Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014465

Physical Location & Seq

Genomic Coordinates Reverse (-)

73721704 .. 73724765

Gene Structure 3062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G046480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3027 bp

ATGCTTCACTGCCAGAGCTACAATTCCAGAGAATTAGGGCAAGAAAGTCTCCACAGCTCAATGCAAGGCCACACCTTTTCACCAAGTAAGCTTCAAAACCCCCAATCTAATTTCACTACTAGGCCTCTTCTAGGGTTTCGTTTCACTCCCCACAACCATAGCTTAGCTAAAACCCAACTATGCCCTGTTCCAATTTCTCAAAAGGGTAGCTGTTTTGTGGGTTCACGACCTCAGAAGCAGAGTTCAAGAGGGTCTAGGGTTTATGTAGGGTTTAAGCTTCAGTGTCATTCGAAGGCATTGGTTTTACCCACGAAGGTTTCTTTAGTTAATGGTAAGAAGAAGAGGTATGGAGGCGTGTTGCCTTCGATTTTGAGGTCTTTGGAGTCTGAAAACGATGTTGAAAAGGCACTCAAGTCGTTTGGGGAGAGTCTGAGTGCGAAAGAACAGACTGTGATTCTCAAAGAACAGAGGAGCTGGGAGAGAGTTCTTCGTGTTTTCGAGTGGTTCAAGTCACAGAAAGAGTATGTGCCCAATGTGATTCACTACAATGTGGTGCTTCGGGTGCTTGGTAGAGCTCAGAGATGGGATGAGCTGAGGCTTTGTTGGGTTGAAATGGCGAAAAAGGGTGTCCTGCCGACTAACAATACGTATTCCATGCTTGTTGATGTGTATGGGAAAGCGGGTCTTGTGAAGGAGGCCCTGTTGTGGATTAAGCACATGAAGCTAAGGGGACTTTTCCCGGATGAGGTTACAATGAATACAGTTGTTCGGGCATTGAAGAATGCAGAAGAGTTTGATACGGCGGATAAGTTTTATAAGGACTGGTGTACTGGGCGGATTGAGCTCGATGACCTTGAGTTGGATTCTATGGCTGATTCTGTGATTGGTTCTGTTTCAGAACCTATTAGTTTCAAGCATTTCTTGTCCACTGAGCTATTCAGGACTGGTGGGAGAGTTCCCACTTCAAAAATTATGACCTCAATGGATACAGAGAACTCTATTCAGAAACCACGACTTACATCTACCTATAATAGTTTGATTGATTTGTATGGAAAGGCAGGGCGTCTGAATGATGCGGCTAATGTGTTTGGAGATATGATGAAGTCTGGAGTGGCAATGGATGTTATTACTTTTAATACTATGATCTTTACTTGTGGAAGTCATGGGCATTTGTTGGAGGCGGAAGCTTTGCTTAGTAAGATGGAAGAAAGGGGTATATCTCCTGATACAAGAACTTATAACATTTTTCTATCTCTGTATGCTGATGAAGATCAGAGGGTAGGTCTTTACCAGGATATTGTATCTCACCGGACCATTCTTCATGTATTATGTGAGAGAAATATGGTCAGAGATGTGGAGATTGTGATTGAGGATATGGAGAAATCTGGTGTCTCTATTAATGAGCATTCTCTTCCTGGTATCATCAAGATGTATATTAATGAAGGACGGATTGATCAGGCAAACTTACTTTATGAGAAATGTCAGTTAAACCGTGGGATTTCATCAAAGACGCGTGCAGCAATTATAGATGCATATGCTGAAAAGGGACTTTGGACTGAAGCCGAGGTCGTATTCTATAGGAAGGGAGATTTGGTTGGACAGACGAAGGATATTGTGGAATACAATGTTATGATCAAAGCGTATGGTAAGGCAAGGCTTTATGACAAAGCTTTCTCTCTCTTCAGGGGCATGAAAAAGCATGGGACTTGGCCCGATGAGTGCACTTACAACTCTCTCATCCAAATGTTCTCCGGAGGTGATTTAGTGGACCAAGCAAGGGATCTTCTAACAGAAATGCAGGAAACTGGTCTGAAGCCTCAATCTCTAACCTTTTCTGCTCTTATTGCCTGCTATGCTCGCCTTGGCCAGCTTTCGGATGCAGTTGATGTGTACCAAGACTTTGTAAAGTCAGGAACAAAGCCAAATGAGTTTGTGTACGGTTCTTTAATCAATGGATTCGCAGAAACTGGCAGAGTTGAAGAAGCACTGAAGTATTTTCACCACATGGAAGAATTGGGGATAACTGCAAATCAAATAGTTCTGACATCTCTGATAAAGGCGTATAGTAAGGTGGGAAGCCGTGATGGAGCAGAAGTGTTGTATGAGAGGTTGAAAGGTTTTGATGGTGGCCCCGATGTTGTTGCATCTAACAGTATGATAAATCTGTATGCAGATCTTGGGTTGGTATCTGAAGCCAAATTGATTTTTGAAAATTTGAGAGCGAAAGGTTGGGCTGATGAGATAGCGTTTGCAACCATGATGTATCTGTACAAGAGCATGGGCATGCTTGATGAGGCCATTGATGTAGCAGAGGAAATGAAAGAATCGGGTTTAATAAGGGACTGCGCTTCATTTAACAAGGTGATGTCATGCTATGCCATTAACGGGCAGCTACGTGAATGCGGTGAATTATTGCACGAGATGGTAACTCGGAAACTGTTGCTTGACAGTGGAACTTGTAATGTATTGTTCACTGTATTGAGAAAAGGAGGGATTCCCATTGAAGCTGTAACCCAGCTAGAGTCATCTTACCAGGAAGGGAAACCTTACTCTAGACAAGCTATCATCACCTCTGTGTTCTCTCTGGTTGGTATGCATGGTTTGGCACTCGAATCCTGTGAAACATTCACAAAAGCTGACATAAATCTTGATTCTTTTCTCTACAATGTTGCGATATATGCTTATGGGGCAGCTGGGGAGATTGACAAGGCTCTGAACATTTTCATGAGAATGCAGGATGAAGGTGTGGAACCAGACCTTGTAACGCATATTTTCCTAGTAGGTTGTTATGGAAAAGCAGGTATGGTTGAAGGAGTGAAGAGAATTTACAGCCAGCTGAAATATGAAGAGATAGAGCCTAATCCGTCCTTGTTCAGAGCTGTTATAGATGCCTATACAGATGCCAATAGGCATGACCTTGCCAAATTGGTTAAGCAAGACAGGAAATATGCATTTGACTCGGAACATCTAGTAGATTCCGAAACCAAAGATGAGTTTGATGACACTACCTCAGAGTTTGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1008

Amino Acids

113.44

Weight (kDa)

5.82

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	177 - 224	1.1e-07	PPR repeat family
PPR_2	PF13041	341 - 385	1e-11	PPR repeat family
PPR	PF01535	341 - 371	4.6e-07	PPR repeat
PPR_1	PF12854	341 - 366	9.4e-06	PPR repeat
PPR_3	PF13812	365 - 422	1.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	370 - 402	8.2e-06	PPR repeat
PPR_2	PF13041	374 - 420	7.6e-12	PPR repeat family
PPR_2	PF13041	536 - 583	7.3e-13	PPR repeat family
PPR_3	PF13812	537 - 584	2.4e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	539 - 634	1.2e-09	Fungal tetratrico peptide repeats
PPR	PF01535	541 - 568	3.9e-07	PPR repeat
PPR_long	PF17177	554 - 667	3.4e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	571 - 620	4.9e-09	PPR repeat family
PPR_2	PF13041	606 - 654	3.7e-09	PPR repeat family
PPR_1	PF12854	638 - 670	3.4e-06	PPR repeat
PPR_2	PF13041	644 - 690	4.1e-07	PPR repeat family
PPR	PF01535	645 - 674	1.5e-06	PPR repeat
PPR_3	PF13812	878 - 932	6.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	884 - 927	2.6e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73710
fragaria_vesca	FvH4_6g44930
