Rorug02G0494800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014465
Physical Location & Seq
Forward (+)
62375466 .. 62388398
12933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0494800.1

Sequence Viewer

Length: 1458 bp
ATGGATTCCAAGGAATTTGTAGCTGATAAGCCTCATGCGGTTTGTATTCCAGCTCCAGCACAAAGCCACATAAAGGCAATGCTCAAACTAGCAAAGCTCCTCCACTATAGGGGTTTCCACATAACTTTTGTCAACACAGAGTTCAACCACAAACGGTTTCTTAAATCTCTAGGACCCAACTCCCTCGACGGCTTGCCCGATTTTCGCTTTGAGACCATCCCCGATGGCATTCCTGCAGGTTCGGATGAAGATGCCACCCAAGACGTCACTTTGGTTGCTGATGCCATAATGAAAGATCTATTACTGGCTCCTTTTCGAGACCTCCTCTTGAAGCTCAACGACGAAGACGGTAGTACTCCGTTGACTTGCGTCGTTTCAGATGGTTTCATGCCGTTCGCCATCACAGCTGCTGAAGAACTTGGAGTGCCTAGAGTAGCCTTCTTCACTATTGCTGCTTGCAGCTTTATGGCATGTAAACAGTATCCCACTTTGGTGGAAAAAGGACTTGCACCACTCAAAGATGAGAGCTGTTTCACAAATGGGTTTTTGGACGAGGTTTTAGATTGGATTCCAGGAATCAAAGACATCCGTTTACGAGATTTACCAGCCAACTTTCGAACTACGGACCCAGACGACATCCTGTTTAATTTCACCATGGAATCAATGCATAGAGCTGATAAGGCTTCGGCAATAATTCTTCATACTTTTGATGCTTTGGAGCCTCATGTTCTGGAGGCTCTCTCATCTATGCTTAAGCTCCCACCTATTTATGCAATTGGGCCTCAACAATTACACCTCAATCAATTACCAGAAGACCCTTTAAAGGATGTGGGATACAGTCTATGGAAAGAAGAAACTGGGTGTCTCGAATGGCTCGATTCTAAGGAGCATAACTCAGTTGTTTATGTCAGTTTTGGCAGTATAGCGGTAATGTCTCCACAACATCTTGTAGAGTTTGGTTGGGGACTTGCAAATAGTAAAGTTCCCTTCTTCTGGGTCATTAGGCCCGATTTGGTTGTTGGTGAGTCCGCGATTTTGCCACCGGAGTTTGTAGCTGAAACCAAGGAAAGAGGTCTAATCGCAAGTTGGTGTCCGCAAGAGCAAGTACTTAACCACCCATCAGTTGGAGGGTTTTTGACACACAGCGGTTGGAATTCGACTGTTGAGAGTTTGTGTGCAGGTGTGCCTATGCTATGTTGGCCATTCTTTGCTGACCAGCTAACAAATTGTTGGTATGCTTGTAATGAATGGGGCATTGGCATGGAGATTAGTAATGATGTAAAGAGAGGCGAAGTTGAGAAGCTTGTTAGAGAGTTAATGGGGGGAGAGAAGGGTGAGAAAATGAAAAAAAAGGTCTTGGAATGGAAGAAACTTGCAGAACAAGCTACTGCTCCACATGGTTCATCATCCAAAAACTTGGACAATTTAGTGAATCAGGTGCTACTAAGGAAAAGCTAG

Protein Analysis

485

Amino Acids

53.97

Weight (kDa)

