Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73710 |
| fragaria_vesca | FvH4_6g44930 |
| malus_domestica | MD09G1091700.v1.1 MD17G1081600.v1.1 |
| prunus_persica | Prupe.3G233300_v2.0.a1 |
| pyrus_communis | pycom09g01730 pycom17g07990 |
| rosa_chinensis | RchiOBHm_Chr2g0162121 |
| rosa_laevigata | RLG00000021324 |
| rosa_multiflora | Rmu_sc0004020.1_g000031 |
| rosa_roxburghii | Rroxscaffold_2G00088280 |
| rosa_rugosa | Rorug02G0494800 |
| rosa_samantha | Rh2AG561300 Rh2BG574400 Rh2CG544500 Rh2DG584300 |
| rosa_wichuraiana | Rw2G046480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 831, 1254 |
| AatII | GACGTC | 1 cut(s) | 1081 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1951 |
| AciI | CCGC | 4 cut(s) | 73, 388, 1196, 2869 |
| AclWI | GGATC | 1 cut(s) | 731 |
| AcoI | YGGCCR | 1 cut(s) | 1915 |
| AcsI | RAATTY | 8 cut(s) | 100, 137, 256, 442, 747, 969, 1979, 2672 |
| AcuI | CTGAAG | 4 cut(s) | 278, 1629, 2262, 3042 |
| AcyI | GRCGYC | 1 cut(s) | 1078 |
| AfaI | GTAC | 5 cut(s) | 185, 543, 1943, 1968, 2148 |
| AfeI | AGCGCT | 1 cut(s) | 714 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 329, 1828, 1951, 2107, 2436, 2501 |
| AflII | CTTAAG | 1 cut(s) | 2039 |
| AflIII | ACRYGT | 2 cut(s) | 1562, 2766 |
| AjnI | CCWGG | 5 cut(s) | 1465, 1757, 1821, 2082, 2793 |
| Alw21I | GWGCWC | 3 cut(s) | 62, 247, 861 |
| Alw26I | GTCTC | 2 cut(s) | 1272, 1642 |
| AlwI | GGATC | 1 cut(s) | 731 |
| Ama87I | CYCGRG | 2 cut(s) | 2181, 2657 |
| Aor51HI | AGCGCT | 1 cut(s) | 714 |
| AoxI | GGCC | 7 cut(s) | 126, 697, 786, 990, 1617, 1760, 1915 |
| ApeKI | GCWGC | 6 cut(s) | 1091, 1298, 1568, 2440, 2563, 2738 |
| ApoI | RAATTY | 8 cut(s) | 100, 137, 256, 442, 747, 969, 1979, 2672 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 412, 444 |
| AseI | ATTAAT | 1 cut(s) | 342 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2768 |
| AspA2I | CCTAGG | 1 cut(s) | 269 |
| AspLEI | GCGC | 2 cut(s) | 715, 2656 |
| AspS9I | GGNCC | 6 cut(s) | 126, 266, 1396, 1755, 1819, 2177 |
| AsuC2I | CCSGG | 1 cut(s) | 755 |
| AsuHPI | GGTGA | 6 cut(s) | 75, 143, 899, 1657, 1820, 2608 |
| AsuII | TTCGAA | 3 cut(s) | 97, 305, 574 |
| AvaI | CYCGRG | 2 cut(s) | 2181, 2657 |
| AvaII | GGWCC | 5 cut(s) | 266, 1396, 1755, 1819, 2177 |
| AvrII | CCTAGG | 1 cut(s) | 269 |
| BalI | TGGCCA | 1 cut(s) | 1917 |
| BanII | GRGCYC | 5 cut(s) | 62, 247, 592, 861, 2761 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2858, 2890 |
