Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012643

Physical Location & Seq

Genomic Coordinates Forward (+)

76884908 .. 76888585

Gene Structure 3678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG558400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAACGACCTGCTTACGGATTCATTTGTCAGTGAGGCAAGTGCTCAGCCTTCCGGAACAAATGATATCGAAATGGGAAGGCCAATTCCCCATAGCGTGTCTGATGGCGGAATGGATAGTTTCAACAAGCAGATCCAAGAGGTTGAGAAACAGGTGGAAAAGCTTTCCGGGCTTCTTAAAAAACTTAAGGATGCGAATGAGGAGTCGAAGGCTGTTACAAAAGCATCTGCCATGAAAGCAATCAAAAAGCGGATGGAAAAAGATATTGATGAAGTGGGAAAGATTGCCCGTGGTGTCAAAGGAAAACTAGAAGCAATAAGCAAAGATAACTTAGCCAACCGACAGAAGCCTGGATGTGAGAAGGGAACAGGTGTTGACAGATCAAGGATGAACATGACAAATTCATTGACGAAAAAGTTTAGGGAGATAATGATCGAATTTCAGACCCTTAGACAAAGAATCCAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTCATTACAGTTACAGGAACTAGACCAGATGAAGAGACAATTGACAATCTAATAGAAACTGGAAATAGTGAGCAAATATTCCAGAAGGCAGTCCAAGAACAGGGACGAGGACAGGTACTAAATACTTTGGAAGAAATTCAAGAGAGGCATGACACCGTAAAAGAAATTGAGAAGAAGCTTCTTGACTTGCATCAGATCTACCTCGATATGGCAGTATTGGTTGATGCTCAAGGAGAGGTTTTAGATAACATTGAAACTCAGGTTTCGAGTACAGTTGATTATATGCAATCTGGGACCACTCAACTTCAAAATGCAAAGAAACTCCAGAAGAACTCCAGAAAATGGATGTGCATTGCCATCATGATTCTTTTAATTATAGTAGCTGTTATAGTTGTCGGTGTCCTCAAACCATGGAAAAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

306

Amino Acids

34.46

Weight (kDa)

