Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014465

Physical Location & Seq

Genomic Coordinates Reverse (-)

34538146 .. 34541208

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3063 bp

ATGCTTCACTGCCAGAGCTACAATTCCAGAGAATTAGGGCAAGAAAGTCTCCACAGCTCAATGCAAGGCCACACCTTTTCACCAAGTAAGCTTCAAAACCCCCAATCTAATTTCACTGCTAGGCCTGTTATAGGGTTTAATCTCACTCACCACAACCACACCTTAGCTAAAACCCAACAAAACCCTCTTCCAATTTCTCAAAATTGTACTTGTATTGTGAATTCAAGAGCCCAGAAGCAGAGTTCAAGTGGGTCTAGGGTTTATGTAGGGTTTAAGCTTCAGTGTCATTCGAAAGCTTTGGTCTTGCCCACTAAGGTTTCTTTAGTTAATGGTAAGAAGAAGAGGTATGGAGGCGTGTTGCCTTCGATTTTGAGGTCTTTGGAGAATGAAAACGATGTTGAAAAGACACTTGAGTCGTTTGGTGAGAGTCTGAGTGCGAAAGAGCAGACTGTGATTCTTAAAGAACAGAGGAGCTGGGAGAGGGTTCTTCGTGTTTTCGAGTGGTTTAAGTCACAGAAAGAGTATTTGCCCAATGTGATTCACTACAATGTGGTGCTTCGGGTGCTTGGTAGAGCTCAGAGGTGGGATGAATTGAGGCTGTGTTGGATTGAAATGGCGAAGAAGGGTGTACTGCCTACTAACAATACGTATTCGATGCTTGTTGATGTGTATGGGAAAGCAGGACTTGTGAAGGAGGCGCTGTTGTGGATTAAGCACATGAAACTAAGGGGGATGTTCCCGGATGAGGTTACAATGAATACGGTTGTTCGGGCATTGAAGAATGCAGAAGAGTTTGATAGGGCGGATAAGTTTTATAAGGACTGGTGTACGGGGAGGATTGAGCTTGATGACCTTGATTTGGATACTATGGGTGATTCTGTGGTTGGTTCTGTCTCTGAGCCTATTAGTTTTAAGCATTTCTTGTCAACTGAGCTTTTCAAGACTGGTGGGAGAGTTCCAACTTCGAAAATTATGACTTCAATGAATACAGAGAACTCTATTCAGAAACCACGACTTACATCTACGTATAATAGTTTGATTGATTTGTATGGAAAGGCAGGGCGTTTGAATGATGCGGCTAATGTGTTTGGAGATATGATGAAGTCTGGAGTTGCCATGGATGTTATTACTTTCAATACTATGATCTTTACTTGTGGAAGTCATGGGCATTTGTTGGAGGCTGAAGCTTTGCTTAATAAGATGGAAGAAAGGGGAATATCTCCTGATACAAGAACTTATAACATTTTTCTATCTCTTTATGCTGATATGGGGAACATTGATGCTGCTCTGGACTGCTACAGGAAGATCAGAGAGGTAGGTCTTTACCCAGATACTGTGTCTCACAGAACTATTCTTCATGTATTATGTGAAAGAAACATGATCAGAGATGTAGAGATTGTGATTGAGGATATGGAGAAATCCGGTGTCTCTATTAATGAGCATTCTCTTCCTGGCATCATCAAGTTGTATATTAATGAAGGACGGCTTGATCAGGCAAAGTTGCTTTATGAGAAATGTCAGTTAAACCGTGGGATTTCATCAAAGACGTGTGCAGCAATAATAGATGCATATGCTGAAAAGGGACTTTGGACTGAAGCGGAGGTTGTATTTTCTAGGAAGGGAGATTTAGGTGGACAGATGAAGGATATTGTGGAATATAATGTTATGATCAAAGCTTATGGCAAGGCAAAGCTTTATGATAAAGCTTTTTCTCTCTTCAGGGGCATGAAAAAGCATGGGACTTGGCCTGATGAGTGCACTTACAACTCTCTCATCCAAATGTTCTCAGGAGGTGATTTAGTGGACCGAGCAAGGGATCTTCTAACAGAAATGCAGGAAACTGGTCTGAAGCCGCAATCTCTAACCTTTTCTGCTCTTATTGCCTGCTATGCTCGCCTTGGCCAGCTTTCAGATGCAGTTGATGTGTACCAAGATATGGTAAAGTCAGGAACAAAGCCAAATGAGTTTGTGTATGGTTCTTTAATTAATGGATTTGCTGAAACTGGCAGAGTTGAAGAAGCACTGAAGTATTTTCACCTCATGGAAGAATCAGGGATTTCTGCAAATCAAATAGTTCTTACATCTCTGATAAAGGCGTATGGTAAGGCGGGGAGCCATAAGGGAGCAGAAGTGTTGTATGAGAGATTGAAAGGTTTTGATGGTGGCCCAGATGTTGTTGCATCTAACAGTATGATAAATCTGTATGCAGATCTTGGGATGGTATCTGAAGCCAAATTGATTTTCGAAAATTTGAGAGCAAAGGGTTGGGCTGATGAGATAGCATTTGCAACCATGATGTATCTTTACAAGAGCATGGGCATGCTTGATGAAGCCATTGATGTAGCAGATGAAATGAAAGAATCGGGTTTAATAAGGGACTGTGCTTCATTTAACAAGGTGATGTCATGCTATGCCATTAACGGTCAGCTACGTGAATGTGCTGAATTGTTGCACGAGATGGTAACTCGGAAACTGTTGCTTGACAGTGGAACTTGTAATGTATTGCTCACTGTATTGAGAAAAGGTGGGATTCCCCTTGAAGCTGTAACCCAGCTAGAGTCATCTTACCAGGAAGGGAAACCTTACTCTAGACAAGCTATCATCACCTCTGTGTTCTCGCTGGTTGGTATGCATAGTTTGGCGCTCGAGTCCTGTGAAACATTCACACAAGCTGACATAAATCTTGATTCGTCTCTCTACAACGTTGCAATATATGCTTATGGGGCAGCTGGGGAGATTGACAAGGCTCTGACCATATTCATGAGAATGCAGGATGAAGGTGTGGAACCAGACATTGTAACACATATTTTCCTAGTAGGTTGTTATGGAAAAGCAGGTATGGTAGAAGGAGTGAAGCGAATTTACAGCCAGCTGAAATACGAAGAGATAGAGCCCAATCCGTCCTTGTTCAGAGCTGTTATAGATGCCTATACAGATGCCAATAGGCATGACCTTGCCAAATTGGTTAAGCAAGACAGGAAATATGCATATGACTTGGAGCATCATGTATATCCCGAAACTAAAGATGATTTTGATGAAACCACTTCAGAGTATGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1021

Amino Acids

114.6

Weight (kDa)

5.87

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	177 - 224	9.2e-08	PPR repeat family
PPR_2	PF13041	341 - 385	1e-11	PPR repeat family
PPR_1	PF12854	341 - 366	9.5e-06	PPR repeat
PPR	PF01535	341 - 371	4.7e-07	PPR repeat
PPR_long	PF17177	343 - 454	8.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	370 - 402	3.1e-06	PPR repeat
PPR_2	PF13041	374 - 420	2.1e-12	PPR repeat family
PPR_3	PF13812	397 - 455	1.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	409 - 456	2.2e-07	PPR repeat family
TPR_24	PF23276	516 - 646	1.7e-10	Fungal tetratrico peptide repeats
PPR_2	PF13041	548 - 595	5.2e-13	PPR repeat family
PPR_3	PF13812	549 - 596	1.7e-07	Pentatricopeptide repeat domain
PPR	PF01535	553 - 580	4.8e-07	PPR repeat
PPR_long	PF17177	565 - 681	1.3e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	583 - 632	1.2e-08	PPR repeat family
PPR_3	PF13812	607 - 665	2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	618 - 666	2e-11	PPR repeat family
PPR_3	PF13812	642 - 702	9.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	650 - 682	1e-05	PPR repeat
