Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012643

Physical Location & Seq

Genomic Coordinates Forward (+)

60995370 .. 60998915

Gene Structure 3546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0478800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGAATTCTTTGCAGTAAGACTTCTCGAAGAATTTCGCTATCAGCTTAATCAAGATCAGGTTGTTGCTGTTCTAGACCAGAGTTTCATTAATAGGCAAAAGATAAAGACAGAGGAACCAGAGAAGGCACTAAAAGAGTTTTATGGCATTCTCGAAAATCTTGTTTTCAAGTGCAAAGGACATAAATTTGCTGATGAGATTCAAAAGAAGATGACAATTATGATTGTTGGCGGGGATGTTTTTGCTAACTGGTTTATGGGAGTTATCTGTGATCTAAAATTGCCAGGCTCACCCTCCATTGTTCCTACAGCATTGGGAATCAAAGCTAACATTGCAAGTTCATTTGGATGGGAGTTTGATGCTGATAAAGTACCAGTGAACAAGATTTTGGGGATGGTACTAAATCATGCAAAGCAGATGAAAACAGACAGCTGGCATATCCTCATTAAGGTGAAGGCGACAGCTCATCAACAAATACCCTATTGTTTGCATTTATTTCATGAAGCAGATATGGAAAATGAGGATAGTCCGACATTAATATACAGAGGATTTTGGAACTACTTCAGCTTGGGTGCCGAGTTTAGGACAGTCAATATGCTTGATGCAATATCAGACCATATTGATGACCTTGTTTTTGGCAATGCAAAGCTCAAATGCAAAAATGAATATATCAAAAATCCTTGTATCTTCATGGGAAGAGTCGATGACCCAAGGTTGTATGGAGCTTCCCGCTTTCGTCATACTTCAAGGACCTTAAGCATCGCACTTGCAAAAGTAGAGGTTTTGAAACATCATGGTGATCAGTGGGAGGTGCTTAGCATTCCTAGTAGCATCAGATCAATTGTTTGTCTTAACTTGCCTAGTTTTCTTGGTGGGCTAACTCCTTGGACGACAGCAGATATAAAGAAAGATCAAACAAGAGGCCTGTCCTCATCTTTCATAGATGATGGATATCTTGAAATTATTGGTTCAAAAGATGATTTACTTTCCCAGAAGAAAAGGTGGATTCGCCTTGATCAGGTAAGAGAAATTCGCTTCAAGTTTATTGAGGATTCAGTTGAGGTTGTAAACATGATGATCGATGGTGTACTGTGGAAAAAAACCCCACTTGATGGTTTAGTCGAGATTGAAATCTCTTACAACTGTCAAGTTAACATTCTTGTTAAACAAGATTACTCAGCAAGAAGTATCCATGACTCATCGCAACCCTGTGGGTCAGAAACTGCTGATGATGAAAATGCTAAAGGACGTAAGAAGAGTGGTGGAGCAAGCACATCAAGTTTCTTCATTGATGTTAATGAGCTTGAAGAGAAATCTCAAGGACATAAAAAAATTGGTGCAGCAAGCAGCTTTAAAATCTTTGAGGAGGATGACATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04721 map04130 map04721

Pfam Domains

Protein Families

SNARE Syntaxin

Protein Analysis

460

Amino Acids

52.2

Weight (kDa)