| BauI | CACGAG | 1 cut(s) | 240 |
| BbsI | GAAGAC | 1 cut(s) | 2796 |
| Bbv12I | GWGCWC | 3 cut(s) | 62, 247, 861 |
| BbvCI | CCTCAGC | 1 cut(s) | 1614 |
| BbvI | GCAGC | 6 cut(s) | 1103, 1285, 1580, 2452, 2575, 2750 |
| BccI | CCATC | 5 cut(s) | 839, 1210, 2129, 2312, 2467 |
| BceAI | ACGGC | 1 cut(s) | 178 |
| BciT130I | CCWGG | 5 cut(s) | 1467, 1759, 1823, 2084, 2795 |
| BclI | TGATCA | 3 cut(s) | 1504, 1683, 2208 |
| BcnI | CCSGG | 1 cut(s) | 755 |
| BcoDI | GTCTC | 2 cut(s) | 1272, 1642 |
| BfaI | CTAG | 7 cut(s) | 123, 134, 270, 1877, 2171, 2601, 2825 |
| BfmI | CTRYAG | 1 cut(s) | 1627 |
| BfoI | RGCGCY | 2 cut(s) | 716, 2657 |
| BfrI | CTTAAG | 1 cut(s) | 2039 |
| BglII | AGATCT | 3 cut(s) | 2167, 2224, 3061 |
| BisI | GCNGC | 6 cut(s) | 1092, 1299, 1569, 2441, 2564, 2739 |
| BlnI | CCTAGG | 1 cut(s) | 269 |
| BlpI | GCTNAGC | 2 cut(s) | 166, 3039 |
| BlsI | GCNGC | 6 cut(s) | 1093, 1300, 1570, 2442, 2565, 2740 |
| BmcAI | AGTACT | 1 cut(s) | 2148 |
| Bme1390I | CCNGG | 6 cut(s) | 755, 1467, 1759, 1823, 2084, 2795 |
| Bme18I | GGWCC | 5 cut(s) | 266, 1396, 1755, 1819, 2177 |
| BmeT110I | CYCGRG | 2 cut(s) | 2181, 2657 |
| BmgT120I | GGNCC | 6 cut(s) | 126, 266, 1396, 1755, 1819, 2177 |
| BmiI | GGNNCC | 4 cut(s) | 1756, 2178, 2179, 2799 |
| BmrFI | CCNGG | 6 cut(s) | 755, 1467, 1759, 1823, 2084, 2795 |
| BpiI | GAAGAC | 1 cut(s) | 2796 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1614 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 166, 3039 |
| Bpu14I | TTCGAA | 3 cut(s) | 97, 305, 574 |
| BpuMI | CCSGG | 1 cut(s) | 755 |
| BsaAI | YACGTR | 1 cut(s) | 2447 |
| BsaHI | GRCGYC | 1 cut(s) | 1078 |
| BsaJI | CCNNGG | 4 cut(s) | 30, 269, 1025, 1912 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2130, 2160 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 329, 1828, 1951, 2107, 2436, 2501 |
| Bse3DI | GCAATG | 2 cut(s) | 675, 1137 |
| BseBI | CCWGG | 5 cut(s) | 1467, 1759, 1823, 2084, 2795 |
| BseDI | CCNNGG | 4 cut(s) | 30, 269, 1025, 1912 |
| BseGI | GGATG | 7 cut(s) | 607, 763, 802, 1141, 1666, 1837, 2096 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 329, 1828, 1951, 2107, 2436, 2501 |
| BseMI | GCAATG | 2 cut(s) | 675, 1137 |
| BseMII | CTCAG | 8 cut(s) | 260, 605, 936, 1605, 1815, 1974, 3021, 3030 |
| BseRI | GAGGAG | 2 cut(s) | 201, 381 |
| BseXI | GCAGC | 6 cut(s) | 1103, 1285, 1580, 2452, 2575, 2750 |
| BseYI | CCCAGC | 2 cut(s) | 580, 2741 |
| BsgI | GTGCAG | 1 cut(s) | 1587 |