PPR	PF01535	657 - 686	6.8e-07	PPR repeat
PPR_2	PF13041	657 - 701	5.6e-07	PPR repeat family
TPR_24	PF23276	875 - 982	8.9e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	890 - 944	7.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	896 - 939	9.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73710
fragaria_vesca	FvH4_6g44930
malus_domestica	MD09G1091700.v1.1 MD17G1081600.v1.1
prunus_persica	Prupe.3G233300_v2.0.a1
pyrus_communis	pycom09g01730 pycom17g07990
rosa_chinensis	RchiOBHm_Chr2g0162121
rosa_laevigata	RLG00000021324
rosa_multiflora	Rmu_sc0004020.1_g000031
rosa_roxburghii	Rroxscaffold_2G00088280
rosa_rugosa	Rorug02G0494800
rosa_samantha	Rh2AG561300 Rh2BG574400 Rh2CG544500 Rh2DG584300
rosa_wichuraiana	Rw2G046480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	816, 1239
AasI	GACNNNNNNGTC	1 cut(s)	412
Acc36I	ACCTGC	1 cut(s)	2825
AccB7I	CCANNNNNTGG	1 cut(s)	1936
AciI	CCGC	5 cut(s)	803, 1076, 1598, 1853, 2108
AclI	AACGTT	1 cut(s)	2703
AclWI	GGATC	1 cut(s)	1824
AcoI	YGGCCR	1 cut(s)	1900
AcsI	RAATTY	3 cut(s)	220, 2248, 2859
AcuI	CTGAAG	8 cut(s)	263, 1203, 1614, 1702, 1868, 2045, 2247, 3030
AfaI	GTAC	4 cut(s)	208, 630, 829, 1928
AfiI	CCNNNNNNNGG	5 cut(s)	131, 745, 859, 1813, 1936
AflIII	ACRYGT	1 cut(s)	1547
AjiI	CACGTC	1 cut(s)	1548
AjnI	CCWGG	2 cut(s)	1450, 2568
AjuI	GAANNNNNNNTTGG	2 cut(s)	2225, 2257
AleI	CACNNNNGTG	1 cut(s)	2609
Alw21I	GWGCWC	2 cut(s)	577, 1760
Alw26I	GTCTC	5 cut(s)	53, 898, 1344, 1432, 2697
Alw44I	GTGCAC	1 cut(s)	1756
AlwI	GGATC	1 cut(s)	1824
AlwNI	CAGNNNCTG	1 cut(s)	1334
Ama87I	CYCGRG	1 cut(s)	2645
AoxI	GGCC	5 cut(s)	67, 122, 1745, 1900, 2164
ApaLI	GTGCAC	1 cut(s)	1756
ApeKI	GCWGC	3 cut(s)	1283, 1553, 2726
ApoI	RAATTY	3 cut(s)	220, 2248, 2859
AseI	ATTAAT	3 cut(s)	1434, 1473, 1986
AspLEI	GCGC	2 cut(s)	700, 2644
AspS9I	GGNCC	2 cut(s)	1804, 2165
AsuC2I	CCSGG	1 cut(s)	740
AsuHPI	GGTGA	8 cut(s)	72, 140, 434, 884, 1805, 2027, 2410, 2596
AsuII	TTCGAA	3 cut(s)	290, 965, 2244
AvaI	CYCGRG	1 cut(s)	2645
AvaII	GGWCC	1 cut(s)	1804
BaeGI	GKGCMC	1 cut(s)	1760
BalI	TGGCCA	1 cut(s)	1902
BanII	GRGCYC	3 cut(s)	232, 577, 2895
BarI	GAAGNNNNNNTAC	2 cut(s)	2846, 2878
BauI	CACGAG	1 cut(s)	2453
Bbv12I	GWGCWC	2 cut(s)	577, 1760
BbvI	GCAGC	3 cut(s)	1270, 1565, 2738