6.0

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_acc	PF00609	225 - 362	4.4e-10	Diacylglycerol kinase accessory domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43430 FvH4_6g43430 FvH4_6g43430 FvH4_6g43430
malus_domestica	MD09G1106700.v1.1
prunus_persica	Prupe.3G218900_v2.0.a1 Prupe.3G218900_v2.0.a1
pyrus_communis	pycom09g02930 pycom17g09110
rosa_chinensis	RchiOBHm_Chr2g0159801
rosa_laevigata	RLG00000021182
rosa_multiflora	Rmu_sc0002508.1_g000006 Rmu_sc0016393.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090230
rosa_rugosa	Rorug02G0478700 Rorug02G0478800
rosa_samantha	Rh2BG558400 Rh2DG567500
rosa_wichuraiana	Rw2G045090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	572
AccB7I	CCANNNNNTGG	1 cut(s)	1112
AciI	CCGC	2 cut(s)	231, 730
AcsI	RAATTY	4 cut(s)	5, 32, 185, 1029
AcuI	CTGAAG	1 cut(s)	547
AfaI	GTAC	3 cut(s)	372, 399, 1089
AfiI	CCNNNNNNNGG	4 cut(s)	448, 582, 1018, 1112
AflII	CTTAAG	1 cut(s)	754
AgsI	TTSAA	9 cut(s)	169, 203, 747, 787, 959, 972, 1039, 1130, 1307
AjnI	CCWGG	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	9 cut(s)	46, 326, 432, 464, 567, 649, 725, 1303, 1350
AluI	AGCT	9 cut(s)	46, 326, 432, 464, 567, 649, 725, 1303, 1350
AlwNI	CAGNNNCTG	1 cut(s)	1223
AoxI	GGCC	1 cut(s)	922
ApeKI	GCWGC	2 cut(s)	1340, 1347
ApoI	RAATTY	4 cut(s)	5, 32, 185, 1029
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
AseI	ATTAAT	3 cut(s)	90, 536, 1377
Asp700I	GAANNNNTTC	2 cut(s)	33, 560
AspS9I	GGNCC	1 cut(s)	750
AsuHPI	GGTGA	3 cut(s)	282, 463, 809
AvaII	GGWCC	1 cut(s)	750
BanI	GGYRCC	1 cut(s)	572
BbvI	GCAGC	2 cut(s)	1352, 1359
BccI	CCATC	5 cut(s)	342, 388, 941, 1076, 1106
BciT130I	CCWGG	1 cut(s)	285
BciVI	GTATCC	1 cut(s)	1199
BclI	TGATCA	2 cut(s)	799, 1015
BfaI	CTAG	3 cut(s)	74, 825, 861
BfmI	CTRYAG	1 cut(s)	306
BfrI	CTTAAG	1 cut(s)	754
BfuI	GTATCC	1 cut(s)	1199
BisI	GCNGC	2 cut(s)	1341, 1348
BlpI	GCTNAGC	1 cut(s)	815
BlsI	GCNGC	2 cut(s)	1342, 1349
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	750
BmgT120I	GGNCC	1 cut(s)	750
BmiI	GGNNCC	2 cut(s)	117, 574
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	4 cut(s)	349, 592, 768, 840
Bpu1102I	GCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	1302
Bsa29I	ATCGAT	1 cut(s)	1080
BsaBI	GATNNNNATC	2 cut(s)	951, 1130
BsaJI	CCNNGG	2 cut(s)	710, 884
Bsc4I	CCNNNNNNNGG	4 cut(s)	448, 582, 1018, 1112
Bse1I	ACTGG	2 cut(s)	254, 374
Bse3DI	GCAATG	2 cut(s)	330, 646
Bse8I	GATNNNNATC	2 cut(s)	951, 1130
BseBI	CCWGG	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	1080
BseDI	CCNNGG	2 cut(s)	710, 884
BseGI	GGATG	4 cut(s)	241, 353, 399, 1375
BseJI	GATNNNNATC	2 cut(s)	951, 1130
BseLI	CCNNNNNNNGG	4 cut(s)	448, 582, 1018, 1112
BseMI	GCAATG	2 cut(s)	330, 646
BseMII	CTCAG	1 cut(s)	1191
BseNI	ACTGG	2 cut(s)	254, 374
BseRI	GAGGAG	1 cut(s)	1379
BseXI	GCAGC	2 cut(s)	1352, 1359
BsgI	GTGCAG	1 cut(s)	1359
BshFI	GGCC	1 cut(s)	924
BshNI	GGYRCC	1 cut(s)	572
BshVI	ATCGAT	1 cut(s)	1080
BslI	CCNNNNNNNGG	4 cut(s)	448, 582, 1018, 1112