| BshFI | GGCC | 7 cut(s) | 128, 699, 788, 992, 1619, 1762, 1917 |
| BsiHKAI | GWGCWC | 3 cut(s) | 62, 247, 861 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2181, 2657 |
| BsiSI | CCGG | 1 cut(s) | 755 |
| BslFI | GGGAC | 4 cut(s) | 1509, 1768, 2163, 2405 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 329, 1828, 1951, 2107, 2436, 2501 |
| BsmAI | GTCTC | 2 cut(s) | 1272, 1642 |
| BsmFI | GGGAC | 4 cut(s) | 1509, 1768, 2163, 2405 |
| BsmI | GAATGC | 1 cut(s) | 1456 |
| BsnI | GGCC | 7 cut(s) | 128, 699, 788, 992, 1619, 1762, 1917 |
| BsoBI | CYCGRG | 2 cut(s) | 2181, 2657 |
| Bsp119I | TTCGAA | 3 cut(s) | 97, 305, 574 |
| Bsp1286I | GDGCHC | 5 cut(s) | 62, 247, 592, 861, 2761 |
| Bsp143I | GATC | 8 cut(s) | 723, 1158, 1504, 1683, 2167, 2208, 2224, 3061 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 166, 3039 |
| Bsp19I | CCATGG | 1 cut(s) | 30 |
| BspACI | CCGC | 4 cut(s) | 73, 388, 1196, 2869 |
| BspANI | GGCC | 7 cut(s) | 128, 699, 788, 992, 1619, 1762, 1917 |
| BspCNI | CTCAG | 8 cut(s) | 259, 604, 937, 1606, 1814, 1973, 3020, 3031 |
| BspHI | TCATGA | 2 cut(s) | 2307, 2772 |
| BspLI | GGNNCC | 4 cut(s) | 1756, 2178, 2179, 2799 |
| BspPI | GGATC | 1 cut(s) | 731 |
| BspT104I | TTCGAA | 3 cut(s) | 97, 305, 574 |
| BspTI | CTTAAG | 1 cut(s) | 2039 |
| BsrDI | GCAATG | 2 cut(s) | 675, 1137 |
| BssECI | CCNNGG | 4 cut(s) | 30, 269, 1025, 1912 |
| BssMI | GATC | 8 cut(s) | 723, 1158, 1504, 1683, 2167, 2208, 2224, 3061 |
| BssNI | GRCGYC | 1 cut(s) | 1078 |
| BssSI | CACGAG | 1 cut(s) | 240 |
| BssT1I | CCWWGG | 4 cut(s) | 30, 269, 1025, 1912 |
| Bst2BI | CACGAG | 1 cut(s) | 240 |
| Bst2UI | CCWGG | 5 cut(s) | 1467, 1759, 1823, 2084, 2795 |
| Bst6I | CTCTTC | 1 cut(s) | 1736 |
| BstACI | GRCGYC | 1 cut(s) | 1078 |
| BstAFI | CTTAAG | 1 cut(s) | 2039 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1136, 1904 |
| BstBAI | YACGTR | 1 cut(s) | 2447 |
| BstBI | TTCGAA | 3 cut(s) | 97, 305, 574 |
| BstC8I | GCNNGC | 7 cut(s) | 697, 1900, 1909, 1919, 2336, 2607, 2646 |
| BstDSI | CCRYGG | 1 cut(s) | 30 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2105 |
| BstF5I | GGATG | 7 cut(s) | 607, 763, 802, 1141, 1666, 1837, 2096 |
| BstH2I | RGCGCY | 2 cut(s) | 716, 2657 |
| BstHHI | GCGC | 2 cut(s) | 715, 2656 |
| BstKTI | GATC | 8 cut(s) | 726, 1161, 1507, 1686, 2170, 2211, 2227, 3064 |
| BstMAI | GTCTC | 2 cut(s) | 1272, 1642 |
| BstMBI | GATC | 8 cut(s) | 723, 1158, 1504, 1683, 2167, 2208, 2224, 3061 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 21, 577, 1136, 1886, 1895, 1904, 1908, 2726, 2735 |