BccI	CCATC	4 cut(s)	1195, 2153, 2212, 2452
BceAI	ACGGC	1 cut(s)	1499
BciT130I	CCWGG	2 cut(s)	1452, 2570
BciVI	GTATCC	1 cut(s)	856
BclI	TGATCA	3 cut(s)	1380, 1489, 1668
BcnI	CCSGG	1 cut(s)	740
BcoDI	GTCTC	5 cut(s)	53, 898, 1344, 1432, 2697
BfaI	CTAG	6 cut(s)	120, 255, 1614, 2555, 2589, 2813
BfmI	CTRYAG	1 cut(s)	1297
BfoI	RGCGCY	2 cut(s)	701, 2645
BfuAI	ACCTGC	1 cut(s)	2825
BfuI	GTATCC	1 cut(s)	856
BglII	AGATCT	1 cut(s)	2209
BisI	GCNGC	5 cut(s)	1077, 1284, 1554, 1853, 2727
BlsI	GCNGC	5 cut(s)	1078, 1285, 1555, 1854, 2728
Bme1390I	CCNGG	3 cut(s)	740, 1452, 2570
Bme18I	GGWCC	1 cut(s)	1804
BmeT110I	CYCGRG	1 cut(s)	2645
BmgBI	CACGTC	1 cut(s)	1548
BmgT120I	GGNCC	2 cut(s)	1804, 2165
BmiI	GGNNCC	2 cut(s)	2114, 2787
BmrFI	CCNGG	3 cut(s)	740, 1452, 2570
BpmI	CTGGAG	1 cut(s)	1128
Bpu10I	CCTNAGC	1 cut(s)	163
Bpu14I	TTCGAA	3 cut(s)	290, 965, 2244
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	740
BsaAI	YACGTR	3 cut(s)	648, 1026, 2432
BsaJI	CCNNGG	3 cut(s)	1116, 1528, 1897
BsaWI	WCCGGW	1 cut(s)	1421
BsaXI	ACNNNNNCTCC	4 cut(s)	686, 716, 2115, 2145
Bsc4I	CCNNNNNNNGG	5 cut(s)	131, 745, 859, 1813, 1936
Bse1I	ACTGG	4 cut(s)	827, 949, 1846, 2008
BseBI	CCWGG	2 cut(s)	1452, 2570
BseDI	CCNNGG	3 cut(s)	1116, 1528, 1897
BseGI	GGATG	7 cut(s)	592, 738, 748, 1126, 1773, 2223, 2779
BseLI	CCNNNNNNNGG	5 cut(s)	131, 745, 859, 1813, 1936
BseMII	CTCAG	5 cut(s)	422, 590, 888, 921, 1800
BseNI	ACTGG	4 cut(s)	827, 949, 1846, 2008
BseRI	GAGGAG	1 cut(s)	484
BseSI	GKGCMC	1 cut(s)	1760
BseXI	GCAGC	3 cut(s)	1270, 1565, 2738
BseYI	CCCAGC	3 cut(s)	474, 2550, 2729
BsgI	GTGCAG	1 cut(s)	1572
BshFI	GGCC	5 cut(s)	69, 124, 1747, 1902, 2166
BsiHKAI	GWGCWC	2 cut(s)	577, 1760
BsiHKCI	CYCGRG	1 cut(s)	2645
BsiSI	CCGG	2 cut(s)	740, 1422
BslFI	GGGAC	3 cut(s)	1596, 1753, 2390
BslI	CCNNNNNNNGG	5 cut(s)	131, 745, 859, 1813, 1936
BsmAI	GTCTC	5 cut(s)	53, 898, 1344, 1432, 2697
BsmBI	CGTCTC	1 cut(s)	2697
BsmFI	GGGAC	3 cut(s)	1596, 1753, 2390
BsmI	GAATGC	3 cut(s)	787, 1441, 2772
BsnI	GGCC	5 cut(s)	69, 124, 1747, 1902, 2166
BsoBI	CYCGRG	1 cut(s)	2645
Bsp119I	TTCGAA	3 cut(s)	290, 965, 2244
Bsp1286I	GDGCHC	4 cut(s)	232, 577, 1760, 2895
Bsp143I	GATC	7 cut(s)	1143, 1305, 1380, 1489, 1668, 1816, 2209
Bsp19I	CCATGG	1 cut(s)	1116