6.4

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	37 - 196	1.4e-51	Syntaxin
SNARE	PF05739	244 - 296	3.9e-17	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43430 FvH4_6g43430 FvH4_6g43430 FvH4_6g43430
malus_domestica	MD09G1106700.v1.1
prunus_persica	Prupe.3G218900_v2.0.a1 Prupe.3G218900_v2.0.a1
pyrus_communis	pycom09g02930 pycom17g09110
rosa_chinensis	RchiOBHm_Chr2g0159801
rosa_laevigata	RLG00000021182
rosa_multiflora	Rmu_sc0002508.1_g000006 Rmu_sc0016393.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090230
rosa_rugosa	Rorug02G0478700 Rorug02G0478800
rosa_samantha	Rh2BG558400 Rh2DG567500
rosa_wichuraiana	Rw2G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	837
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	2 cut(s)	108, 250
AclWI	GGATC	1 cut(s)	127
AcsI	RAATTY	3 cut(s)	400, 437, 630
AfaI	GTAC	2 cut(s)	612, 766
AfiI	CCNNNNNNNGG	4 cut(s)	16, 595, 703, 837
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	124, 635, 749, 803
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	4 cut(s)	163, 673, 878, 918
AluI	AGCT	4 cut(s)	163, 673, 878, 918
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	127
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	915
ApoI	RAATTY	3 cut(s)	400, 437, 630
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	1 cut(s)	630
AspS9I	GGNCC	1 cut(s)	789
AsuC2I	CCSGG	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	789
BarI	GAAGNNNNNNTAC	2 cut(s)	484, 516
Bbv12I	GWGCWC	1 cut(s)	46
BccI	CCATC	3 cut(s)	98, 247, 860
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	3 cut(s)	308, 516, 919
BfrI	CTTAAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	1 cut(s)	690
BisI	GCNGC	1 cut(s)	916
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	917
Bme1390I	CCNGG	2 cut(s)	169, 351
Bme18I	GGWCC	1 cut(s)	789
BmgT120I	GGNCC	1 cut(s)	789
BmiI	GGNNCC	1 cut(s)	790
BmrFI	CCNGG	2 cut(s)	169, 351
BmsI	GCATC	4 cut(s)	181, 233, 694, 709
BpmI	CTGGAG	2 cut(s)	803, 814
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	169
BsaBI	GATNNNNATC	2 cut(s)	431, 471
BsaJI	CCNNGG	2 cut(s)	289, 905
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 595, 703, 837
Bse1I	ACTGG	1 cut(s)	559
Bse3DI	GCAATG	1 cut(s)	846
Bse8I	GATNNNNATC	2 cut(s)	431, 471
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	289, 905
BseGI	GGATG	5 cut(s)	196, 258, 359, 393, 846
BseJI	GATNNNNATC	2 cut(s)	431, 471
BseLI	CCNNNNNNNGG	4 cut(s)	16, 595, 703, 837
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	2 cut(s)	59, 767
BseNI	ACTGG	1 cut(s)	559
BseRI	GAGGAG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	54, 168
BslFI	GGGAC	2 cut(s)	612, 802
BslI	CCNNNNNNNGG	4 cut(s)	16, 595, 703, 837
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	2 cut(s)	612, 802
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	4 cut(s)	132, 380, 432, 690
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	905
BspACI	CCGC	2 cut(s)	108, 250
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	58, 766
BspEI	TCCGGA	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	1 cut(s)	790
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	127
BspTI	CTTAAG	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	846
BsrI	ACTGG	1 cut(s)	559
BssECI	CCNNGG	2 cut(s)	289, 905
BssMI	GATC	4 cut(s)	132, 380, 432, 690
BssT1I	CCWWGG	1 cut(s)	905
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	505, 652, 769
Bst6I	CTCTTC	2 cut(s)	487, 522
BstAFI	CTTAAG	1 cut(s)	185
BstDEI	CTNAG	4 cut(s)	45, 331, 449, 753
BstDSI	CCRYGG	2 cut(s)	289, 905
BstF5I	GGATG	5 cut(s)	196, 258, 359, 393, 846
BstKTI	GATC	4 cut(s)	135, 383, 435, 693
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	4 cut(s)	132, 380, 432, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 236
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	167, 349
BstX2I	RGATCY	2 cut(s)	132, 690
BstYI	RGATCY	2 cut(s)	132, 690
BsuRI	GGCC	1 cut(s)	82
BtgI	CCRYGG	2 cut(s)	289, 905
BtsCI	GGATG	5 cut(s)	196, 258, 359, 393, 846
BtsIMutI	CAGTG	1 cut(s)	37
BveI	ACCTGC	1 cut(s)	18
CciI	TCATGA	1 cut(s)	855
Cfr13I	GGNCC	1 cut(s)	789
Csp6I	GTAC	2 cut(s)	611, 765