| BstNI | CCWGG | 5 cut(s) | 1467, 1759, 1823, 2084, 2795 |
| BstNSI | RCATGY | 5 cut(s) | 1566, 1902, 2338, 2648, 2770 |
| BstSCI | CCNGG | 6 cut(s) | 753, 1465, 1757, 1821, 2082, 2793 |
| BstSFI | CTRYAG | 1 cut(s) | 1627 |
| BstV1I | GCAGC | 6 cut(s) | 1103, 1285, 1580, 2452, 2575, 2750 |
| BstV2I | GAAGAC | 1 cut(s) | 2796 |
| BstX2I | RGATCY | 3 cut(s) | 2167, 2224, 3061 |
| BstYI | RGATCY | 3 cut(s) | 2167, 2224, 3061 |
| BsuRI | GGCC | 7 cut(s) | 128, 699, 788, 992, 1619, 1762, 1917 |
| BtgI | CCRYGG | 1 cut(s) | 30 |
| BtgZI | GCGATG | 1 cut(s) | 858 |
| BtsCI | GGATG | 7 cut(s) | 607, 763, 802, 1141, 1666, 1837, 2096 |
| BtsIMutI | CAGTG | 2 cut(s) | 302, 942 |
| Cac8I | GCNNGC | 7 cut(s) | 697, 1900, 1909, 1919, 2336, 2607, 2646 |
| CciI | TCATGA | 2 cut(s) | 2307, 2772 |
| CfoI | GCGC | 2 cut(s) | 715, 2656 |
| Cfr13I | GGNCC | 6 cut(s) | 126, 266, 1396, 1755, 1819, 2177 |
| CsiI | ACCWGGT | 1 cut(s) | 2082 |
| Csp6I | GTAC | 5 cut(s) | 184, 542, 1942, 1967, 2147 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 943, 978 |
| CviQI | GTAC | 5 cut(s) | 184, 542, 1942, 1967, 2147 |
| DpnI | GATC | 8 cut(s) | 725, 1160, 1506, 1685, 2169, 2210, 2226, 3063 |
| DpnII | GATC | 8 cut(s) | 723, 1158, 1504, 1683, 2167, 2208, 2224, 3061 |
| DraI | TTTAAA | 1 cut(s) | 2512 |
| EaeI | YGGCCR | 1 cut(s) | 1915 |
| Eam1104I | CTCTTC | 1 cut(s) | 1736 |
| EarI | CTCTTC | 1 cut(s) | 1736 |
| Ecl136II | GAGCTC | 3 cut(s) | 60, 245, 859 |
| Eco130I | CCWWGG | 4 cut(s) | 30, 269, 1025, 1912 |
| Eco147I | AGGCCT | 3 cut(s) | 699, 788, 992 |
| Eco24I | GRGCYC | 5 cut(s) | 62, 247, 592, 861, 2761 |
| Eco47I | GGWCC | 5 cut(s) | 266, 1396, 1755, 1819, 2177 |
| Eco47III | AGCGCT | 1 cut(s) | 714 |
| Eco53kI | GAGCTC | 3 cut(s) | 60, 245, 859 |
| Eco57I | CTGAAG | 4 cut(s) | 278, 1629, 2262, 3042 |
| Eco88I | CYCGRG | 2 cut(s) | 2181, 2657 |
| EcoICRI | GAGCTC | 3 cut(s) | 60, 245, 859 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2105 |
| EcoO109I | RGGNCCY | 4 cut(s) | 126, 266, 1755, 2177 |
| EcoRI | GAATTC | 2 cut(s) | 256, 969 |
| EcoRII | CCWGG | 5 cut(s) | 1465, 1757, 1821, 2082, 2793 |
| EcoT14I | CCWWGG | 4 cut(s) | 30, 269, 1025, 1912 |
| EcoT22I | ATGCAT | 2 cut(s) | 1585, 2646 |
| EcoT38I | GRGCYC | 5 cut(s) | 62, 247, 592, 861, 2761 |
| ErhI | CCWWGG | 4 cut(s) | 30, 269, 1025, 1912 |
| FaqI | GGGAC | 4 cut(s) | 1509, 1768, 2163, 2405 |
