttgcatcagatctacctcgatatggcagtattggttgatgctcaaggagaggttttagataacattgaaactcaggtttcgagtacagttgattatatgcaatctgggaccactcaacttcaaaatgcaaagaaactccagaagaactccagaaaatggatgtgcattgccatcatgattcttttaattatagtagctgttatagttgtcggtgtcctcaaaccatggaaaagcagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

344

Amino Acids

38.42

Weight (kDa)

5.47

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43430 FvH4_6g43430 FvH4_6g43430 FvH4_6g43430
malus_domestica	MD09G1106700.v1.1
prunus_persica	Prupe.3G218900_v2.0.a1 Prupe.3G218900_v2.0.a1
pyrus_communis	pycom09g02930 pycom17g09110
rosa_chinensis	RchiOBHm_Chr2g0159801
rosa_laevigata	RLG00000021182
rosa_multiflora	Rmu_sc0002508.1_g000006 Rmu_sc0016393.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090230
rosa_rugosa	Rorug02G0478700 Rorug02G0478800
rosa_samantha	Rh2BG558400 Rh2DG567500
rosa_wichuraiana	Rw2G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	951
AccIII	TCCGGA	2 cut(s)	53, 167
AciI	CCGC	3 cut(s)	108, 222, 364
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	3 cut(s)	514, 551, 744
AfaI	GTAC	2 cut(s)	726, 880
AfiI	CCNNNNNNNGG	4 cut(s)	16, 709, 817, 951
AflII	CTTAAG	1 cut(s)	299
AgsI	TTSAA	5 cut(s)	124, 238, 749, 863, 917
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	4 cut(s)	277, 787, 992, 1032
AluI	AGCT	4 cut(s)	277, 787, 992, 1032
Alw21I	GWGCWC	2 cut(s)	46, 160
Alw26I	GTCTC	1 cut(s)	638
AlwI	GGATC	1 cut(s)	241
Aor13HI	TCCGGA	2 cut(s)	53, 167
AoxI	GGCC	2 cut(s)	80, 194
ApeKI	GCWGC	1 cut(s)	1029
ApoI	RAATTY	3 cut(s)	514, 551, 744
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
Asp700I	GAANNNNTTC	1 cut(s)	744
AspS9I	GGNCC	1 cut(s)	903
AsuC2I	CCSGG	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	903
BarI	GAAGNNNNNNTAC	2 cut(s)	598, 630
Bbv12I	GWGCWC	2 cut(s)	46, 160
BccI	CCATC	4 cut(s)	98, 212, 361, 974
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	638
BfaI	CTAG	3 cut(s)	422, 630, 1033
BfrI	CTTAAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	1 cut(s)	804
BisI	GCNGC	1 cut(s)	1030
BlpI	GCTNAGC	2 cut(s)	45, 159
BlsI	GCNGC	1 cut(s)	1031
Bme1390I	CCNGG	2 cut(s)	283, 465
Bme18I	GGWCC	1 cut(s)	903
BmgT120I	GGNCC	1 cut(s)	903
BmiI	GGNNCC	1 cut(s)	904
BmrFI	CCNGG	2 cut(s)	283, 465
BmsI	GCATC	4 cut(s)	295, 347, 808, 823
BpmI	CTGGAG	2 cut(s)	917, 928
Bpu1102I	GCTNAGC	2 cut(s)	45, 159
BpuEI	CTTGAG	1 cut(s)	822
BpuMI	CCSGG	1 cut(s)	283
BsaBI	GATNNNNATC	2 cut(s)	545, 585
BsaJI	CCNNGG	2 cut(s)	403, 1019
BsaWI	WCCGGW	2 cut(s)	53, 167
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 709, 817, 951
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	1 cut(s)	960
Bse8I	GATNNNNATC	2 cut(s)	545, 585
BseAI	TCCGGA	2 cut(s)	53, 167
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	2 cut(s)	403, 1019
BseGI	GGATG	5 cut(s)	310, 372, 473, 507, 960
BseJI	GATNNNNATC	2 cut(s)	545, 585
BseLI	CCNNNNNNNGG	4 cut(s)	16, 709, 817, 951
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	3 cut(s)	59, 173, 881