CviAII	CATG	5 cut(s)	232, 394, 644, 856, 906
CviQI	GTAC	2 cut(s)	611, 765
DdeI	CTNAG	4 cut(s)	45, 331, 449, 753
DpnI	GATC	4 cut(s)	134, 382, 434, 692
DpnII	GATC	4 cut(s)	132, 380, 432, 690
Eam1104I	CTCTTC	2 cut(s)	487, 522
EarI	CTCTTC	2 cut(s)	487, 522
EciI	GGCGGA	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	905
Eco32I	GATATC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	789
EcoRII	CCWGG	1 cut(s)	349
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	905
ErhI	CCWWGG	1 cut(s)	905
FaeI	CATG	5 cut(s)	235, 397, 647, 859, 909
FaqI	GGGAC	2 cut(s)	612, 802
FatI	CATG	5 cut(s)	231, 393, 643, 855, 905
Fnu4HI	GCNGC	1 cut(s)	916
FokI	GGATG	5 cut(s)	203, 265, 366, 400, 853
Fsp4HI	GCNGC	1 cut(s)	916
FspBI	CTAG	3 cut(s)	308, 516, 919
GluI	GCNGC	1 cut(s)	916
GsuI	CTGGAG	2 cut(s)	803, 814
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	54, 168
Hin1II	CATG	5 cut(s)	235, 397, 647, 859, 909
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	2 cut(s)	161, 671
HinfI	GANTC	5 cut(s)	20, 203, 459, 495, 859
HpaII	CCGG	2 cut(s)	54, 168
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	103, 444, 690
Hpy188III	TCNNGA	8 cut(s)	54, 476, 577, 635, 677, 820, 831, 856
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	5 cut(s)	60, 72, 202, 355, 574
HpyCH4III	ACNGT	3 cut(s)	505, 652, 769
HpyCH4V	TGCA	4 cut(s)	685, 781, 809, 846
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 236
HpyF3I	CTNAG	4 cut(s)	45, 331, 449, 753
Hsp92II	CATG	5 cut(s)	235, 397, 647, 859, 909
Kpn2I	TCCGGA	1 cut(s)	53
Kzo9I	GATC	4 cut(s)	132, 380, 432, 690
LweI	GCATC	4 cut(s)	181, 233, 694, 709
MaeI	CTAG	3 cut(s)	308, 516, 919
MaeIII	GTNAC	2 cut(s)	214, 505
MalI	GATC	4 cut(s)	134, 382, 434, 692
MboI	GATC	4 cut(s)	132, 380, 432, 690
MboII	GAAGA	5 cut(s)	504, 539, 638, 679, 835
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	2 cut(s)	132, 690
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	7 cut(s)	84, 400, 437, 534, 630, 660, 867
MlyI	GAGTC	2 cut(s)	212, 504
MnlI	CCTC	9 cut(s)	28, 133, 193, 472, 596, 633, 707, 724, 908
MroI	TCCGGA	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	3 cut(s)	177, 186, 866
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	2 cut(s)	54, 168
MspR9I	CCNGG	2 cut(s)	169, 351
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	169, 236
NciI	CCSGG	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	905
NdeII	GATC	4 cut(s)	132, 380, 432, 690
NlaIII	CATG	5 cut(s)	235, 397, 647, 859, 909
NlaIV	GGNNCC	1 cut(s)	790
PagI	TCATGA	1 cut(s)	855
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	3 cut(s)	20, 459, 859
PflMI	CCANNNNNTGG	1 cut(s)	837
PkrI	GCNGC	1 cut(s)	917
PleI	GAGTC	2 cut(s)	211, 503
PpsI	GAGTC	2 cut(s)	211, 503
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	790
PspPI	GGNCC	1 cut(s)	789
PsuI	RGATCY	2 cut(s)	132, 690
RsaI	GTAC	2 cut(s)	612, 766
RsaNI	GTAC	2 cut(s)	611, 765
SaqAI	TTAA	3 cut(s)	177, 186, 866
SatI	GCNGC	1 cut(s)	916
Sau3AI	GATC	4 cut(s)	132, 380, 432, 690
Sau96I	GGNCC	1 cut(s)	789
SchI	GAGTC	2 cut(s)	212, 504
ScrFI	CCNGG	2 cut(s)	169, 351
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	4 cut(s)	181, 233, 694, 709
SinI	GGWCC	1 cut(s)	789
SmlI	CTYRAG	2 cut(s)	185, 723
SmoI	CTYRAG	2 cut(s)	185, 723
Sse9I	AATT	7 cut(s)	84, 400, 437, 534, 630, 660, 867
SsiI	CCGC	2 cut(s)	108, 250
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	3 cut(s)	308, 516, 919
StyD4I	CCNGG	2 cut(s)	167, 349
StyI	CCWWGG	1 cut(s)	905
TaaI	ACNGT	3 cut(s)	505, 652, 769
TaqI	TCGA	5 cut(s)	69, 206, 435, 699, 761
TasI	AATT	7 cut(s)	84, 400, 437, 534, 630, 660, 867
TatI	WGTACW	1 cut(s)	764
TfiI	GAWTC	3 cut(s)	20, 459, 859
Tru1I	TTAA	3 cut(s)	177, 186, 866
Tru9I	TTAA	3 cut(s)	177, 186, 866
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	915
TspDTI	ATGAA	8 cut(s)	12, 17, 248, 285, 393, 404, 483, 540
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	837
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	789
XapI	RAATTY	3 cut(s)	400, 437, 630
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	3 cut(s)	308, 516, 919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.