5.16

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 291 - 443 9.4e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73710
fragaria_vesca FvH4_6g44930
malus_domestica MD09G1091700.v1.1 MD17G1081600.v1.1
prunus_persica Prupe.3G233300_v2.0.a1
pyrus_communis pycom09g01730 pycom17g07990
rosa_chinensis RchiOBHm_Chr2g0162121
rosa_laevigata RLG00000021324
rosa_multiflora Rmu_sc0004020.1_g000031
rosa_roxburghii Rroxscaffold_2G00088280
rosa_rugosa Rorug02G0494800
rosa_samantha Rh2AG561300 Rh2BG574400 Rh2CG544500 Rh2DG584300
rosa_wichuraiana Rw2G046480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1169
AatII GACGTC 1 cut(s) 267
Acc36I ACCTGC 2 cut(s) 227, 1169
AccB7I CCANNNNNTGG 1 cut(s) 1124
AccII CGCG 1 cut(s) 1031
AciI CCGC 5 cut(s) 38, 926, 1029, 1094, 1146
AcoI YGGCCR 1 cut(s) 1199
AcsI RAATTY 2 cut(s) 14, 1153
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 2 cut(s) 355, 1107
AfiI CCNNNNNNNGG 5 cut(s) 73, 109, 823, 993, 1124
AflII CTTAAG 1 cut(s) 752
AgsI TTSAA 2 cut(s) 145, 331
AjnI CCWGG 1 cut(s) 571
AjuI GAANNNNNNNTTGG 2 cut(s) 1239, 1271
AleI CACNNNNGTG 1 cut(s) 491
Alw26I GTCTC 4 cut(s) 206, 312, 869, 939
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 3 cut(s) 779, 1004, 1199
ApeKI GCWGC 3 cut(s) 407, 452, 459
ApoI RAATTY 2 cut(s) 14, 1153
AspS9I GGNCC 4 cut(s) 173, 625, 779, 1005
AsuHPI GGTGA 3 cut(s) 643, 1034, 1346
AsuII TTCGAA 1 cut(s) 616
AvaII GGWCC 2 cut(s) 173, 625
BalI TGGCCA 1 cut(s) 1201
BbsI GAAGAC 2 cut(s) 351, 819
BbvI GCAGC 3 cut(s) 394, 439, 471
BccI CCATC 5 cut(s) 218, 224, 374, 407, 1126
BceAI ACGGC 2 cut(s) 205, 376
BciT130I CCWGG 1 cut(s) 573
BciVI GTATCC 2 cut(s) 492, 827
BcoDI GTCTC 4 cut(s) 206, 312, 869, 939
BfaI CTAG 4 cut(s) 89, 170, 429, 1456
BfmI CTRYAG 2 cut(s) 106, 234
BfrI CTTAAG 1 cut(s) 752
BfuAI ACCTGC 2 cut(s) 227, 1169
BfuI GTATCC 2 cut(s) 492, 827
BglII AGATCT 1 cut(s) 295
BisI GCNGC 3 cut(s) 408, 453, 460
BlsI GCNGC 3 cut(s) 409, 454, 461
BmcAI AGTACT 2 cut(s) 355, 1107
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 2 cut(s) 173, 625
BmgT120I GGNCC 4 cut(s) 173, 625, 779, 1005
BmiI GGNNCC 4 cut(s) 175, 309, 627, 720
BmrFI CCNGG 1 cut(s) 573
BmrI ACTGGG 1 cut(s) 867
BmsI GCATC 3 cut(s) 241, 271, 700
BmuI ACTGGG 1 cut(s) 867
BoxI GACNNNNGTC 1 cut(s) 368
BpiI GAAGAC 2 cut(s) 351, 819
BplI GAGNNNNNCTC 6 cut(s) 309, 341, 725, 757, 878, 910
BpmI CTGGAG 2 cut(s) 39, 752
Bpu14I TTCGAA 1 cut(s) 616
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 2 cut(s) 206, 312
BsaJI CCNNGG 3 cut(s) 9, 654, 1062
BsaWI WCCGGW 1 cut(s) 1042
Bsc4I CCNNNNNNNGG 5 cut(s) 73, 109, 823, 993, 1124
Bse1I ACTGG 2 cut(s) 309, 862
