Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014465

Physical Location & Seq

Genomic Coordinates Reverse (-)

81541684 .. 81547797

Gene Structure 6114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG584300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3063 bp

ATGCTTCACTGCCAGAGCTACAATTCCAGAGAATTAGGGCAAGAAAGTCTCCACAGCTCAATGCAAGGCCACACCTTTTCACCAAGTAAGCTTCAAAACCCCCAATCTAATTTCACTACTAGGCCTCTTCTAGGGTTTCGTTTCACTCCCCACAACCATAGCTTAGCTAAAACCCAACTATGCCCTGTTCCAATTTCTCAAAAGGGTAGCTGTATTGTGGGTTCACGACCTCAGAAGCAGAGTTCAAGAGGGTCTAGGGTTTATGTAGGGTTTAAGCCTCAGTGTCATTCGAAAGCATTGGTTTTGCCCACGAAGGTTTCTTTAGTTAATGGTAAGAAGAAGAGGTATGGAGGCGTGTTGCCTTCGATTTTGAGGTCTTTGGAGTCTGAAAACGATGTTGAAAAGGCACTCAAGTCGTTTGGGGAGAGTCTGAGTGCGAAAGAACAGACTGTGATTCTCAAAGAACAGAGGAGCTGGGAGAGAGTTCTTCGTGTTTTCGAGTGGTTCAAGTCACAGAAAGAGTATGTACCCAATGTGATTCACTACAATGTGGTGCTTCGGGTGCTTGGTAGAGCTCAGAGATGGGATGAGCTGAGGCTTTGTTGGGTTGAAATGGCGAAAAAGGGTGTCCTGCCGACTAACAATACGTATTCCATGCTTGTTGATGTGTATGGGAAAGCGGGACTTGTGAAGGAGGCCCTGTTGTGGATTAAGCACATGAAGCTAAGGGGGCTTTTCCCGGATGAGGTTACAATGAATACGGTTGTTCGGGCATTGAAGAATGCAGAAGAGTTTGATAGGGCGGATAAGTTTTATAAGGACTGGTGTACTGGGCGGATTGAGCTCGATGACCTTGAGTTGGATTCTATGGCTGATTCTGTGATTGGTTCTGTTTCGGAACCTATTAGTTTCAAGCATTTCTTGTCCACTGAGCTATTCAGGACTGGTGGGAGAGTTCCCACTTCAAAAATTATGACCTCAATGGATACAGAGAACTCTATTCAGAAACCACGACTTACATCTACCTATAATAGTTTGATTGATTTGTATGGAAAGGCAGGGCGTCTGAATGATGCGGCTAATGTGTTTGGAAATATGATGAAGTCTGGAGTGGCAATGGATGTTATTACTTTTAATACTATGATCTTTACTTGTGGAAGTCATGGGCATTTGTTGGAGGCGGAAGCTTTGCTTAGTAAGATGGAAGAAAGGGGTATATCTCCTGATACAAGAACTTATAACATTTTTCTATCTCTGTATGCTGATGTGGGGAACATTGATGCTGCTCTGAACTGCTACAGGAAGATCAGAGAGGTAGGTCTTTACCCGGATATTGTATCTCACCGGACTATTCTTCATGTATTATGTGAGAGAAACATGGTCAGAGATGTGGAGATTGTGATTGAGGATATGGAGAAATCTGGTGTCTCTATTAATGAGCATTCTCTTCCTGGTATCATCAAGATGTATATTAATGAAGGACGGCTTGATCAGGCAAACTTACTTTATGAGAAATGTCAGTTAAACCGTGGGATTTCATCAAAGACGCGTGCAGCAATTATAGATGCATATGCTGAAAAGGGACTTTGGACTGAAGCCGAGGTCGTATTCTATAGGAAGGGAGATTTGGTTGGACAGACGAAGGATATTGTGGAATACAATGTTATGATCAAAGCGTATGGTAAGGCAAGGCTTTATGACAAAGCTTTCTCTCTCTTCAGGGGCATGAAAAAGCATGGGACTTGGCCCGATGAGTGCACTTACAACTCTCTCATCCAAATGTTCTCCGGAGGTGATTTAGTGGACCAAGCAAGGGATCTTCTAACAGAAATGCAGGAAACTGGTCTGAAGCCTCAATCTCTAACCTTTTCTGCTCTTATTGCCTGCTATGCTCGCCTTGGCCAGCTTTCGGATGCAGTTGATGTGTACCAAGACTTTGTAAAGTCAGGAACAAAGCCAAATGAGTTTGTGTACGGTTCTTTAATCAATGGATTCGCAGAAACTGGCAGAGTTGAAGAAGCACTGAAGTATTTTCACCACATGGAAGAATCGGGGATAACTGCAAATCAAATAGTTCTGACATCTCTGATAAAGGCGTATAGTAAGGCGGGAAGCCGTGATGGAGCAGAAGTGTTGTATGAGAGGTTGAAAGGTTTTGATGGTGGCCCAGACGTTGTTGCATCTAACAGTATGATAAATCTGTATGCAGATCTTGGGTTGGTATCTGAAGCCAAATTGATTTTTGAAAATTTGAGAGCGAAAGGTTGGGCTGATGAGATAGCGTTTGCAACCATGATGTATCTGTACAAGAGCATGGGCATGCTTGATGAGGCCATTGATGTAGCAGAGGAAATGAAAGAATCGGGTTTAATAAGGGACTGCGCTTCATTTAACAAGGTGATGTCATGCTATGCCATTAACGGGCAGCTACGTGAATGCGGTGAATTATTGCACGAGATGGTAACTCGGAAACTGTTGCTTGACAGTGGAACTTGTAATGTATTGTTCACTGTATTGAGAAAAGGAGGGATTCCCATTGAAGCTGTAACCCAGCTAGAGTCATCTTACCAGGAAGGGAAACCTTACTCTAGACAAGCTATCATCACCTCTGTGTTCTCTCTGGTTGGTATGCATGGTTTGGCACTCGAATCCTGTGAAACATTCACAAAAGCTGACATAAATCTTGATTCTTTTCTCTACAATGTTGCGATATATGCTTATGGGGCAGCTGGGGAGATTGACAAGGCTCTGAACATTTTCATGAGAATGCAGGATGAAGGTGTGGAACCAGACCTTGTAACGCATATTTTCCTAGTAGGTTGTTATGGAAAAGCAGGTATGGTTGAAGGAGTGAAGAGAATTTACAGCCAGCTGAAATATGAAGAGATAGAGCCTAATCCGTCCTTGTTCAGAGCTGTTATAGATGCCTATACAGATGCCAATAGGCATGACCTTGCCAAATTGGTTAAGCAAGACAGGAAATATGCATTTGACTCGGAACGTCATGTAGATTCCGAAACCAAAGATGAGTTTGATGACACTACTTCAGAGTTTGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1020

Amino Acids

114.69

Weight (kDa)

6.07

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	177 - 224	1.1e-07	PPR repeat family
PPR_long	PF17177	340 - 505	5.7e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	341 - 385	3.4e-11	PPR repeat family
PPR	PF01535	341 - 371	1.8e-06	PPR repeat
PPR_1	PF12854	370 - 402	8.3e-06	PPR repeat
PPR_2	PF13041	374 - 420	7.7e-12	PPR repeat family
PPR_3	PF13812	397 - 455	9.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	409 - 456	5e-07	PPR repeat family
PPR_2	PF13041	548 - 595	7.4e-13	PPR repeat family
PPR_3	PF13812	549 - 596	2.4e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	551 - 646	1.2e-09	Fungal tetratrico peptide repeats
PPR	PF01535	553 - 580	3.9e-07	PPR repeat
PPR_long	PF17177	566 - 679	5.9e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	583 - 632	5e-09	PPR repeat family
PPR_2	PF13041	618 - 666	3.8e-09	PPR repeat family
PPR_1	PF12854	650 - 682	3.4e-06	PPR repeat
PPR_2	PF13041	654 - 702	6.6e-08	PPR repeat family
PPR	PF01535	657 - 686	8.6e-07	PPR repeat
PPR_3	PF13812	890 - 944	6.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	896 - 939	3e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73710