BsmI	GAATGC	2 cut(s)	147, 819
BsnI	GGCC	1 cut(s)	924
Bsp143I	GATC	7 cut(s)	55, 271, 799, 836, 910, 1015, 1077
Bsp1720I	GCTNAGC	1 cut(s)	815
BspACI	CCGC	2 cut(s)	231, 730
BspANI	GGCC	1 cut(s)	924
BspCNI	CTCAG	1 cut(s)	1190
BspDI	ATCGAT	1 cut(s)	1080
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	117, 574
BspT107I	GGYRCC	1 cut(s)	572
BspTI	CTTAAG	1 cut(s)	754
BsrDI	GCAATG	2 cut(s)	330, 646
BsrI	ACTGG	2 cut(s)	254, 374
BssECI	CCNNGG	2 cut(s)	710, 884
BssMI	GATC	7 cut(s)	55, 271, 799, 836, 910, 1015, 1077
BssT1I	CCWWGG	2 cut(s)	710, 884
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	3 cut(s)	589, 1092, 1145
Bst6I	CTCTTC	3 cut(s)	691, 1250, 1302
BstAFI	CTTAAG	1 cut(s)	754
BstC8I	GCNNGC	3 cut(s)	434, 1270, 1345
BstDEI	CTNAG	2 cut(s)	815, 1177
BstENI	CCTNNNNNAGG	2 cut(s)	446, 1016
BstF5I	GGATG	4 cut(s)	241, 353, 399, 1375
BstKTI	GATC	7 cut(s)	58, 274, 802, 839, 913, 1018, 1080
BstMBI	GATC	7 cut(s)	55, 271, 799, 836, 910, 1015, 1077
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	1352, 1359
Bsu15I	ATCGAT	1 cut(s)	1080
BsuI	GTATCC	1 cut(s)	1199
BsuRI	GGCC	1 cut(s)	924
BsuTUI	ATCGAT	1 cut(s)	1080
BtgZI	GCGATG	2 cut(s)	745, 1185
BtsCI	GGATG	4 cut(s)	241, 353, 399, 1375
BtsIMutI	CAGTG	2 cut(s)	381, 809
Cac8I	GCNNGC	3 cut(s)	434, 1270, 1345
CaiI	CAGNNNCTG	1 cut(s)	1223
CciI	TCATGA	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	750
ClaI	ATCGAT	1 cut(s)	1080
Csp6I	GTAC	3 cut(s)	371, 398, 1088
CviAII	CATG	6 cut(s)	407, 500, 691, 794, 1072, 1193
CviQI	GTAC	3 cut(s)	371, 398, 1088
DdeI	CTNAG	2 cut(s)	815, 1177
DpnI	GATC	7 cut(s)	57, 273, 801, 838, 912, 1017, 1079
DpnII	GATC	7 cut(s)	55, 271, 799, 836, 910, 1015, 1077
DraI	TTTAAA	1 cut(s)	1354
Eam1104I	CTCTTC	3 cut(s)	691, 1250, 1302
EarI	CTCTTC	3 cut(s)	691, 1250, 1302
Eco130I	CCWWGG	2 cut(s)	710, 884
Eco147I	AGGCCT	1 cut(s)	924
Eco32I	GATATC	1 cut(s)	953
Eco47I	GGWCC	1 cut(s)	750
Eco57I	CTGAAG	1 cut(s)	547
EcoNI	CCTNNNNNAGG	2 cut(s)	446, 1016
EcoO109I	RGGNCCY	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	953
EcoT14I	CCWWGG	2 cut(s)	710, 884
ErhI	CCWWGG	2 cut(s)	710, 884
FaeI	CATG	6 cut(s)	410, 503, 694, 797, 1075, 1196
FatI	CATG	6 cut(s)	406, 499, 690, 793, 1071, 1192
FauI	CCCGC	2 cut(s)	224, 737
FbaI	TGATCA	2 cut(s)	799, 1015
Fnu4HI	GCNGC	2 cut(s)	1341, 1348
FokI	GGATG	3 cut(s)	248, 360, 406
Fsp4HI	GCNGC	2 cut(s)	1341, 1348
FspBI	CTAG	3 cut(s)	74, 825, 861
GluI	GCNGC	2 cut(s)	1341, 1348
HaeIII	GGCC	1 cut(s)	924
Hin1II	CATG	6 cut(s)	410, 503, 694, 797, 1075, 1196
HincII	GTYRAC	1 cut(s)	1153
HindII	GTYRAC	1 cut(s)	1153
HinfI	GANTC	6 cut(s)	199, 318, 699, 1006, 1052, 1196
HpaI	GTTAAC	1 cut(s)	1153
HphI	GGTGA	3 cut(s)	282, 463, 809
Hpy166II	GTNNAC	4 cut(s)	379, 1069, 1088, 1153
Hpy188I	TCNGA	4 cut(s)	531, 613, 836, 1219
Hpy188III	TCNNGA	7 cut(s)	26, 53, 74, 152, 500, 956, 1123
Hpy8I	GTNNAC	4 cut(s)	379, 1069, 1088, 1153
HpyAV	CCTTC	2 cut(s)	118, 448
HpyCH4III	ACNGT	3 cut(s)	589, 1092, 1145