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 3 cut(s) 9, 654, 1062
BseGI GGATG 6 cut(s) 216, 250, 585, 636, 832, 1406
BseLI CCNNNNNNNGG 5 cut(s) 73, 109, 823, 993, 1124
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 909
BseNI ACTGG 2 cut(s) 309, 862
BseRI GAGGAG 2 cut(s) 89, 314
BseXI GCAGC 3 cut(s) 394, 439, 471
BsgI GTGCAG 1 cut(s) 1197
Bsh1236I CGCG 1 cut(s) 1031
BshFI GGCC 3 cut(s) 781, 1006, 1201
BsiSI CCGG 1 cut(s) 1043
BslFI GGGAC 1 cut(s) 978
BslI CCNNNNNNNGG 5 cut(s) 73, 109, 823, 993, 1124
BsmAI GTCTC 4 cut(s) 206, 312, 869, 939
BsmFI GGGAC 1 cut(s) 978
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 3 cut(s) 781, 1006, 1201
Bso31I GGTCTC 2 cut(s) 206, 312
Bsp119I TTCGAA 1 cut(s) 616
Bsp143I GATC 1 cut(s) 295
Bsp19I CCATGG 1 cut(s) 654
BspACI CCGC 5 cut(s) 38, 926, 1029, 1094, 1146
BspANI GGCC 3 cut(s) 781, 1006, 1201
BspCNI CTCAG 1 cut(s) 908
BspFNI CGCG 1 cut(s) 1031
BspLI GGNNCC 4 cut(s) 175, 309, 627, 720
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 2 cut(s) 227, 1169
BspT104I TTCGAA 1 cut(s) 616
BspTI CTTAAG 1 cut(s) 752
BspTNI GGTCTC 2 cut(s) 206, 312
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 2 cut(s) 309, 862
BssECI CCNNGG 3 cut(s) 9, 654, 1062
BssMI GATC 1 cut(s) 295
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 3 cut(s) 9, 654, 1062
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 5 cut(s) 156, 350, 480, 839, 1162
BstACI GRCGYC 1 cut(s) 264
BstAFI CTTAAG 1 cut(s) 752
BstBI TTCGAA 1 cut(s) 616
BstC8I GCNNGC 2 cut(s) 194, 457
BstDEI CTNAG 3 cut(s) 882, 895, 1445
BstDSI CCRYGG 1 cut(s) 654
BstF5I GGATG 6 cut(s) 216, 250, 585, 636, 832, 1406
BstFNI CGCG 1 cut(s) 1031
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 4 cut(s) 206, 312, 869, 939
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 4 cut(s) 404, 680, 1198, 1382
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 1 cut(s) 474
BstPAI GACNNNNGTC 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 2 cut(s) 106, 234
BstUI CGCG 1 cut(s) 1031
BstV1I GCAGC 3 cut(s) 394, 439, 471
BstV2I GAAGAC 2 cut(s) 351, 819
BstX2I RGATCY 1 cut(s) 295
BstXI CCANNNNNNTGG 2 cut(s) 493, 1417
BstYI RGATCY 1 cut(s) 295
BsuI GTATCC 2 cut(s) 492, 827
BsuRI GGCC 3 cut(s) 781, 1006, 1201
BtgI CCRYGG 1 cut(s) 654
BtsCI GGATG 6 cut(s) 216, 250, 585, 636, 832, 1406
BveI ACCTGC 2 cut(s) 227, 1169
Cac8I GCNNGC 2 cut(s) 194, 457
CaiI CAGNNNCTG 1 cut(s) 410
Cfr13I GGNCC 4 cut(s) 173, 625, 779, 1005
CseI GACGC 1 cut(s) 358
Csp6I GTAC 2 cut(s) 354, 1106
CviAII CATG 7 cut(s) 35, 388, 471, 655, 725, 1261, 1397
CviQI GTAC 2 cut(s) 354, 1106
DdeI CTNAG 3 cut(s) 882, 895, 1445
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