fragaria_vesca	FvH4_6g44930
malus_domestica	MD09G1091700.v1.1 MD17G1081600.v1.1
prunus_persica	Prupe.3G233300_v2.0.a1
pyrus_communis	pycom09g01730 pycom17g07990
rosa_chinensis	RchiOBHm_Chr2g0162121
rosa_laevigata	RLG00000021324
rosa_multiflora	Rmu_sc0004020.1_g000031
rosa_roxburghii	Rroxscaffold_2G00088280
rosa_rugosa	Rorug02G0494800
rosa_samantha	Rh2AG561300 Rh2BG574400 Rh2CG544500 Rh2DG584300
rosa_wichuraiana	Rw2G046480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	816, 1239
Acc36I	ACCTGC	1 cut(s)	2825
AccII	CGCG	1 cut(s)	1549
AccIII	TCCGGA	1 cut(s)	1787
AciI	CCGC	7 cut(s)	680, 803, 835, 1076, 1181, 2108, 2439
AclWI	GGATC	1 cut(s)	1824
AcoI	YGGCCR	1 cut(s)	1900
AcsI	RAATTY	2 cut(s)	2248, 2859
AcuI	CTGAAG	6 cut(s)	1614, 1702, 1868, 2045, 2247, 3030
AcyI	GRCGYC	1 cut(s)	1063
AfaI	GTAC	5 cut(s)	528, 829, 1928, 1973, 2306
AfiI	CCNNNNNNNGG	7 cut(s)	131, 705, 745, 859, 1813, 1909, 2421
AflIII	ACRYGT	1 cut(s)	1547
AjnI	CCWGG	2 cut(s)	1450, 2568
AjuI	GAANNNNNNNTTGG	2 cut(s)	1610, 1642
AleI	CACNNNNGTG	1 cut(s)	2609
Alw21I	GWGCWC	3 cut(s)	577, 846, 1760
Alw26I	GTCTC	2 cut(s)	53, 1432
Alw44I	GTGCAC	1 cut(s)	1756
AlwI	GGATC	1 cut(s)	1824
AlwNI	CAGNNNCTG	1 cut(s)	2003
Aor13HI	TCCGGA	1 cut(s)	1787
AoxI	GGCC	7 cut(s)	67, 122, 696, 1745, 1900, 2164, 2331
ApaLI	GTGCAC	1 cut(s)	1756
ApeKI	GCWGC	4 cut(s)	1283, 1553, 2425, 2726
ApoI	RAATTY	2 cut(s)	2248, 2859
AseI	ATTAAT	2 cut(s)	1434, 1473
Asp700I	GAANNNNTTC	1 cut(s)	2756
AspLEI	GCGC	1 cut(s)	2384
AspS9I	GGNCC	4 cut(s)	697, 1746, 1804, 2165
AsuC2I	CCSGG	2 cut(s)	740, 1328
AsuHPI	GGTGA	7 cut(s)	72, 1334, 1805, 2027, 2410, 2453, 2596
AsuII	TTCGAA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	1804
BaeGI	GKGCMC	1 cut(s)	1760
BalI	TGGCCA	1 cut(s)	1902
BanII	GRGCYC	2 cut(s)	577, 846
BarI	GAAGNNNNNNTAC	2 cut(s)	2846, 2878
BauI	CACGAG	1 cut(s)	2453
Bbv12I	GWGCWC	3 cut(s)	577, 846, 1760
BbvCI	CCTCAGC	1 cut(s)	593
BbvI	GCAGC	4 cut(s)	1270, 1565, 2437, 2738
BccI	CCATC	5 cut(s)	576, 1195, 2114, 2153, 2452
BceAI	ACGGC	2 cut(s)	1499, 2100
BcgI	CGANNNNNNTGC	4 cut(s)	396, 430, 2976, 3010
BciT130I	CCWGG	2 cut(s)	1452, 2570
BciVI	GTATCC	1 cut(s)	979
BclI	TGATCA	2 cut(s)	1489, 1668
BcnI	CCSGG	2 cut(s)	740, 1328
BcoDI	GTCTC	2 cut(s)	53, 1432
BfaI	CTAG	6 cut(s)	120, 131, 255, 2555, 2589, 2813