malus_domestica	MD09G1091700.v1.1 MD17G1081600.v1.1
prunus_persica	Prupe.3G233300_v2.0.a1
pyrus_communis	pycom09g01730 pycom17g07990
rosa_chinensis	RchiOBHm_Chr2g0162121
rosa_laevigata	RLG00000021324
rosa_multiflora	Rmu_sc0004020.1_g000031
rosa_roxburghii	Rroxscaffold_2G00088280
rosa_rugosa	Rorug02G0494800
rosa_samantha	Rh2AG561300 Rh2BG574400 Rh2CG544500 Rh2DG584300
rosa_wichuraiana	Rw2G046480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	816, 1239
Acc36I	ACCTGC	1 cut(s)	2789
AccII	CGCG	1 cut(s)	1513
AccIII	TCCGGA	1 cut(s)	1751
AciI	CCGC	6 cut(s)	680, 803, 835, 1076, 1181, 2403
AclWI	GGATC	1 cut(s)	1788
AcoI	YGGCCR	1 cut(s)	1864
AcsI	RAATTY	2 cut(s)	2212, 2823
AcuI	CTGAAG	6 cut(s)	263, 1578, 1666, 1832, 2009, 2211
AcyI	GRCGYC	1 cut(s)	1063
AfaI	GTAC	4 cut(s)	829, 1892, 1937, 2270
AfiI	CCNNNNNNNGG	7 cut(s)	131, 705, 745, 859, 1777, 1873, 2385
AflIII	ACRYGT	1 cut(s)	1511
AjnI	CCWGG	3 cut(s)	1290, 1414, 2532
AjuI	GAANNNNNNNTTGG	2 cut(s)	1574, 1606
AleI	CACNNNNGTG	1 cut(s)	2573
Alw21I	GWGCWC	3 cut(s)	577, 846, 1724
Alw26I	GTCTC	2 cut(s)	53, 1396
Alw44I	GTGCAC	1 cut(s)	1720
AlwI	GGATC	1 cut(s)	1788
AlwNI	CAGNNNCTG	1 cut(s)	1967
Aor13HI	TCCGGA	1 cut(s)	1751
AoxI	GGCC	7 cut(s)	67, 122, 696, 1709, 1864, 2128, 2295
ApaLI	GTGCAC	1 cut(s)	1720
ApeKI	GCWGC	3 cut(s)	1517, 2389, 2690
ApoI	RAATTY	2 cut(s)	2212, 2823
AseI	ATTAAT	2 cut(s)	1398, 1437
Asp700I	GAANNNNTTC	1 cut(s)	2720
AspLEI	GCGC	1 cut(s)	2348
AspS9I	GGNCC	5 cut(s)	697, 1311, 1710, 1768, 2129
AsuC2I	CCSGG	1 cut(s)	740
AsuHPI	GGTGA	7 cut(s)	72, 1298, 1769, 1991, 2374, 2417, 2560
AsuII	TTCGAA	1 cut(s)	290
AvaII	GGWCC	2 cut(s)	1311, 1768
BaeGI	GKGCMC	2 cut(s)	531, 1724
BalI	TGGCCA	1 cut(s)	1866
BanII	GRGCYC	2 cut(s)	577, 846
BarI	GAAGNNNNNNTAC	2 cut(s)	2810, 2842
BauI	CACGAG	1 cut(s)	2417
Bbv12I	GWGCWC	3 cut(s)	577, 846, 1724
BbvCI	CCTCAGC	1 cut(s)	593
BbvI	GCAGC	3 cut(s)	1529, 2401, 2702
BccI	CCATC	5 cut(s)	576, 1195, 2078, 2117, 2416
BceAI	ACGGC	2 cut(s)	816, 2064
BcgI	CGANNNNNNTGC	6 cut(s)	396, 430, 2123, 2157, 2940, 2974
BciT130I	CCWGG	3 cut(s)	1292, 1416, 2534
BciVI	GTATCC	1 cut(s)	979
BclI	TGATCA	2 cut(s)	1453, 1632
BcnI	CCSGG	1 cut(s)	740
BcoDI	GTCTC	2 cut(s)	53, 1396
BfaI	CTAG	7 cut(s)	120, 131, 255, 2519, 2553, 2777, 2969