| FauNDI | CATATG | 3 cut(s) | 664, 1585, 2299 |
| FbaI | TGATCA | 3 cut(s) | 1504, 1683, 2208 |
| Fnu4HI | GCNGC | 6 cut(s) | 1092, 1299, 1569, 2441, 2564, 2739 |
| FokI | GGATG | 7 cut(s) | 614, 770, 809, 1148, 1673, 1844, 2083 |
| FriOI | GRGCYC | 5 cut(s) | 62, 247, 592, 861, 2761 |
| Fsp4HI | GCNGC | 6 cut(s) | 1092, 1299, 1569, 2441, 2564, 2739 |
| FspBI | CTAG | 7 cut(s) | 123, 134, 270, 1877, 2171, 2601, 2825 |
| GlaI | GCGC | 2 cut(s) | 714, 2655 |
| GluI | GCNGC | 6 cut(s) | 1092, 1299, 1569, 2441, 2564, 2739 |
| GsaI | CCCAGC | 2 cut(s) | 584, 2745 |
| HaeII | RGCGCY | 2 cut(s) | 716, 2657 |
| HaeIII | GGCC | 7 cut(s) | 128, 699, 788, 992, 1619, 1762, 1917 |
| HapII | CCGG | 1 cut(s) | 755 |
| HhaI | GCGC | 2 cut(s) | 715, 2656 |
| Hin1I | GRCGYC | 1 cut(s) | 1078 |
| Hin6I | GCGC | 2 cut(s) | 713, 2654 |
| HinP1I | GCGC | 2 cut(s) | 713, 2654 |
| HindIII | AAGCTT | 6 cut(s) | 92, 290, 1200, 1689, 1706, 1719 |
| HpaII | CCGG | 1 cut(s) | 755 |
| HphI | GGTGA | 6 cut(s) | 75, 143, 899, 1657, 1820, 2608 |
| Hpy166II | GTNNAC | 6 cut(s) | 207, 942, 1819, 1942, 1957, 2125 |
| Hpy8I | GTNNAC | 6 cut(s) | 207, 942, 1819, 1942, 1957, 2125 |
| HpyCH4IV | ACGT | 3 cut(s) | 1078, 2446, 2813 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 21, 577, 1136, 1886, 1895, 1904, 1908, 2726, 2735 |
| HpySE526I | ACGT | 3 cut(s) | 1078, 2446, 2813 |
| Hsp92I | GRCGYC | 1 cut(s) | 1078 |
| HspAI | GCGC | 2 cut(s) | 713, 2654 |
| KflI | GGGWCCC | 1 cut(s) | 2177 |
| Ksp22I | TGATCA | 3 cut(s) | 1504, 1683, 2208 |
| Kzo9I | GATC | 8 cut(s) | 723, 1158, 1504, 1683, 2167, 2208, 2224, 3061 |
| LmnI | GCTCC | 1 cut(s) | 2138 |
| Lsp1109I | GCAGC | 6 cut(s) | 1103, 1285, 1580, 2452, 2575, 2750 |
| MabI | ACCWGGT | 1 cut(s) | 2082 |
| MaeI | CTAG | 7 cut(s) | 123, 134, 270, 1877, 2171, 2601, 2825 |
| MaeII | ACGT | 3 cut(s) | 1078, 2446, 2813 |
| MaeIII | GTNAC | 7 cut(s) | 232, 525, 763, 2476, 2557, 2809, 2834 |
| MalI | GATC | 8 cut(s) | 725, 1160, 1506, 1685, 2169, 2210, 2226, 3063 |
| MboI | GATC | 8 cut(s) | 723, 1158, 1504, 1683, 2167, 2208, 2224, 3061 |
| MfeI | CAATTG | 1 cut(s) | 2547 |
| MflI | RGATCY | 3 cut(s) | 2167, 2224, 3061 |
| MhlI | GDGCHC | 5 cut(s) | 62, 247, 592, 861, 2761 |
| MlsI | TGGCCA | 1 cut(s) | 1917 |
| MluNI | TGGCCA | 1 cut(s) | 1917 |
| MlyI | GAGTC | 3 cut(s) | 1634, 2669, 2999 |
| MmeI | TCCRAC | 1 cut(s) | 599 |
| Mox20I | TGGCCA | 1 cut(s) | 1917 |