DraI TTTAAA 1 cut(s) 822
EaeI YGGCCR 1 cut(s) 1199
Eco130I CCWWGG 3 cut(s) 9, 654, 1062
Eco31I GGTCTC 2 cut(s) 206, 312
Eco47I GGWCC 2 cut(s) 173, 625
Eco57I CTGAAG 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 1153
EcoRII CCWGG 1 cut(s) 571
EcoT14I CCWWGG 3 cut(s) 9, 654, 1062
EcoT22I ATGCAT 1 cut(s) 669
ErhI CCWWGG 3 cut(s) 9, 654, 1062
FaeI CATG 7 cut(s) 38, 391, 474, 658, 728, 1264, 1400
FaqI GGGAC 1 cut(s) 978
FatI CATG 7 cut(s) 34, 387, 470, 654, 724, 1260, 1396
Fnu4HI GCNGC 3 cut(s) 408, 453, 460
FokI GGATG 6 cut(s) 203, 257, 572, 623, 839, 1393
Fsp4HI GCNGC 3 cut(s) 408, 453, 460
FspBI CTAG 4 cut(s) 89, 170, 429, 1456
GluI GCNGC 3 cut(s) 408, 453, 460
GsuI CTGGAG 2 cut(s) 39, 752
HaeIII GGCC 3 cut(s) 781, 1006, 1201
HapII CCGG 1 cut(s) 1043
HgaI GACGC 1 cut(s) 358
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 7 cut(s) 38, 391, 474, 658, 728, 1264, 1400
HincII GTYRAC 2 cut(s) 133, 363
HindII GTYRAC 2 cut(s) 133, 363
HindIII AAGCTT 1 cut(s) 1301
HinfI GANTC 7 cut(s) 5, 568, 576, 659, 878, 1025, 1432
HpaII CCGG 1 cut(s) 1043
HphI GGTGA 3 cut(s) 643, 1034, 1346
Hpy166II GTNNAC 4 cut(s) 133, 363, 476, 593
Hpy188I TCNGA 2 cut(s) 244, 379
Hpy188III TCNNGA 4 cut(s) 317, 328, 731, 866
Hpy8I GTNNAC 4 cut(s) 133, 363, 476, 593
Hpy99I CGWCG 3 cut(s) 191, 344, 374
HpyAV CCTTC 3 cut(s) 448, 997, 1324
HpyCH4III ACNGT 5 cut(s) 156, 350, 480, 839, 1162
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 8 cut(s) 236, 459, 509, 667, 773, 971, 1178, 1376
HpyF10VI GCNNNNNNNGC 4 cut(s) 404, 680, 1198, 1382
HpyF3I CTNAG 3 cut(s) 882, 895, 1445
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 7 cut(s) 38, 391, 474, 658, 728, 1264, 1400
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 7 cut(s) 58, 102, 313, 718, 762, 886, 1396
Lsp1109I GCAGC 3 cut(s) 394, 439, 471
LweI GCATC 3 cut(s) 241, 271, 700
MaeI CTAG 4 cut(s) 89, 170, 429, 1456
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 9 cut(s) 260, 356, 425, 433, 689, 824, 863, 982, 1378
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 1 cut(s) 295
MlsI TGGCCA 1 cut(s) 1201
MluCI AATT 9 cut(s) 14, 646, 693, 774, 788, 803, 1153, 1225, 1423
MluNI TGGCCA 1 cut(s) 1201
MlyI GAGTC 1 cut(s) 1034
MmeI TCCRAC 2 cut(s) 1105, 1130
Mox20I TGGCCA 1 cut(s) 1201
Mph1103I ATGCAT 1 cut(s) 669
MscI TGGCCA 1 cut(s) 1201
MseI TTAA 6 cut(s) 162, 645, 753, 821, 1110, 1316
MslI CAYNNNNRTG 2 cut(s) 491, 1259
Msp20I TGGCCA 1 cut(s) 1201
MspA1I CMGCKG 2 cut(s) 407, 1146
MspCI CTTAAG 1 cut(s) 752
MspI CCGG 1 cut(s) 1043
MspR9I CCNGG 1 cut(s) 573
MunI CAATTG 1 cut(s) 774
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 1 cut(s) 1031