BfmI	CTRYAG	1 cut(s)	1576
BfuAI	ACCTGC	1 cut(s)	2789
BfuI	GTATCC	1 cut(s)	979
BglII	AGATCT	1 cut(s)	2173
BisI	GCNGC	4 cut(s)	1077, 1518, 2390, 2691
BlpI	GCTNAGC	1 cut(s)	163
BlsI	GCNGC	4 cut(s)	1078, 1519, 2391, 2692
Bme1390I	CCNGG	4 cut(s)	740, 1292, 1416, 2534
Bme18I	GGWCC	2 cut(s)	1311, 1768
BmgT120I	GGNCC	5 cut(s)	697, 1311, 1710, 1768, 2129
BmiI	GGNNCC	2 cut(s)	2131, 2751
BmrFI	CCNGG	4 cut(s)	740, 1292, 1416, 2534
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	6 cut(s)	1063, 1519, 1867, 2153, 2878, 2890
BmuI	ACTGGG	1 cut(s)	840
BpmI	CTGGAG	1 cut(s)	1128
Bpu10I	CCTNAGC	2 cut(s)	593, 725
Bpu1102I	GCTNAGC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	2 cut(s)	395, 875
BpuMI	CCSGG	1 cut(s)	740
BsaAI	YACGTR	2 cut(s)	648, 2396
BsaBI	GATNNNNATC	1 cut(s)	1269
BsaHI	GRCGYC	1 cut(s)	1063
BsaJI	CCNNGG	3 cut(s)	1492, 1563, 1861
BsaWI	WCCGGW	2 cut(s)	1308, 1751
BsaXI	ACNNNNNCTCC	6 cut(s)	686, 716, 1578, 1608, 2079, 2109
Bsc4I	CCNNNNNNNGG	7 cut(s)	131, 705, 745, 859, 1777, 1873, 2385
Bse1I	ACTGG	5 cut(s)	827, 835, 949, 1810, 1972
Bse3DI	GCAATG	1 cut(s)	1122
Bse8I	GATNNNNATC	1 cut(s)	1269
BseAI	TCCGGA	1 cut(s)	1751
BseBI	CCWGG	3 cut(s)	1292, 1416, 2534
BseDI	CCNNGG	3 cut(s)	1492, 1563, 1861
BseGI	GGATG	6 cut(s)	592, 748, 1126, 1737, 1882, 2743
BseJI	GATNNNNATC	1 cut(s)	1269
BseLI	CCNNNNNNNGG	7 cut(s)	131, 705, 745, 859, 1777, 1873, 2385
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	6 cut(s)	245, 422, 584, 590, 921, 3024
BseNI	ACTGG	5 cut(s)	827, 835, 949, 1810, 1972
BseRI	GAGGAG	1 cut(s)	484
BseSI	GKGCMC	2 cut(s)	531, 1724
BseXI	GCAGC	3 cut(s)	1529, 2401, 2702
BseYI	CCCAGC	3 cut(s)	474, 2514, 2693
BsgI	GTGCAG	1 cut(s)	1536
Bsh1236I	CGCG	1 cut(s)	1513
BshFI	GGCC	7 cut(s)	69, 124, 698, 1711, 1866, 2130, 2297
BsiHKAI	GWGCWC	3 cut(s)	577, 846, 1724
BsiSI	CCGG	3 cut(s)	740, 1309, 1752
BslFI	GGGAC	4 cut(s)	744, 1560, 1717, 2354
BslI	CCNNNNNNNGG	7 cut(s)	131, 705, 745, 859, 1777, 1873, 2385
BsmAI	GTCTC	2 cut(s)	53, 1396
BsmFI	GGGAC	4 cut(s)	744, 1560, 1717, 2354
BsmI	GAATGC	4 cut(s)	787, 1405, 2405, 2736
BsnI	GGCC	7 cut(s)	69, 124, 698, 1711, 1866, 2130, 2297
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	4 cut(s)	531, 577, 846, 1724
Bsp13I	TCCGGA	1 cut(s)	1751
Bsp1407I	TGTACA	1 cut(s)	2268