HpyCH4IV	ACGT	1 cut(s)	1249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	2 cut(s)	815, 1177
HpySE526I	ACGT	1 cut(s)	1249
Hsp92II	CATG	6 cut(s)	410, 503, 694, 797, 1075, 1196
Ksp22I	TGATCA	2 cut(s)	799, 1015
KspAI	GTTAAC	1 cut(s)	1153
Kzo9I	GATC	7 cut(s)	55, 271, 799, 836, 910, 1015, 1077
LmnI	GCTCC	2 cut(s)	722, 1265
Lsp1109I	GCAGC	2 cut(s)	1352, 1359
LweI	GCATC	4 cut(s)	349, 592, 768, 840
MaeI	CTAG	3 cut(s)	74, 825, 861
MaeII	ACGT	1 cut(s)	1249
MalI	GATC	7 cut(s)	57, 273, 801, 838, 912, 1017, 1079
MboI	GATC	7 cut(s)	55, 271, 799, 836, 910, 1015, 1077
MboII	GAAGA	8 cut(s)	41, 220, 679, 708, 1006, 1267, 1276, 1319
MfeI	CAATTG	1 cut(s)	840
MlyI	GAGTC	2 cut(s)	708, 1190
MmeI	TCCRAC	1 cut(s)	554
MroXI	GAANNNNTTC	2 cut(s)	33, 560
MslI	CAYNNNNRTG	4 cut(s)	346, 449, 621, 795
MspA1I	CMGCKG	1 cut(s)	432
MspCI	CTTAAG	1 cut(s)	754
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	1 cut(s)	840
Mva1269I	GAATGC	2 cut(s)	147, 819
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	7 cut(s)	55, 271, 799, 836, 910, 1015, 1077
NlaIII	CATG	6 cut(s)	410, 503, 694, 797, 1075, 1196
NlaIV	GGNNCC	2 cut(s)	117, 574
NmeAIII	GCCGAG	1 cut(s)	601
PagI	TCATGA	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	924
PctI	GAATGC	2 cut(s)	147, 819
PdmI	GAANNNNTTC	2 cut(s)	33, 560
PfeI	GAWTC	4 cut(s)	199, 318, 1006, 1052
PflMI	CCANNNNNTGG	1 cut(s)	1112
PkrI	GCNGC	2 cut(s)	1342, 1349
PleI	GAGTC	2 cut(s)	707, 1190
PpsI	GAGTC	2 cut(s)	707, 1190
PpuMI	RGGWCCY	1 cut(s)	750
PshBI	ATTAAT	3 cut(s)	90, 536, 1377
Psp5II	RGGWCCY	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	117, 574
PspPI	GGNCC	1 cut(s)	750
PspPPI	RGGWCCY	1 cut(s)	750
PstNI	CAGNNNCTG	1 cut(s)	1223
PvuII	CAGCTG	1 cut(s)	432
RsaI	GTAC	3 cut(s)	372, 399, 1089
RsaNI	GTAC	3 cut(s)	371, 398, 1088
RseI	CAYNNNNRTG	4 cut(s)	346, 449, 621, 795
SatI	GCNGC	2 cut(s)	1341, 1348
Sau3AI	GATC	7 cut(s)	55, 271, 799, 836, 910, 1015, 1077
Sau96I	GGNCC	1 cut(s)	750
SchI	GAGTC	2 cut(s)	708, 1190
ScrFI	CCNGG	1 cut(s)	285
SfaNI	GCATC	4 cut(s)	349, 592, 768, 840
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	750
SmiMI	CAYNNNNRTG	4 cut(s)	346, 449, 621, 795
SmlI	CTYRAG	2 cut(s)	754, 1317
SmoI	CTYRAG	2 cut(s)	754, 1317
SseBI	AGGCCT	1 cut(s)	924
SsiI	CCGC	2 cut(s)	231, 730
SspMI	CTAG	3 cut(s)	74, 825, 861
StuI	AGGCCT	1 cut(s)	924
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	2 cut(s)	710, 884
TaaI	ACNGT	3 cut(s)	589, 1092, 1145
TaiI	ACGT	1 cut(s)	1252
TaqI	TCGA	5 cut(s)	27, 153, 702, 1080, 1122
TatI	WGTACW	1 cut(s)	1087
TfiI	GAWTC	4 cut(s)	199, 318, 1006, 1052
TscAI	CASTG	2 cut(s)	381, 809
TseI	GCWGC	2 cut(s)	1340, 1347
TspRI	CASTG	2 cut(s)	381, 809
Van91I	CCANNNNNTGG	1 cut(s)	1112
Vha464I	CTTAAG	1 cut(s)	754
VpaK11BI	GGWCC	1 cut(s)	750
VspI	ATTAAT	3 cut(s)	90, 536, 1377
XagI	CCTNNNNNAGG	2 cut(s)	446, 1016
XapI	RAATTY	4 cut(s)	5, 32, 185, 1029
XbaI	TCTAGA	1 cut(s)	73
XmnI	GAANNNNTTC	2 cut(s)	33, 560
XspI	CTAG	3 cut(s)	74, 825, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.