BfmI	CTRYAG	2 cut(s)	1297, 1612
BfuAI	ACCTGC	1 cut(s)	2825
BfuI	GTATCC	1 cut(s)	979
BglII	AGATCT	1 cut(s)	2209
BisI	GCNGC	5 cut(s)	1077, 1284, 1554, 2426, 2727
BlpI	GCTNAGC	1 cut(s)	163
BlsI	GCNGC	5 cut(s)	1078, 1285, 1555, 2427, 2728
Bme1390I	CCNGG	4 cut(s)	740, 1328, 1452, 2570
Bme18I	GGWCC	1 cut(s)	1804
BmgT120I	GGNCC	4 cut(s)	697, 1746, 1804, 2165
BmiI	GGNNCC	2 cut(s)	900, 2787
BmrFI	CCNGG	4 cut(s)	740, 1328, 1452, 2570
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	7 cut(s)	1063, 1270, 1555, 1903, 2189, 2914, 2926
BmuI	ACTGGG	1 cut(s)	840
BpmI	CTGGAG	1 cut(s)	1128
Bpu10I	CCTNAGC	2 cut(s)	593, 725
Bpu1102I	GCTNAGC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	2 cut(s)	395, 875
BpuMI	CCSGG	2 cut(s)	740, 1328
BsaAI	YACGTR	2 cut(s)	648, 2432
BsaHI	GRCGYC	1 cut(s)	1063
BsaJI	CCNNGG	3 cut(s)	1528, 1599, 1897
BsaWI	WCCGGW	2 cut(s)	1344, 1787
BsaXI	ACNNNNNCTCC	6 cut(s)	686, 716, 1614, 1644, 2115, 2145
Bsc4I	CCNNNNNNNGG	7 cut(s)	131, 705, 745, 859, 1813, 1909, 2421
Bse1I	ACTGG	5 cut(s)	827, 835, 949, 1846, 2008
Bse3DI	GCAATG	1 cut(s)	1122
BseAI	TCCGGA	1 cut(s)	1787
BseBI	CCWGG	2 cut(s)	1452, 2570
BseDI	CCNNGG	3 cut(s)	1528, 1599, 1897
BseGI	GGATG	6 cut(s)	592, 748, 1126, 1773, 1918, 2779
BseLI	CCNNNNNNNGG	7 cut(s)	131, 705, 745, 859, 1813, 1909, 2421
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	6 cut(s)	245, 293, 422, 584, 590, 921
BseNI	ACTGG	5 cut(s)	827, 835, 949, 1846, 2008
BseRI	GAGGAG	1 cut(s)	484
BseSI	GKGCMC	1 cut(s)	1760
BseXI	GCAGC	4 cut(s)	1270, 1565, 2437, 2738
BseYI	CCCAGC	3 cut(s)	474, 2550, 2729
BsgI	GTGCAG	1 cut(s)	1572
Bsh1236I	CGCG	1 cut(s)	1549
BshFI	GGCC	7 cut(s)	69, 124, 698, 1747, 1902, 2166, 2333
BsiHKAI	GWGCWC	3 cut(s)	577, 846, 1760
BsiSI	CCGG	4 cut(s)	740, 1328, 1345, 1788
BslFI	GGGAC	4 cut(s)	696, 1596, 1753, 2390
BslI	CCNNNNNNNGG	7 cut(s)	131, 705, 745, 859, 1813, 1909, 2421
BsmAI	GTCTC	2 cut(s)	53, 1432
BsmFI	GGGAC	4 cut(s)	696, 1596, 1753, 2390
BsmI	GAATGC	4 cut(s)	787, 1441, 2441, 2772
BsnI	GGCC	7 cut(s)	69, 124, 698, 1747, 1902, 2166, 2333
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	3 cut(s)	577, 846, 1760
Bsp13I	TCCGGA	1 cut(s)	1787
Bsp1407I	TGTACA	1 cut(s)	2304
Bsp143I	GATC	6 cut(s)	1143, 1305, 1489, 1668, 1816, 2209
Bsp1720I	GCTNAGC	1 cut(s)	163