Bsp143I	GATC	6 cut(s)	1143, 1270, 1453, 1632, 1780, 2173
Bsp1720I	GCTNAGC	1 cut(s)	163
BspACI	CCGC	6 cut(s)	680, 803, 835, 1076, 1181, 2403
BspANI	GGCC	7 cut(s)	69, 124, 698, 1711, 1866, 2130, 2297
BspCNI	CTCAG	6 cut(s)	244, 423, 585, 589, 922, 3023
BspEI	TCCGGA	1 cut(s)	1751
BspFNI	CGCG	1 cut(s)	1513
BspHI	TCATGA	1 cut(s)	2724
BspLI	GGNNCC	2 cut(s)	2131, 2751
BspMI	ACCTGC	1 cut(s)	2789
BspPI	GGATC	1 cut(s)	1788
BspT104I	TTCGAA	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	1122
BsrGI	TGTACA	1 cut(s)	2268
BsrI	ACTGG	5 cut(s)	827, 835, 949, 1810, 1972
BssECI	CCNNGG	3 cut(s)	1492, 1563, 1861
BssMI	GATC	6 cut(s)	1143, 1270, 1453, 1632, 1780, 2173
BssNI	GRCGYC	1 cut(s)	1063
BssSI	CACGAG	1 cut(s)	2417
BssT1I	CCWWGG	1 cut(s)	1861
Bst2BI	CACGAG	1 cut(s)	2417
Bst2UI	CCWGG	3 cut(s)	1292, 1416, 2534
Bst4CI	ACNGT	8 cut(s)	451, 763, 1493, 1940, 2153, 2439, 2450, 2476
Bst6I	CTCTTC	7 cut(s)	132, 335, 783, 1416, 1685, 2813, 2841
BstACI	GRCGYC	1 cut(s)	1063
BstAUI	TGTACA	1 cut(s)	2268
BstBAI	YACGTR	2 cut(s)	648, 2396
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	6 cut(s)	1515, 1849, 1858, 1868, 2285, 2834
BstDEI	CTNAG	9 cut(s)	163, 231, 431, 576, 593, 725, 930, 1193, 3010
BstDSI	CCRYGG	1 cut(s)	1492
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	6 cut(s)	592, 748, 1126, 1737, 1882, 2743
BstFNI	CGCG	1 cut(s)	1513
BstHHI	GCGC	1 cut(s)	2348
BstKTI	GATC	6 cut(s)	1146, 1273, 1456, 1635, 1783, 2176
BstMAI	GTCTC	2 cut(s)	53, 1396
BstMBI	GATC	6 cut(s)	1143, 1270, 1453, 1632, 1780, 2173
BstMWI	GCNNNNNNNGC	8 cut(s)	562, 721, 841, 1844, 1853, 1857, 2678, 2687
BstNI	CCWGG	3 cut(s)	1292, 1416, 2534
BstNSI	RCATGY	1 cut(s)	2287
BstSCI	CCNGG	4 cut(s)	738, 1290, 1414, 2532
BstSFI	CTRYAG	1 cut(s)	1576
BstSLI	GKGCMC	2 cut(s)	531, 1724
BstSNI	TACGTA	1 cut(s)	648
BstUI	CGCG	1 cut(s)	1513
BstV1I	GCAGC	3 cut(s)	1529, 2401, 2702
BstX2I	RGATCY	2 cut(s)	1780, 2173
BstYI	RGATCY	2 cut(s)	1780, 2173
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	7 cut(s)	69, 124, 698, 1711, 1866, 2130, 2297
BtgI	CCRYGG	1 cut(s)	1492
BtsCI	GGATG	6 cut(s)	592, 748, 1126, 1737, 1882, 2743
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	6 cut(s)	7, 287, 927, 1985, 2455, 2472
BveI	ACCTGC	1 cut(s)	2789
Cac8I	GCNNGC	6 cut(s)	1515, 1849, 1858, 1868, 2285, 2834