| Mph1103I | ATGCAT | 2 cut(s) | 1585, 2646 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2768 |
| MscI | TGGCCA | 1 cut(s) | 1917 |
| MslI | CAYNNNNRTG | 5 cut(s) | 561, 1478, 1793, 2771, 2777 |
| Msp20I | TGGCCA | 1 cut(s) | 1917 |
| MspA1I | CMGCKG | 1 cut(s) | 2741 |
| MspCI | CTTAAG | 1 cut(s) | 2039 |
| MspI | CCGG | 1 cut(s) | 755 |
| MspR9I | CCNGG | 6 cut(s) | 755, 1467, 1759, 1823, 2084, 2795 |
| MunI | CAATTG | 1 cut(s) | 2547 |
| Mva1269I | GAATGC | 1 cut(s) | 1456 |
| MvaI | CCWGG | 5 cut(s) | 1467, 1759, 1823, 2084, 2795 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 21, 577, 1136, 1886, 1895, 1904, 1908, 2726, 2735 |
| NciI | CCSGG | 1 cut(s) | 755 |
| NcoI | CCATGG | 1 cut(s) | 30 |
| NdeI | CATATG | 3 cut(s) | 664, 1585, 2299 |
| NdeII | GATC | 8 cut(s) | 723, 1158, 1504, 1683, 2167, 2208, 2224, 3061 |
| NlaIV | GGNNCC | 4 cut(s) | 1756, 2178, 2179, 2799 |
| NmuCI | GTSAC | 2 cut(s) | 232, 525 |
| NsiI | ATGCAT | 2 cut(s) | 1585, 2646 |
| NspI | RCATGY | 5 cut(s) | 1566, 1902, 2338, 2648, 2770 |
| NspV | TTCGAA | 3 cut(s) | 97, 305, 574 |
| PaeI | GCATGC | 3 cut(s) | 1902, 2338, 2648 |
| PaeR7I | CTCGAG | 1 cut(s) | 2657 |
| PagI | TCATGA | 2 cut(s) | 2307, 2772 |
| PceI | AGGCCT | 3 cut(s) | 699, 788, 992 |
| PciI | ACATGT | 2 cut(s) | 1562, 2766 |
| PctI | GAATGC | 1 cut(s) | 1456 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2768 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1951 |
| PfoI | TCCNGGA | 1 cut(s) | 753 |
| PkrI | GCNGC | 6 cut(s) | 1093, 1300, 1570, 2442, 2565, 2740 |
| PleI | GAGTC | 3 cut(s) | 1634, 2668, 2999 |
| PpsI | GAGTC | 3 cut(s) | 1634, 2668, 2999 |
| Ppu21I | YACGTR | 1 cut(s) | 2447 |
| PpuMI | RGGWCCY | 3 cut(s) | 266, 1755, 2177 |
| PscI | ACATGT | 2 cut(s) | 1562, 2766 |
| PshBI | ATTAAT | 1 cut(s) | 342 |
| PsiI | TTATAA | 2 cut(s) | 831, 1254 |
| Psp124BI | GAGCTC | 3 cut(s) | 62, 247, 861 |
| Psp5II | RGGWCCY | 3 cut(s) | 266, 1755, 2177 |
| Psp6I | CCWGG | 5 cut(s) | 1465, 1757, 1821, 2082, 2793 |
| PspFI | CCCAGC | 2 cut(s) | 580, 2741 |
| PspGI | CCWGG | 5 cut(s) | 1465, 1757, 1821, 2082, 2793 |
| PspN4I | GGNNCC | 4 cut(s) | 1756, 2178, 2179, 2799 |
| PspPI | GGNCC | 6 cut(s) | 126, 266, 1396, 1755, 1819, 2177 |
| PspPPI | RGGWCCY | 3 cut(s) | 266, 1755, 2177 |
| PspXI | VCTCGAGB | 1 cut(s) | 2657 |
| PsuI | RGATCY | 3 cut(s) | 2167, 2224, 3061 |
| PvuII | CAGCTG | 1 cut(s) | 2741 |
| RsaI | GTAC | 5 cut(s) | 185, 543, 1943, 1968, 2148 |
| RsaNI | GTAC | 5 cut(s) | 184, 542, 1942, 1967, 2147 |