MwoI GCNNNNNNNGC 4 cut(s) 404, 680, 1198, 1382
NcoI CCATGG 1 cut(s) 654
NdeII GATC 1 cut(s) 295
NlaIII CATG 7 cut(s) 38, 391, 474, 658, 728, 1264, 1400
NlaIV GGNNCC 4 cut(s) 175, 309, 627, 720
NmuCI GTSAC 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 669
NspI RCATGY 1 cut(s) 474
NspV TTCGAA 1 cut(s) 616
OliI CACNNNNGTG 1 cut(s) 491
PaqCI CACCTGC 1 cut(s) 1169
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 873
PctI GAATGC 1 cut(s) 228
PfeI GAWTC 6 cut(s) 5, 568, 576, 659, 878, 1432
PflMI CCANNNNNTGG 1 cut(s) 1124
PfoI TCCNGGA 1 cut(s) 571
PkrI GCNGC 3 cut(s) 409, 454, 461
PleI GAGTC 1 cut(s) 1033
PpsI GAGTC 1 cut(s) 1033
PpuMI RGGWCCY 1 cut(s) 173
PshAI GACNNNNGTC 1 cut(s) 368
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 4 cut(s) 175, 309, 627, 720
PspPI GGNCC 4 cut(s) 173, 625, 779, 1005
PspPPI RGGWCCY 1 cut(s) 173
PstI CTGCAG 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 2 cut(s) 355, 1107
RsaNI GTAC 2 cut(s) 354, 1106
RseI CAYNNNNRTG 2 cut(s) 491, 1259
SaqAI TTAA 6 cut(s) 162, 645, 753, 821, 1110, 1316
SatI GCNGC 3 cut(s) 408, 453, 460
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 4 cut(s) 173, 625, 779, 1005
SbfI CCTGCAGG 1 cut(s) 238
ScaI AGTACT 2 cut(s) 355, 1107
SchI GAGTC 1 cut(s) 1034
ScrFI CCNGG 1 cut(s) 573
SdaI CCTGCAGG 1 cut(s) 238
SfaNI GCATC 3 cut(s) 241, 271, 700
SfcI CTRYAG 2 cut(s) 106, 234
SfuI TTCGAA 1 cut(s) 616
SinI GGWCC 2 cut(s) 173, 625
SmiMI CAYNNNNRTG 2 cut(s) 491, 1259
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse8387I CCTGCAGG 1 cut(s) 238
Sse9I AATT 9 cut(s) 14, 646, 693, 774, 788, 803, 1153, 1225, 1423
SsiI CCGC 5 cut(s) 38, 926, 1029, 1094, 1146
SspMI CTAG 4 cut(s) 89, 170, 429, 1456
StyD4I CCNGG 1 cut(s) 571
StyI CCWWGG 3 cut(s) 9, 654, 1062
TaaI ACNGT 5 cut(s) 156, 350, 480, 839, 1162
TaiI ACGT 1 cut(s) 267
TaqI TCGA 6 cut(s) 186, 316, 616, 867, 876, 1157
TasI AATT 9 cut(s) 14, 646, 693, 774, 788, 803, 1153, 1225, 1423
TatI WGTACW 2 cut(s) 353, 1105
TfiI GAWTC 6 cut(s) 5, 568, 576, 659, 878, 1432
Tru1I TTAA 6 cut(s) 162, 645, 753, 821, 1110, 1316
Tru9I TTAA 6 cut(s) 162, 645, 753, 821, 1110, 1316
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 3 cut(s) 407, 452, 459
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 7 cut(s) 261, 305, 376, 689, 1260, 1358, 1392
TspGWI ACGGA 3 cut(s) 348, 578, 638
Van91I CCANNNNNTGG 1 cut(s) 1124
Vha464I CTTAAG 1 cut(s) 752
VpaK11BI GGWCC 2 cut(s) 173, 625
XapI RAATTY 2 cut(s) 14, 1153
XceI RCATGY 1 cut(s) 474
XcmI CCANNNNNNNNNTGG 1 cut(s) 1121
XspI CTAG 4 cut(s) 89, 170, 429, 1456
ZraI GACGTC 1 cut(s) 265
ZrmI AGTACT 2 cut(s) 355, 1107
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.