CaiI	CAGNNNCTG	1 cut(s)	1967
CciI	TCATGA	1 cut(s)	2724
CfoI	GCGC	1 cut(s)	2348
Cfr13I	GGNCC	5 cut(s)	697, 1311, 1710, 1768, 2129
CseI	GACGC	2 cut(s)	1052, 1519
Csp6I	GTAC	4 cut(s)	828, 1891, 1936, 2269
CviQI	GTAC	4 cut(s)	828, 1891, 1936, 2269
DdeI	CTNAG	9 cut(s)	163, 231, 431, 576, 593, 725, 930, 1193, 3010
DpnI	GATC	6 cut(s)	1145, 1272, 1455, 1634, 1782, 2175
DpnII	GATC	6 cut(s)	1143, 1270, 1453, 1632, 1780, 2173
EaeI	YGGCCR	1 cut(s)	1864
Eam1104I	CTCTTC	7 cut(s)	132, 335, 783, 1416, 1685, 2813, 2841
EarI	CTCTTC	7 cut(s)	132, 335, 783, 1416, 1685, 2813, 2841
EciI	GGCGGA	3 cut(s)	818, 850, 1196
Ecl136II	GAGCTC	2 cut(s)	575, 844
Eco105I	TACGTA	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	1861
Eco147I	AGGCCT	1 cut(s)	124
Eco24I	GRGCYC	2 cut(s)	577, 846
Eco47I	GGWCC	2 cut(s)	1311, 1768
Eco53kI	GAGCTC	2 cut(s)	575, 844
Eco57I	CTGAAG	6 cut(s)	263, 1578, 1666, 1832, 2009, 2211
EcoICRI	GAGCTC	2 cut(s)	575, 844
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRII	CCWGG	3 cut(s)	1290, 1414, 2532
EcoT14I	CCWWGG	1 cut(s)	1861
EcoT22I	ATGCAT	3 cut(s)	1534, 2598, 2953
EcoT38I	GRGCYC	2 cut(s)	577, 846
ErhI	CCWWGG	1 cut(s)	1861
FalI	AAGNNNNNCTT	6 cut(s)	669, 701, 905, 937, 1176, 1208
FaqI	GGGAC	4 cut(s)	744, 1560, 1717, 2354
FauI	CCCGC	1 cut(s)	673
FauNDI	CATATG	1 cut(s)	1534
FbaI	TGATCA	2 cut(s)	1453, 1632
Fnu4HI	GCNGC	4 cut(s)	1077, 1518, 2390, 2691
FokI	GGATG	6 cut(s)	599, 755, 1133, 1724, 1889, 2750
FriOI	GRGCYC	2 cut(s)	577, 846
Fsp4HI	GCNGC	4 cut(s)	1077, 1518, 2390, 2691
FspBI	CTAG	7 cut(s)	120, 131, 255, 2519, 2553, 2777, 2969
GlaI	GCGC	1 cut(s)	2347
GluI	GCNGC	4 cut(s)	1077, 1518, 2390, 2691
GsaI	CCCAGC	3 cut(s)	478, 2518, 2697
GsuI	CTGGAG	1 cut(s)	1128
HaeIII	GGCC	7 cut(s)	69, 124, 698, 1711, 1866, 2130, 2297
HapII	CCGG	3 cut(s)	740, 1309, 1752
HgaI	GACGC	2 cut(s)	1052, 1519
HhaI	GCGC	1 cut(s)	2348
Hin1I	GRCGYC	1 cut(s)	1063
Hin6I	GCGC	1 cut(s)	2346
HinP1I	GCGC	1 cut(s)	2346
HindIII	AAGCTT	4 cut(s)	89, 275, 1185, 1668
HpaII	CCGG	3 cut(s)	740, 1309, 1752
HphI	GGTGA	7 cut(s)	72, 1298, 1769, 1991, 2374, 2417, 2560
Hpy166II	GTNNAC	8 cut(s)	224, 828, 927, 1722, 1768, 1891, 1936, 2472
Hpy8I	GTNNAC	8 cut(s)	224, 828, 927, 1722, 1768, 1891, 1936, 2472