BspACI	CCGC	5 cut(s)	803, 1076, 1598, 1853, 2108
BspANI	GGCC	5 cut(s)	69, 124, 1747, 1902, 2166
BspCNI	CTCAG	5 cut(s)	423, 589, 889, 922, 1799
BspHI	TCATGA	1 cut(s)	2760
BspLI	GGNNCC	2 cut(s)	2114, 2787
BspMI	ACCTGC	1 cut(s)	2825
BspPI	GGATC	1 cut(s)	1824
BspT104I	TTCGAA	3 cut(s)	290, 965, 2244
BsrI	ACTGG	4 cut(s)	827, 949, 1846, 2008
BssECI	CCNNGG	3 cut(s)	1116, 1528, 1897
BssMI	GATC	7 cut(s)	1143, 1305, 1380, 1489, 1668, 1816, 2209
BssSI	CACGAG	1 cut(s)	2453
BssT1I	CCWWGG	2 cut(s)	1116, 1897
Bst2BI	CACGAG	1 cut(s)	2453
Bst2UI	CCWGG	2 cut(s)	1452, 2570
Bst6I	CTCTTC	6 cut(s)	192, 335, 783, 1452, 1721, 2877
BstAPI	GCANNNNNTGC	1 cut(s)	2714
BstBAI	YACGTR	3 cut(s)	648, 1026, 2432
BstBI	TTCGAA	3 cut(s)	290, 965, 2244
BstC8I	GCNNGC	5 cut(s)	1885, 1894, 1904, 2321, 2870
BstDEI	CTNAG	8 cut(s)	163, 312, 431, 576, 725, 897, 930, 1786
BstDSI	CCRYGG	2 cut(s)	1116, 1528
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	7 cut(s)	592, 738, 748, 1126, 1773, 2223, 2779
BstH2I	RGCGCY	2 cut(s)	701, 2645
BstHHI	GCGC	2 cut(s)	700, 2644
BstKTI	GATC	7 cut(s)	1146, 1308, 1383, 1492, 1671, 1819, 2212
BstMAI	GTCTC	5 cut(s)	53, 898, 1344, 1432, 2697
BstMBI	GATC	7 cut(s)	1143, 1305, 1380, 1489, 1668, 1816, 2209
BstMWI	GCNNNNNNNGC	6 cut(s)	562, 1880, 1889, 1893, 2714, 2723
BstNI	CCWGG	2 cut(s)	1452, 2570
BstNSI	RCATGY	1 cut(s)	2323
BstSCI	CCNGG	3 cut(s)	738, 1450, 2568
BstSFI	CTRYAG	1 cut(s)	1297
BstSLI	GKGCMC	1 cut(s)	1760
BstSNI	TACGTA	2 cut(s)	648, 1026
BstV1I	GCAGC	3 cut(s)	1270, 1565, 2738
BstX2I	RGATCY	2 cut(s)	1816, 2209
BstYI	RGATCY	2 cut(s)	1816, 2209
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	5 cut(s)	69, 124, 1747, 1902, 2166
BtgI	CCRYGG	2 cut(s)	1116, 1528
BtrI	CACGTC	1 cut(s)	1548
BtsCI	GGATG	7 cut(s)	592, 738, 748, 1126, 1773, 2223, 2779
BtsI	GCAGTG	2 cut(s)	7, 114
BtsIMutI	CAGTG	6 cut(s)	7, 114, 287, 2021, 2491, 2508
BveI	ACCTGC	1 cut(s)	2825
Cac8I	GCNNGC	5 cut(s)	1885, 1894, 1904, 2321, 2870
CaiI	CAGNNNCTG	1 cut(s)	1334
CciI	TCATGA	1 cut(s)	2760
CfoI	GCGC	2 cut(s)	700, 2644
Cfr13I	GGNCC	2 cut(s)	1804, 2165
Csp6I	GTAC	4 cut(s)	207, 629, 828, 1927
CspCI	CAANNNNNGTGG	2 cut(s)	928, 963
CviQI	GTAC	4 cut(s)	207, 629, 828, 1927
DdeI	CTNAG	8 cut(s)	163, 312, 431, 576, 725, 897, 930, 1786