BspACI	CCGC	7 cut(s)	680, 803, 835, 1076, 1181, 2108, 2439
BspANI	GGCC	7 cut(s)	69, 124, 698, 1747, 1902, 2166, 2333
BspCNI	CTCAG	6 cut(s)	244, 292, 423, 585, 589, 922
BspEI	TCCGGA	1 cut(s)	1787
BspFNI	CGCG	1 cut(s)	1549
BspHI	TCATGA	1 cut(s)	2760
BspLI	GGNNCC	2 cut(s)	900, 2787
BspMI	ACCTGC	1 cut(s)	2825
BspPI	GGATC	1 cut(s)	1824
BspT104I	TTCGAA	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	1122
BsrGI	TGTACA	1 cut(s)	2304
BsrI	ACTGG	5 cut(s)	827, 835, 949, 1846, 2008
BssECI	CCNNGG	3 cut(s)	1528, 1599, 1897
BssMI	GATC	6 cut(s)	1143, 1305, 1489, 1668, 1816, 2209
BssNI	GRCGYC	1 cut(s)	1063
BssSI	CACGAG	1 cut(s)	2453
BssT1I	CCWWGG	1 cut(s)	1897
Bst2BI	CACGAG	1 cut(s)	2453
Bst2UI	CCWGG	2 cut(s)	1452, 2570
Bst4CI	ACNGT	8 cut(s)	451, 763, 1529, 1976, 2189, 2475, 2486, 2512
Bst6I	CTCTTC	7 cut(s)	132, 335, 783, 1452, 1721, 2849, 2877
BstACI	GRCGYC	1 cut(s)	1063
BstAUI	TGTACA	1 cut(s)	2304
BstBAI	YACGTR	2 cut(s)	648, 2432
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	6 cut(s)	1551, 1885, 1894, 1904, 2321, 2870
BstDEI	CTNAG	9 cut(s)	163, 231, 279, 431, 576, 593, 725, 930, 1193
BstDSI	CCRYGG	1 cut(s)	1528
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	6 cut(s)	592, 748, 1126, 1773, 1918, 2779
BstFNI	CGCG	1 cut(s)	1549
BstHHI	GCGC	1 cut(s)	2384
BstKTI	GATC	6 cut(s)	1146, 1308, 1492, 1671, 1819, 2212
BstMAI	GTCTC	2 cut(s)	53, 1432
BstMBI	GATC	6 cut(s)	1143, 1305, 1489, 1668, 1816, 2209
BstMWI	GCNNNNNNNGC	9 cut(s)	562, 721, 730, 841, 1880, 1889, 1893, 2714, 2723
BstNI	CCWGG	2 cut(s)	1452, 2570
BstNSI	RCATGY	1 cut(s)	2323
BstSCI	CCNGG	4 cut(s)	738, 1326, 1450, 2568
BstSFI	CTRYAG	2 cut(s)	1297, 1612
BstSLI	GKGCMC	1 cut(s)	1760
BstSNI	TACGTA	1 cut(s)	648
BstUI	CGCG	1 cut(s)	1549
BstV1I	GCAGC	4 cut(s)	1270, 1565, 2437, 2738
BstX2I	RGATCY	2 cut(s)	1816, 2209
BstYI	RGATCY	2 cut(s)	1816, 2209
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	7 cut(s)	69, 124, 698, 1747, 1902, 2166, 2333
BtgI	CCRYGG	1 cut(s)	1528
BtsCI	GGATG	6 cut(s)	592, 748, 1126, 1773, 1918, 2779
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	6 cut(s)	7, 287, 927, 2021, 2491, 2508
BveI	ACCTGC	1 cut(s)	2825
Cac8I	GCNNGC	6 cut(s)	1551, 1885, 1894, 1904, 2321, 2870
CaiI	CAGNNNCTG	1 cut(s)	2003
CciI	TCATGA	1 cut(s)	2760
CfoI	GCGC	1 cut(s)	2384