HpyCH4III	ACNGT	8 cut(s)	451, 763, 1493, 1940, 2153, 2439, 2450, 2476
HpyCH4IV	ACGT	2 cut(s)	647, 2395
HpyF10VI	GCNNNNNNNGC	8 cut(s)	562, 721, 841, 1844, 1853, 1857, 2678, 2687
HpyF3I	CTNAG	9 cut(s)	163, 231, 431, 576, 593, 725, 930, 1193, 3010
HpySE526I	ACGT	2 cut(s)	647, 2395
Hsp92I	GRCGYC	1 cut(s)	1063
HspAI	GCGC	1 cut(s)	2346
Kpn2I	TCCGGA	1 cut(s)	1751
Ksp22I	TGATCA	2 cut(s)	1453, 1632
Kzo9I	GATC	6 cut(s)	1143, 1270, 1453, 1632, 1780, 2173
LmnI	GCTCC	2 cut(s)	471, 2087
Lsp1109I	GCAGC	3 cut(s)	1529, 2401, 2702
LweI	GCATC	6 cut(s)	1063, 1519, 1867, 2153, 2878, 2890
MaeI	CTAG	7 cut(s)	120, 131, 255, 2519, 2553, 2777, 2969
MaeII	ACGT	2 cut(s)	647, 2395
MaeIII	GTNAC	5 cut(s)	510, 748, 2425, 2509, 2761
MalI	GATC	6 cut(s)	1145, 1272, 1455, 1634, 1782, 2175
MboI	GATC	6 cut(s)	1143, 1270, 1453, 1632, 1780, 2173
MflI	RGATCY	2 cut(s)	1780, 2173
MhlI	GDGCHC	4 cut(s)	531, 577, 846, 1724
MlsI	TGGCCA	1 cut(s)	1866
MluI	ACGCGT	1 cut(s)	1511
MluNI	TGGCCA	1 cut(s)	1866
MlyI	GAGTC	4 cut(s)	392, 436, 2531, 2951
MmeI	TCCRAC	3 cut(s)	840, 1155, 1576
Mox20I	TGGCCA	1 cut(s)	1866
Mph1103I	ATGCAT	3 cut(s)	1534, 2598, 2953
MroI	TCCGGA	1 cut(s)	1751
MroXI	GAANNNNTTC	1 cut(s)	2720
MscI	TGGCCA	1 cut(s)	1866
MslI	CAYNNNNRTG	7 cut(s)	546, 1427, 1742, 2282, 2573, 2723, 2729
Msp20I	TGGCCA	1 cut(s)	1866
MspA1I	CMGCKG	2 cut(s)	2693, 2836
MspI	CCGG	3 cut(s)	740, 1309, 1752
MspR9I	CCNGG	4 cut(s)	740, 1292, 1416, 2534
Mva1269I	GAATGC	4 cut(s)	787, 1405, 2405, 2736
MvaI	CCWGG	3 cut(s)	1292, 1416, 2534
MvnI	CGCG	1 cut(s)	1513
MwoI	GCNNNNNNNGC	8 cut(s)	562, 721, 841, 1844, 1853, 1857, 2678, 2687
NciI	CCSGG	1 cut(s)	740
NdeI	CATATG	1 cut(s)	1534
NdeII	GATC	6 cut(s)	1143, 1270, 1453, 1632, 1780, 2173
NlaIV	GGNNCC	2 cut(s)	2131, 2751
NmeAIII	GCCGAG	1 cut(s)	1588
NmuCI	GTSAC	1 cut(s)	510
NsiI	ATGCAT	3 cut(s)	1534, 2598, 2953
NspI	RCATGY	1 cut(s)	2287
NspV	TTCGAA	1 cut(s)	290
OliI	CACNNNNGTG	1 cut(s)	2573
PaeI	GCATGC	1 cut(s)	2287
PagI	TCATGA	1 cut(s)	2724
PceI	AGGCCT	1 cut(s)	124
PctI	GAATGC	4 cut(s)	787, 1405, 2405, 2736
PdmI	GAANNNNTTC	1 cut(s)	2720
PfoI	TCCNGGA	1 cut(s)	738
PkrI	GCNGC	4 cut(s)	1078, 1519, 2391, 2692
PleI	GAGTC	4 cut(s)	391, 435, 2530, 2951
PpsI	GAGTC	4 cut(s)	391, 435, 2530, 2951
Ppu21I	YACGTR	2 cut(s)	648, 2396
PshBI	ATTAAT	2 cut(s)	1398, 1437