| RseI | CAYNNNNRTG | 5 cut(s) | 561, 1478, 1793, 2771, 2777 |
| SacI | GAGCTC | 3 cut(s) | 62, 247, 861 |
| SatI | GCNGC | 6 cut(s) | 1092, 1299, 1569, 2441, 2564, 2739 |
| Sau3AI | GATC | 8 cut(s) | 723, 1158, 1504, 1683, 2167, 2208, 2224, 3061 |
| Sau96I | GGNCC | 6 cut(s) | 126, 266, 1396, 1755, 1819, 2177 |
| ScaI | AGTACT | 1 cut(s) | 2148 |
| SchI | GAGTC | 3 cut(s) | 1634, 2669, 2999 |
| ScrFI | CCNGG | 6 cut(s) | 755, 1467, 1759, 1823, 2084, 2795 |
| SduI | GDGCHC | 5 cut(s) | 62, 247, 592, 861, 2761 |
| SexAI | ACCWGGT | 1 cut(s) | 2082 |
| SfcI | CTRYAG | 1 cut(s) | 1627 |
| Sfr274I | CTCGAG | 1 cut(s) | 2657 |
| SfuI | TTCGAA | 3 cut(s) | 97, 305, 574 |
| SinI | GGWCC | 5 cut(s) | 266, 1396, 1755, 1819, 2177 |
| SlaI | CTCGAG | 1 cut(s) | 2657 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 561, 1478, 1793, 2771, 2777 |
| SmlI | CTYRAG | 3 cut(s) | 2039, 2657, 3065 |
| SmoI | CTYRAG | 3 cut(s) | 2039, 2657, 3065 |
| SphI | GCATGC | 3 cut(s) | 1902, 2338, 2648 |
| SseBI | AGGCCT | 3 cut(s) | 699, 788, 992 |
| SsiI | CCGC | 4 cut(s) | 73, 388, 1196, 2869 |
| SspI | AATATT | 2 cut(s) | 220, 1291 |
| SspMI | CTAG | 7 cut(s) | 123, 134, 270, 1877, 2171, 2601, 2825 |
| SstI | GAGCTC | 3 cut(s) | 62, 247, 861 |
| StuI | AGGCCT | 3 cut(s) | 699, 788, 992 |
| StyD4I | CCNGG | 6 cut(s) | 753, 1465, 1757, 1821, 2082, 2793 |
| StyI | CCWWGG | 4 cut(s) | 30, 269, 1025, 1912 |
| TaiI | ACGT | 3 cut(s) | 1081, 2449, 2816 |
| TatI | WGTACW | 2 cut(s) | 1966, 2146 |
| TscAI | CASTG | 2 cut(s) | 302, 949 |
| TseFI | GTSAC | 2 cut(s) | 232, 525 |
| TseI | GCWGC | 6 cut(s) | 1091, 1298, 1568, 2440, 2563, 2738 |
| Tsp45I | GTSAC | 2 cut(s) | 232, 525 |
| TspRI | CASTG | 2 cut(s) | 302, 949 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1951 |
| Vha464I | CTTAAG | 1 cut(s) | 2039 |
| VpaK11BI | GGWCC | 5 cut(s) | 266, 1396, 1755, 1819, 2177 |
| VspI | ATTAAT | 1 cut(s) | 342 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2105 |
| XapI | RAATTY | 8 cut(s) | 100, 137, 256, 442, 747, 969, 1979, 2672 |
| XbaI | TCTAGA | 2 cut(s) | 133, 2170 |
| XceI | RCATGY | 5 cut(s) | 1566, 1902, 2338, 2648, 2770 |
| XhoI | CTCGAG | 1 cut(s) | 2657 |
| XmaJI | CCTAGG | 1 cut(s) | 269 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2768 |
| XspI | CTAG | 7 cut(s) | 123, 134, 270, 1877, 2171, 2601, 2825 |
| ZraI | GACGTC | 1 cut(s) | 1079 |
| ZrmI | AGTACT | 1 cut(s) | 2148 |
| Zsp2I | ATGCAT | 2 cut(s) | 1585, 2646 |