Cfr13I	GGNCC	4 cut(s)	697, 1746, 1804, 2165
CseI	GACGC	2 cut(s)	1052, 1555
Csp6I	GTAC	5 cut(s)	527, 828, 1927, 1972, 2305
CviQI	GTAC	5 cut(s)	527, 828, 1927, 1972, 2305
DdeI	CTNAG	9 cut(s)	163, 231, 279, 431, 576, 593, 725, 930, 1193
DpnI	GATC	6 cut(s)	1145, 1307, 1491, 1670, 1818, 2211
DpnII	GATC	6 cut(s)	1143, 1305, 1489, 1668, 1816, 2209
EaeI	YGGCCR	1 cut(s)	1900
Eam1104I	CTCTTC	7 cut(s)	132, 335, 783, 1452, 1721, 2849, 2877
EarI	CTCTTC	7 cut(s)	132, 335, 783, 1452, 1721, 2849, 2877
EciI	GGCGGA	3 cut(s)	818, 850, 1196
Ecl136II	GAGCTC	2 cut(s)	575, 844
Eco105I	TACGTA	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	1897
Eco147I	AGGCCT	1 cut(s)	124
Eco24I	GRGCYC	2 cut(s)	577, 846
Eco47I	GGWCC	1 cut(s)	1804
Eco53kI	GAGCTC	2 cut(s)	575, 844
Eco57I	CTGAAG	6 cut(s)	1614, 1702, 1868, 2045, 2247, 3030
EcoICRI	GAGCTC	2 cut(s)	575, 844
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRII	CCWGG	2 cut(s)	1450, 2568
EcoT14I	CCWWGG	1 cut(s)	1897
EcoT22I	ATGCAT	3 cut(s)	1570, 2634, 2989
EcoT38I	GRGCYC	2 cut(s)	577, 846
ErhI	CCWWGG	1 cut(s)	1897
FalI	AAGNNNNNCTT	8 cut(s)	669, 701, 905, 937, 1176, 1208, 1470, 1502
FaqI	GGGAC	4 cut(s)	696, 1596, 1753, 2390
FauI	CCCGC	2 cut(s)	673, 2101
FauNDI	CATATG	1 cut(s)	1570
FbaI	TGATCA	2 cut(s)	1489, 1668
Fnu4HI	GCNGC	5 cut(s)	1077, 1284, 1554, 2426, 2727
FokI	GGATG	6 cut(s)	599, 755, 1133, 1760, 1925, 2786
FriOI	GRGCYC	2 cut(s)	577, 846
Fsp4HI	GCNGC	5 cut(s)	1077, 1284, 1554, 2426, 2727
FspBI	CTAG	6 cut(s)	120, 131, 255, 2555, 2589, 2813
GlaI	GCGC	1 cut(s)	2383
GluI	GCNGC	5 cut(s)	1077, 1284, 1554, 2426, 2727
GsaI	CCCAGC	3 cut(s)	478, 2554, 2733
GsuI	CTGGAG	1 cut(s)	1128
HaeIII	GGCC	7 cut(s)	69, 124, 698, 1747, 1902, 2166, 2333
HapII	CCGG	4 cut(s)	740, 1328, 1345, 1788
HgaI	GACGC	2 cut(s)	1052, 1555
HhaI	GCGC	1 cut(s)	2384
Hin1I	GRCGYC	1 cut(s)	1063
Hin6I	GCGC	1 cut(s)	2382
HinP1I	GCGC	1 cut(s)	2382
HindIII	AAGCTT	3 cut(s)	89, 1185, 1704
HpaII	CCGG	4 cut(s)	740, 1328, 1345, 1788
HphI	GGTGA	7 cut(s)	72, 1334, 1805, 2027, 2410, 2453, 2596
Hpy166II	GTNNAC	8 cut(s)	224, 828, 927, 1758, 1804, 1927, 1972, 2508
Hpy8I	GTNNAC	8 cut(s)	224, 828, 927, 1758, 1804, 1927, 1972, 2508
HpyAV	CCTTC	9 cut(s)	307, 372, 685, 1472, 1612, 1636, 2567, 2771, 2840
HpyCH4III	ACNGT	8 cut(s)	451, 763, 1529, 1976, 2189, 2475, 2486, 2512