PsiI	TTATAA	2 cut(s)	816, 1239
Psp124BI	GAGCTC	2 cut(s)	577, 846
Psp6I	CCWGG	3 cut(s)	1290, 1414, 2532
PspFI	CCCAGC	3 cut(s)	474, 2514, 2693
PspGI	CCWGG	3 cut(s)	1290, 1414, 2532
PspN4I	GGNNCC	2 cut(s)	2131, 2751
PspPI	GGNCC	5 cut(s)	697, 1311, 1710, 1768, 2129
PstNI	CAGNNNCTG	1 cut(s)	1967
PsuI	RGATCY	2 cut(s)	1780, 2173
PvuII	CAGCTG	2 cut(s)	2693, 2836
RsaI	GTAC	4 cut(s)	829, 1892, 1937, 2270
RsaNI	GTAC	4 cut(s)	828, 1891, 1936, 2269
RseI	CAYNNNNRTG	7 cut(s)	546, 1427, 1742, 2282, 2573, 2723, 2729
SacI	GAGCTC	2 cut(s)	577, 846
SatI	GCNGC	4 cut(s)	1077, 1518, 2390, 2691
Sau3AI	GATC	6 cut(s)	1143, 1270, 1453, 1632, 1780, 2173
Sau96I	GGNCC	5 cut(s)	697, 1311, 1710, 1768, 2129
SchI	GAGTC	4 cut(s)	392, 436, 2531, 2951
ScrFI	CCNGG	4 cut(s)	740, 1292, 1416, 2534
SduI	GDGCHC	4 cut(s)	531, 577, 846, 1724
SfaNI	GCATC	6 cut(s)	1063, 1519, 1867, 2153, 2878, 2890
SfcI	CTRYAG	1 cut(s)	1576
SfuI	TTCGAA	1 cut(s)	290
SinI	GGWCC	2 cut(s)	1311, 1768
SmiMI	CAYNNNNRTG	7 cut(s)	546, 1427, 1742, 2282, 2573, 2723, 2729
SmlI	CTYRAG	2 cut(s)	410, 854
SmoI	CTYRAG	2 cut(s)	410, 854
SnaBI	TACGTA	1 cut(s)	648
SphI	GCATGC	1 cut(s)	2287
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	6 cut(s)	680, 803, 835, 1076, 1181, 2403
SspMI	CTAG	7 cut(s)	120, 131, 255, 2519, 2553, 2777, 2969
SstI	GAGCTC	2 cut(s)	577, 846
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	4 cut(s)	738, 1290, 1414, 2532
StyI	CCWWGG	1 cut(s)	1861
TaaI	ACNGT	8 cut(s)	451, 763, 1493, 1940, 2153, 2439, 2450, 2476
TaiI	ACGT	2 cut(s)	650, 2398
TaqI	TCGA	5 cut(s)	290, 365, 498, 846, 2610
TatI	WGTACW	2 cut(s)	827, 2268
TauI	GCSGC	1 cut(s)	1079
TscAI	CASTG	6 cut(s)	14, 287, 934, 1992, 2455, 2479
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	3 cut(s)	1517, 2389, 2690
Tsp45I	GTSAC	1 cut(s)	510
TspGWI	ACGGA	2 cut(s)	1462, 2853
TspRI	CASTG	6 cut(s)	14, 287, 934, 1992, 2455, 2479
VneI	GTGCAC	1 cut(s)	1720
VpaK11BI	GGWCC	2 cut(s)	1311, 1768
VspI	ATTAAT	2 cut(s)	1398, 1437
XagI	CCTNNNNNAGG	1 cut(s)	129
XapI	RAATTY	2 cut(s)	2212, 2823
XbaI	TCTAGA	1 cut(s)	2552
XceI	RCATGY	1 cut(s)	2287
XmnI	GAANNNNTTC	1 cut(s)	2720
XspI	CTAG	7 cut(s)	120, 131, 255, 2519, 2553, 2777, 2969
Zsp2I	ATGCAT	3 cut(s)	1534, 2598, 2953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.