DpnI	GATC	7 cut(s)	1145, 1307, 1382, 1491, 1670, 1818, 2211
DpnII	GATC	7 cut(s)	1143, 1305, 1380, 1489, 1668, 1816, 2209
DrdI	GACNNNNNNGTC	1 cut(s)	412
DseDI	GACNNNNNNGTC	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	1900
Eam1104I	CTCTTC	6 cut(s)	192, 335, 783, 1452, 1721, 2877
EarI	CTCTTC	6 cut(s)	192, 335, 783, 1452, 1721, 2877
EciI	GGCGGA	1 cut(s)	818
Ecl136II	GAGCTC	1 cut(s)	575
Eco105I	TACGTA	2 cut(s)	648, 1026
Eco130I	CCWWGG	2 cut(s)	1116, 1897
Eco147I	AGGCCT	1 cut(s)	124
Eco24I	GRGCYC	3 cut(s)	232, 577, 2895
Eco47I	GGWCC	1 cut(s)	1804
Eco53kI	GAGCTC	1 cut(s)	575
Eco57I	CTGAAG	8 cut(s)	263, 1203, 1614, 1702, 1868, 2045, 2247, 3030
Eco88I	CYCGRG	1 cut(s)	2645
EcoICRI	GAGCTC	1 cut(s)	575
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	1450, 2568
EcoT14I	CCWWGG	2 cut(s)	1116, 1897
EcoT22I	ATGCAT	3 cut(s)	1570, 2634, 2989
EcoT38I	GRGCYC	3 cut(s)	232, 577, 2895
ErhI	CCWWGG	2 cut(s)	1116, 1897
Esp3I	CGTCTC	1 cut(s)	2697
FalI	AAGNNNNNCTT	8 cut(s)	669, 701, 905, 937, 1176, 1208, 1470, 1502
FaqI	GGGAC	3 cut(s)	1596, 1753, 2390
FauI	CCCGC	1 cut(s)	2101
FauNDI	CATATG	2 cut(s)	1570, 2989
FbaI	TGATCA	3 cut(s)	1380, 1489, 1668
Fnu4HI	GCNGC	5 cut(s)	1077, 1284, 1554, 1853, 2727
FokI	GGATG	7 cut(s)	599, 745, 755, 1133, 1760, 2230, 2786
FriOI	GRGCYC	3 cut(s)	232, 577, 2895
Fsp4HI	GCNGC	5 cut(s)	1077, 1284, 1554, 1853, 2727
FspBI	CTAG	6 cut(s)	120, 255, 1614, 2555, 2589, 2813
GlaI	GCGC	2 cut(s)	699, 2643
GluI	GCNGC	5 cut(s)	1077, 1284, 1554, 1853, 2727
GsaI	CCCAGC	3 cut(s)	478, 2554, 2733
GsuI	CTGGAG	1 cut(s)	1128
HaeII	RGCGCY	2 cut(s)	701, 2645
HaeIII	GGCC	5 cut(s)	69, 124, 1747, 1902, 2166
HapII	CCGG	2 cut(s)	740, 1422
HhaI	GCGC	2 cut(s)	700, 2644
Hin6I	GCGC	2 cut(s)	698, 2642
HinP1I	GCGC	2 cut(s)	698, 2642
HincII	GTYRAC	1 cut(s)	927
HindII	GTYRAC	1 cut(s)	927
HindIII	AAGCTT	7 cut(s)	89, 275, 294, 1185, 1674, 1691, 1704
HpaII	CCGG	2 cut(s)	740, 1422
HphI	GGTGA	8 cut(s)	72, 140, 434, 884, 1805, 2027, 2410, 2596
Hpy166II	GTNNAC	7 cut(s)	629, 828, 927, 1634, 1758, 1804, 1927
Hpy8I	GTNNAC	7 cut(s)	629, 828, 927, 1634, 1758, 1804, 1927
HpyAV	CCTTC	9 cut(s)	372, 616, 685, 1472, 1612, 1636, 2567, 2771, 2840
HpyCH4IV	ACGT	5 cut(s)	647, 1025, 1547, 2431, 2703