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	82, 196
BsiHKAI	GWGCWC	2 cut(s)	46, 160
BsiSI	CCGG	3 cut(s)	54, 168, 282
BslFI	GGGAC	2 cut(s)	726, 916
BslI	CCNNNNNNNGG	4 cut(s)	16, 709, 817, 951
BsmAI	GTCTC	1 cut(s)	638
BsmFI	GGGAC	2 cut(s)	726, 916
BsnI	GGCC	2 cut(s)	82, 196
Bsp1286I	GDGCHC	2 cut(s)	46, 160
Bsp13I	TCCGGA	2 cut(s)	53, 167
Bsp143I	GATC	4 cut(s)	246, 494, 546, 804
Bsp1720I	GCTNAGC	2 cut(s)	45, 159
Bsp19I	CCATGG	1 cut(s)	1019
BspACI	CCGC	3 cut(s)	108, 222, 364
BspANI	GGCC	2 cut(s)	82, 196
BspCNI	CTCAG	3 cut(s)	58, 172, 880
BspEI	TCCGGA	2 cut(s)	53, 167
BspHI	TCATGA	1 cut(s)	969
BspLI	GGNNCC	1 cut(s)	904
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	241
BspTI	CTTAAG	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	960
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	2 cut(s)	403, 1019
BssMI	GATC	4 cut(s)	246, 494, 546, 804
BssT1I	CCWWGG	1 cut(s)	1019
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	3 cut(s)	619, 766, 883
Bst6I	CTCTTC	2 cut(s)	601, 636
BstAFI	CTTAAG	1 cut(s)	299
BstDEI	CTNAG	5 cut(s)	45, 159, 445, 563, 867
BstDSI	CCRYGG	2 cut(s)	403, 1019
BstF5I	GGATG	5 cut(s)	310, 372, 473, 507, 960
BstKTI	GATC	4 cut(s)	249, 497, 549, 807
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	4 cut(s)	246, 494, 546, 804
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 350
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	2 cut(s)	281, 463
BstX2I	RGATCY	2 cut(s)	246, 804
BstYI	RGATCY	2 cut(s)	246, 804
BsuRI	GGCC	2 cut(s)	82, 196
BtgI	CCRYGG	2 cut(s)	403, 1019
BtsCI	GGATG	5 cut(s)	310, 372, 473, 507, 960
BtsIMutI	CAGTG	2 cut(s)	37, 151
BveI	ACCTGC	1 cut(s)	18
CciI	TCATGA	1 cut(s)	969
Cfr13I	GGNCC	1 cut(s)	903
Csp6I	GTAC	2 cut(s)	725, 879
CviAII	CATG	5 cut(s)	346, 508, 758, 970, 1020
CviQI	GTAC	2 cut(s)	725, 879
DdeI	CTNAG	5 cut(s)	45, 159, 445, 563, 867
DpnI	GATC	4 cut(s)	248, 496, 548, 806
DpnII	GATC	4 cut(s)	246, 494, 546, 804
Eam1104I	CTCTTC	2 cut(s)	601, 636
EarI	CTCTTC	2 cut(s)	601, 636
EciI	GGCGGA	2 cut(s)	123, 237
Eco130I	CCWWGG	1 cut(s)	1019
Eco32I	GATATC	2 cut(s)	67, 181
Eco47I	GGWCC	1 cut(s)	903
EcoRII	CCWGG	1 cut(s)	463
EcoRV	GATATC	2 cut(s)	67, 181
EcoT14I	CCWWGG	1 cut(s)	1019
ErhI	CCWWGG	1 cut(s)	1019
FaeI	CATG	5 cut(s)	349, 511, 761, 973, 1023
FaqI	GGGAC	2 cut(s)	726, 916
FatI	CATG	5 cut(s)	345, 507, 757, 969, 1019
Fnu4HI	GCNGC	1 cut(s)	1030
FokI	GGATG	5 cut(s)	317, 379, 480, 514, 967
Fsp4HI	GCNGC	1 cut(s)	1030
FspBI	CTAG	3 cut(s)	422, 630, 1033
GluI	GCNGC	1 cut(s)	1030
GsuI	CTGGAG	2 cut(s)	917, 928
HaeIII	GGCC	2 cut(s)	82, 196
HapII	CCGG	3 cut(s)	54, 168, 282
Hin1II	CATG	5 cut(s)	349, 511, 761, 973, 1023
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	2 cut(s)	275, 785
HinfI	GANTC	6 cut(s)	20, 134, 317, 573, 609, 973
HpaII	CCGG	3 cut(s)	54, 168, 282
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	4 cut(s)	103, 217, 558, 804
Hpy188III	TCNNGA	9 cut(s)	54, 168, 590, 691, 749, 791, 934, 945, 970