HpyCH4IV	ACGT	4 cut(s)	647, 2172, 2431, 3001
HpyF10VI	GCNNNNNNNGC	9 cut(s)	562, 721, 730, 841, 1880, 1889, 1893, 2714, 2723
HpyF3I	CTNAG	9 cut(s)	163, 231, 279, 431, 576, 593, 725, 930, 1193
HpySE526I	ACGT	4 cut(s)	647, 2172, 2431, 3001
Hsp92I	GRCGYC	1 cut(s)	1063
HspAI	GCGC	1 cut(s)	2382
Kpn2I	TCCGGA	1 cut(s)	1787
Ksp22I	TGATCA	2 cut(s)	1489, 1668
Kzo9I	GATC	6 cut(s)	1143, 1305, 1489, 1668, 1816, 2209
LmnI	GCTCC	2 cut(s)	471, 2123
Lsp1109I	GCAGC	4 cut(s)	1270, 1565, 2437, 2738
LweI	GCATC	7 cut(s)	1063, 1270, 1555, 1903, 2189, 2914, 2926
MaeI	CTAG	6 cut(s)	120, 131, 255, 2555, 2589, 2813
MaeII	ACGT	4 cut(s)	647, 2172, 2431, 3001
MaeIII	GTNAC	5 cut(s)	510, 748, 2461, 2545, 2797
MalI	GATC	6 cut(s)	1145, 1307, 1491, 1670, 1818, 2211
MboI	GATC	6 cut(s)	1143, 1305, 1489, 1668, 1816, 2209
MflI	RGATCY	2 cut(s)	1816, 2209
MhlI	GDGCHC	3 cut(s)	577, 846, 1760
MlsI	TGGCCA	1 cut(s)	1902
MluI	ACGCGT	1 cut(s)	1547
MluNI	TGGCCA	1 cut(s)	1902
MlyI	GAGTC	4 cut(s)	392, 436, 2567, 2987
MmeI	TCCRAC	3 cut(s)	840, 1155, 1612
Mox20I	TGGCCA	1 cut(s)	1902
Mph1103I	ATGCAT	3 cut(s)	1570, 2634, 2989
MroI	TCCGGA	1 cut(s)	1787
MroXI	GAANNNNTTC	1 cut(s)	2756
MscI	TGGCCA	1 cut(s)	1902
MslI	CAYNNNNRTG	7 cut(s)	546, 1463, 1778, 2318, 2609, 2759, 2765
Msp20I	TGGCCA	1 cut(s)	1902
MspA1I	CMGCKG	2 cut(s)	2729, 2872
MspI	CCGG	4 cut(s)	740, 1328, 1345, 1788
MspR9I	CCNGG	4 cut(s)	740, 1328, 1452, 2570
Mva1269I	GAATGC	4 cut(s)	787, 1441, 2441, 2772
MvaI	CCWGG	2 cut(s)	1452, 2570
MvnI	CGCG	1 cut(s)	1549
MwoI	GCNNNNNNNGC	9 cut(s)	562, 721, 730, 841, 1880, 1889, 1893, 2714, 2723
NciI	CCSGG	2 cut(s)	740, 1328
NdeI	CATATG	1 cut(s)	1570
NdeII	GATC	6 cut(s)	1143, 1305, 1489, 1668, 1816, 2209
NlaIV	GGNNCC	2 cut(s)	900, 2787
NmeAIII	GCCGAG	1 cut(s)	1624
NmuCI	GTSAC	1 cut(s)	510
NsiI	ATGCAT	3 cut(s)	1570, 2634, 2989
NspI	RCATGY	1 cut(s)	2323
NspV	TTCGAA	1 cut(s)	290
OliI	CACNNNNGTG	1 cut(s)	2609
PaeI	GCATGC	1 cut(s)	2323
PagI	TCATGA	1 cut(s)	2760
PceI	AGGCCT	1 cut(s)	124
PctI	GAATGC	4 cut(s)	787, 1441, 2441, 2772
PdmI	GAANNNNTTC	1 cut(s)	2756
PfoI	TCCNGGA	1 cut(s)	738
PkrI	GCNGC	5 cut(s)	1078, 1285, 1555, 2427, 2728
PleI	GAGTC	4 cut(s)	391, 435, 2566, 2987
PpsI	GAGTC	4 cut(s)	391, 435, 2566, 2987
Ppu21I	YACGTR	2 cut(s)	648, 2432
PshBI	ATTAAT	2 cut(s)	1434, 1473
PsiI	TTATAA	2 cut(s)	816, 1239