HpyF10VI	GCNNNNNNNGC	6 cut(s)	562, 1880, 1889, 1893, 2714, 2723
HpyF3I	CTNAG	8 cut(s)	163, 312, 431, 576, 725, 897, 930, 1786
HpySE526I	ACGT	5 cut(s)	647, 1025, 1547, 2431, 2703
HspAI	GCGC	2 cut(s)	698, 2642
Ksp22I	TGATCA	3 cut(s)	1380, 1489, 1668
Kzo9I	GATC	7 cut(s)	1143, 1305, 1380, 1489, 1668, 1816, 2209
LmnI	GCTCC	4 cut(s)	471, 2112, 2123, 2998
Lsp1109I	GCAGC	3 cut(s)	1270, 1565, 2738
MaeI	CTAG	6 cut(s)	120, 255, 1614, 2555, 2589, 2813
MaeII	ACGT	5 cut(s)	647, 1025, 1547, 2431, 2703
MaeIII	GTNAC	5 cut(s)	510, 748, 2461, 2545, 2797
MalI	GATC	7 cut(s)	1145, 1307, 1382, 1491, 1670, 1818, 2211
MboI	GATC	7 cut(s)	1143, 1305, 1380, 1489, 1668, 1816, 2209
MflI	RGATCY	2 cut(s)	1816, 2209
MhlI	GDGCHC	4 cut(s)	232, 577, 1760, 2895
MlsI	TGGCCA	1 cut(s)	1902
MluNI	TGGCCA	1 cut(s)	1902
MlyI	GAGTC	4 cut(s)	422, 436, 2567, 2657
MmeI	TCCRAC	3 cut(s)	584, 983, 1155
Mox20I	TGGCCA	1 cut(s)	1902
Mph1103I	ATGCAT	3 cut(s)	1570, 2634, 2989
MscI	TGGCCA	1 cut(s)	1902
MslI	CAYNNNNRTG	6 cut(s)	546, 1778, 2318, 2609, 2759, 2765
Msp20I	TGGCCA	1 cut(s)	1902
MspA1I	CMGCKG	2 cut(s)	2729, 2872
MspI	CCGG	2 cut(s)	740, 1422
MspR9I	CCNGG	3 cut(s)	740, 1452, 2570
Mva1269I	GAATGC	3 cut(s)	787, 1441, 2772
MvaI	CCWGG	2 cut(s)	1452, 2570
MwoI	GCNNNNNNNGC	6 cut(s)	562, 1880, 1889, 1893, 2714, 2723
NciI	CCSGG	1 cut(s)	740
NcoI	CCATGG	1 cut(s)	1116
NdeI	CATATG	2 cut(s)	1570, 2989
NdeII	GATC	7 cut(s)	1143, 1305, 1380, 1489, 1668, 1816, 2209
NlaIV	GGNNCC	2 cut(s)	2114, 2787
NmuCI	GTSAC	1 cut(s)	510
NsiI	ATGCAT	3 cut(s)	1570, 2634, 2989
NspI	RCATGY	1 cut(s)	2323
NspV	TTCGAA	3 cut(s)	290, 965, 2244
OliI	CACNNNNGTG	1 cut(s)	2609
PacI	TTAATTAA	1 cut(s)	1986
PaeI	GCATGC	1 cut(s)	2323
PaeR7I	CTCGAG	1 cut(s)	2645
PagI	TCATGA	1 cut(s)	2760
PceI	AGGCCT	1 cut(s)	124
PctI	GAATGC	3 cut(s)	787, 1441, 2772
PfeI	GAWTC	7 cut(s)	454, 538, 875, 2048, 2360, 2530, 2687
PflMI	CCANNNNNTGG	1 cut(s)	1936
PfoI	TCCNGGA	1 cut(s)	738
PkrI	GCNGC	5 cut(s)	1078, 1285, 1555, 1854, 2728
PleI	GAGTC	4 cut(s)	421, 435, 2566, 2656
PpsI	GAGTC	4 cut(s)	421, 435, 2566, 2656
Ppu21I	YACGTR	3 cut(s)	648, 1026, 2432
PshBI	ATTAAT	3 cut(s)	1434, 1473, 1986
PsiI	TTATAA	2 cut(s)	816, 1239
Psp124BI	GAGCTC	1 cut(s)	577
Psp1406I	AACGTT	1 cut(s)	2703
Psp6I	CCWGG	2 cut(s)	1450, 2568