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	7 cut(s)	60, 72, 174, 186, 316, 469, 688
HpyCH4III	ACNGT	3 cut(s)	619, 766, 883
HpyCH4V	TGCA	4 cut(s)	799, 895, 923, 960
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 350
HpyF3I	CTNAG	5 cut(s)	45, 159, 445, 563, 867
Hsp92II	CATG	5 cut(s)	349, 511, 761, 973, 1023
Kpn2I	TCCGGA	2 cut(s)	53, 167
Kzo9I	GATC	4 cut(s)	246, 494, 546, 804
LweI	GCATC	4 cut(s)	295, 347, 808, 823
MaeI	CTAG	3 cut(s)	422, 630, 1033
MaeIII	GTNAC	2 cut(s)	328, 619
MalI	GATC	4 cut(s)	248, 496, 548, 806
MboI	GATC	4 cut(s)	246, 494, 546, 804
MboII	GAAGA	5 cut(s)	618, 653, 752, 793, 949
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	2 cut(s)	246, 804
MhlI	GDGCHC	2 cut(s)	46, 160
MluCI	AATT	8 cut(s)	84, 198, 514, 551, 648, 744, 774, 981
MlyI	GAGTC	2 cut(s)	326, 618
MroI	TCCGGA	2 cut(s)	53, 167
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	3 cut(s)	291, 300, 980
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	3 cut(s)	54, 168, 282
MspR9I	CCNGG	2 cut(s)	283, 465
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	2 cut(s)	283, 350
NciI	CCSGG	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	1019
NdeII	GATC	4 cut(s)	246, 494, 546, 804
NlaIII	CATG	5 cut(s)	349, 511, 761, 973, 1023
NlaIV	GGNNCC	1 cut(s)	904
PagI	TCATGA	1 cut(s)	969
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	4 cut(s)	20, 134, 573, 973
PflMI	CCANNNNNTGG	1 cut(s)	951
PkrI	GCNGC	1 cut(s)	1031
PleI	GAGTC	2 cut(s)	325, 617
PpsI	GAGTC	2 cut(s)	325, 617
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	904
PspPI	GGNCC	1 cut(s)	903
PsuI	RGATCY	2 cut(s)	246, 804
RsaI	GTAC	2 cut(s)	726, 880
RsaNI	GTAC	2 cut(s)	725, 879
SaqAI	TTAA	3 cut(s)	291, 300, 980
SatI	GCNGC	1 cut(s)	1030
Sau3AI	GATC	4 cut(s)	246, 494, 546, 804
Sau96I	GGNCC	1 cut(s)	903
SchI	GAGTC	2 cut(s)	326, 618
ScrFI	CCNGG	2 cut(s)	283, 465
SduI	GDGCHC	2 cut(s)	46, 160
SfaNI	GCATC	4 cut(s)	295, 347, 808, 823
SinI	GGWCC	1 cut(s)	903
SmlI	CTYRAG	2 cut(s)	299, 837
SmoI	CTYRAG	2 cut(s)	299, 837
Sse9I	AATT	8 cut(s)	84, 198, 514, 551, 648, 744, 774, 981
SsiI	CCGC	3 cut(s)	108, 222, 364
SspI	AATATT	1 cut(s)	687
SspMI	CTAG	3 cut(s)	422, 630, 1033
StyD4I	CCNGG	2 cut(s)	281, 463
StyI	CCWWGG	1 cut(s)	1019
TaaI	ACNGT	3 cut(s)	619, 766, 883
TaqI	TCGA	6 cut(s)	69, 183, 320, 549, 813, 875
TasI	AATT	8 cut(s)	84, 198, 514, 551, 648, 744, 774, 981
TatI	WGTACW	1 cut(s)	878
TfiI	GAWTC	4 cut(s)	20, 134, 573, 973
Tru1I	TTAA	3 cut(s)	291, 300, 980
Tru9I	TTAA	3 cut(s)	291, 300, 980
TscAI	CASTG	2 cut(s)	37, 151
TseI	GCWGC	1 cut(s)	1029
TspDTI	ATGAA	9 cut(s)	12, 17, 126, 362, 399, 507, 518, 597, 654
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	37, 151
Van91I	CCANNNNNTGG	1 cut(s)	951
Vha464I	CTTAAG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	903
XapI	RAATTY	3 cut(s)	514, 551, 744
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	3 cut(s)	422, 630, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.