Psp124BI	GAGCTC	2 cut(s)	577, 846
Psp6I	CCWGG	2 cut(s)	1450, 2568
PspFI	CCCAGC	3 cut(s)	474, 2550, 2729
PspGI	CCWGG	2 cut(s)	1450, 2568
PspN4I	GGNNCC	2 cut(s)	900, 2787
PspPI	GGNCC	4 cut(s)	697, 1746, 1804, 2165
PsrI	GAACNNNNNNTAC	2 cut(s)	205, 237
PstNI	CAGNNNCTG	1 cut(s)	2003
PsuI	RGATCY	2 cut(s)	1816, 2209
PvuII	CAGCTG	2 cut(s)	2729, 2872
RsaI	GTAC	5 cut(s)	528, 829, 1928, 1973, 2306
RsaNI	GTAC	5 cut(s)	527, 828, 1927, 1972, 2305
RseI	CAYNNNNRTG	7 cut(s)	546, 1463, 1778, 2318, 2609, 2759, 2765
SacI	GAGCTC	2 cut(s)	577, 846
SatI	GCNGC	5 cut(s)	1077, 1284, 1554, 2426, 2727
Sau3AI	GATC	6 cut(s)	1143, 1305, 1489, 1668, 1816, 2209
Sau96I	GGNCC	4 cut(s)	697, 1746, 1804, 2165
SchI	GAGTC	4 cut(s)	392, 436, 2567, 2987
ScrFI	CCNGG	4 cut(s)	740, 1328, 1452, 2570
SduI	GDGCHC	3 cut(s)	577, 846, 1760
SfaNI	GCATC	7 cut(s)	1063, 1270, 1555, 1903, 2189, 2914, 2926
SfcI	CTRYAG	2 cut(s)	1297, 1612
SfuI	TTCGAA	1 cut(s)	290
SinI	GGWCC	1 cut(s)	1804
SmiMI	CAYNNNNRTG	7 cut(s)	546, 1463, 1778, 2318, 2609, 2759, 2765
SmlI	CTYRAG	2 cut(s)	410, 854
SmoI	CTYRAG	2 cut(s)	410, 854
SnaBI	TACGTA	1 cut(s)	648
SphI	GCATGC	1 cut(s)	2323
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	7 cut(s)	680, 803, 835, 1076, 1181, 2108, 2439
SspMI	CTAG	6 cut(s)	120, 131, 255, 2555, 2589, 2813
SstI	GAGCTC	2 cut(s)	577, 846
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	4 cut(s)	738, 1326, 1450, 2568
StyI	CCWWGG	1 cut(s)	1897
TaaI	ACNGT	8 cut(s)	451, 763, 1529, 1976, 2189, 2475, 2486, 2512
TaiI	ACGT	4 cut(s)	650, 2175, 2434, 3004
TaqI	TCGA	5 cut(s)	290, 365, 498, 846, 2646
TatI	WGTACW	2 cut(s)	827, 2304
TauI	GCSGC	1 cut(s)	1079
TscAI	CASTG	6 cut(s)	14, 287, 934, 2028, 2491, 2515
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	4 cut(s)	1283, 1553, 2425, 2726
Tsp45I	GTSAC	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	2889
TspRI	CASTG	6 cut(s)	14, 287, 934, 2028, 2491, 2515
VneI	GTGCAC	1 cut(s)	1756
VpaK11BI	GGWCC	1 cut(s)	1804
VspI	ATTAAT	2 cut(s)	1434, 1473
XagI	CCTNNNNNAGG	1 cut(s)	129
XapI	RAATTY	2 cut(s)	2248, 2859
XbaI	TCTAGA	1 cut(s)	2588
XceI	RCATGY	1 cut(s)	2323
XmnI	GAANNNNTTC	1 cut(s)	2756
XspI	CTAG	6 cut(s)	120, 131, 255, 2555, 2589, 2813
Zsp2I	ATGCAT	3 cut(s)	1570, 2634, 2989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.