PspFI	CCCAGC	3 cut(s)	474, 2550, 2729
PspGI	CCWGG	2 cut(s)	1450, 2568
PspN4I	GGNNCC	2 cut(s)	2114, 2787
PspPI	GGNCC	2 cut(s)	1804, 2165
PspXI	VCTCGAGB	1 cut(s)	2645
PstNI	CAGNNNCTG	1 cut(s)	1334
PsuI	RGATCY	2 cut(s)	1816, 2209
PvuII	CAGCTG	2 cut(s)	2729, 2872
RsaI	GTAC	4 cut(s)	208, 630, 829, 1928
RsaNI	GTAC	4 cut(s)	207, 629, 828, 1927
RseI	CAYNNNNRTG	6 cut(s)	546, 1778, 2318, 2609, 2759, 2765
SacI	GAGCTC	1 cut(s)	577
SatI	GCNGC	5 cut(s)	1077, 1284, 1554, 1853, 2727
Sau3AI	GATC	7 cut(s)	1143, 1305, 1380, 1489, 1668, 1816, 2209
Sau96I	GGNCC	2 cut(s)	1804, 2165
SchI	GAGTC	4 cut(s)	422, 436, 2567, 2657
ScrFI	CCNGG	3 cut(s)	740, 1452, 2570
SduI	GDGCHC	4 cut(s)	232, 577, 1760, 2895
SfcI	CTRYAG	1 cut(s)	1297
Sfr274I	CTCGAG	1 cut(s)	2645
SfuI	TTCGAA	3 cut(s)	290, 965, 2244
SinI	GGWCC	1 cut(s)	1804
SlaI	CTCGAG	1 cut(s)	2645
SmiMI	CAYNNNNRTG	6 cut(s)	546, 1778, 2318, 2609, 2759, 2765
SmlI	CTYRAG	2 cut(s)	410, 2645
SmoI	CTYRAG	2 cut(s)	410, 2645
SnaBI	TACGTA	2 cut(s)	648, 1026
SphI	GCATGC	1 cut(s)	2323
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	5 cut(s)	803, 1076, 1598, 1853, 2108
SspMI	CTAG	6 cut(s)	120, 255, 1614, 2555, 2589, 2813
SstI	GAGCTC	1 cut(s)	577
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	3 cut(s)	738, 1450, 2568
StyI	CCWWGG	2 cut(s)	1116, 1897
TaiI	ACGT	5 cut(s)	650, 1028, 1550, 2434, 2706
TaqI	TCGA	7 cut(s)	290, 365, 498, 653, 965, 2244, 2646
TaqII	GACCGA	1 cut(s)	1821
TatI	WGTACW	2 cut(s)	206, 628
TauI	GCSGC	2 cut(s)	1079, 1855
TfiI	GAWTC	7 cut(s)	454, 538, 875, 2048, 2360, 2530, 2687
TscAI	CASTG	6 cut(s)	14, 121, 287, 2028, 2491, 2515
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	3 cut(s)	1283, 1553, 2726
Tsp45I	GTSAC	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	2889
TspRI	CASTG	6 cut(s)	14, 121, 287, 2028, 2491, 2515
Van91I	CCANNNNNTGG	1 cut(s)	1936
VneI	GTGCAC	1 cut(s)	1756
VpaK11BI	GGWCC	1 cut(s)	1804
VspI	ATTAAT	3 cut(s)	1434, 1473, 1986
XagI	CCTNNNNNAGG	1 cut(s)	129
XapI	RAATTY	3 cut(s)	220, 2248, 2859
XbaI	TCTAGA	1 cut(s)	2588
XceI	RCATGY	1 cut(s)	2323
XhoI	CTCGAG	1 cut(s)	2645
XspI	CTAG	6 cut(s)	120, 255, 1614, 2555, 2589, 2813
Zsp2I	ATGCAT	3 cut(s)	1570, 2634, 2989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.